Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045800 | OGI:01121710 | 5/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:43314793-43317080 | ||||||||
| Gene Symbol | GNS4, OsPR2, PR2, Gns4, OsGns4, OsGLN2, - | ||||||||||
| DNA seq | attagggaaaaaaacattttcttcactttactcatggcataatacactattaattctggaatttgagaatcgcaggcacaccatacgtgctgcacactttattactgattgattatttctactgctctgcttgaagctagcttatttttagtttacagttaattttaaggatgcatacgagcaagagctttcagtagctgctatgtcgatccgatgcagcatctgacttagaaccggatgggatacacgggcgacttgttagggtagaagagcccaaagtttctctcggtgggatccccgttcttctggttctcattgaacatggcgaatatgtacgcctccagtgcccccggcctcttgggcgtgccacgcccgacatggtcgatcagcccctggttgtacgccctcgcattgtccacgctcgccccgaaccctcccgccgacggccacccgctctccgacaccaccaccctcacgttcccggcgccggccttctccagcgcggcgtacacggcgtccatcatggcgtcgaacaggttggtgtaggtgagcccgttgtttgggtccctcaccgtggtgcccggccggaacgtggcgtagttgaggctgatgtcgcgcgggttccccctgtaggcgaagtacgggtacacgttggcgagcagcggcgcgccggtggtcgccaggtagcgcgcgatgtccttcatgtaggcgtccctgaagacgccggcggagggtgggtaggagttggagatgacgtcgaacttcaccgcggtggacgccttgatggcgccgaggcccgacgaggccagggcggagttgacgttgcggatggccgggaggatgctactcgtggcgccgccttccacctcgttgccgacggcgatgtacttgatgttgacggccgggtagtagggcctgacgttgtcgcggacccacgcggccgcgttggaggagctggcggcgaggttggacaactggtcgccgacgtcgaggatgagggcgatgccggagttgcgcagggcgttgagcgcctccttgtcggggtagtagatgcgcatgccgttgatgcccttggacttgtacagctgcaccacctcgctccgcgacgggaggttgttgccgagaacgccatagcacacgccgatggattgcacagctgcatatgcacgacaggataatggacaccgacagcataaagttaggttttccaataaaccatagcagagtacacaatgaacgtgcaccttcgaattatcagagcatgcctagttgaatttcaagtgaaactttgtttgcccaaaaagaattaacccaaagctatagtgtctatctggtccggacattttatttagtttcatctatctatttatctatcttccatatatctatctatatattatctattatattatctagaccagacatgatctattatatatatattgtatagtaacataatgataacttgaaacgaagtcaccatattcgctatgtatacctatacattatcatattaataaaataataagatctaagctaattacatcatctaggaccaaattaacggtgtagattaatactccttccgtttcaaaatgtttgacaccgttgactttttagtacgtgtttgaccatttgtcttattcaaaaaatttaagtaattatttattcttttcatatcatttgattcattgttaaataaactttcatatacacatataattttacatatttcacaattttttttgaataagacgaacggtcaaacatgtactAaaaagtcaacggtgtcaaacattttgaaacggagggagtatatagcaatatttgtatacaaagtactattgcaattgtaatgtattgtgtagaaaatattgcatatatggaaataggaactaagagttctatatcaaattcaattcaactgacccgtgtaaaattacgtggggaaattccatagttatgaaaagacaacaagatgcatatagataaaatgtggtttattctataaagaacattgtggtgctcttcagaattttgttcccctcaaatctctgactagccactaaacacttacagtacgtgctcagggcattgcaagcaaaacagagaattgccatttgctagaaacatagagagaatctgatcagtacttgttggagcagaagcaaatgctccaatgatcagagcaattgtaagcatagaagcaactccctgtctcctggccattgttgtcccagctagctactcccaactgctgctcctgaacctgaatgttatgcatgcta
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| CDS seq | atggccaggagacagggagttgcttctatgcttacaattgctctgatcattggagcatttgcttctgctccaacaactgtgcaatccatcggcgtgtgctatggcgttctcggcaacaacctcccgtcgcggagcgaggtggtgcagctgtacaagtccaagggcatcaacggcatgcgcatctactaccccgacaaggaggcgctcaacgccctgcgcaactccggcatcgccctcatcctcgacgtcggcgaccagttgtccaacctcgccgccagctcctccaacgcggccgcgtgggtccgcgacaacgtcaggccctactacccggccgtcaacatcaagtacatcgccgtcggcaacgaggtggaaggcggcgccacgagtagcatcctcccggccatccgcaacgtcaactccgccctggcctcgtcgggcctcggcgccatcaaggcgtccaccgcggtgaagttcgacgtcatctccaactcctacccaccctccgccggcgtcttcagggacgcctacatgaaggacatcgcgcgctacctggcgaccaccggcgcgccgctgctcgccaacgtgtacccgtacttcgcctacagggggaacccgcgcgacatcagcctcaactacgccacgttccggccgggcaccacggtgagggacccaaacaacgggctcacctacaccaacctgttcgacgccatgatggacgccgtgtacgccgcgctggagaaggccggcgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcgggagggttcggggcgagcgtggacaatgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggccgggggcactggaggcgtacatattcgccatgttcaatgagaaccagaagaacggggatcccaccgagagaaactttgggctcttctaccctaacaagtcgcccgtgtatcccatccggttctaa
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| Protein seq | MARRQGVASMLTIALIIGAFASAPTTVQSIGVCYGVLGNNLPSRSEVVQLYKSKGINGMRIYYPDKEALNALRNSGIALILDVGDQLSNLAASSSNAAAWVRDNVRPYYPAVNIKYIAVGNEVEGGATSSILPAIRNVNSALASSGLGAIKASTAVKFDVISNSYPPSAGVFRDAYMKDIARYLATTGAPLLANVYPYFAYRGNPRDISLNYATFRPGTTVRDPNNGLTYTNLFDAMMDAVYAALEKAGAGNVRVVVSESGWPSAGGFGASVDNARAYNQGLIDHVGRGTPKRPGALEAYIFAMFNENQKNGDPTERNFGLFYPNKSPVYPIRF |
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| Function | Glucan endo-1,3-beta-glucosidase GII [UniProtKB/Swiss-Prot:P15737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045800 | OsLima_01g0045800.01 | Chr01 | 43314793 | 43317080 | - | NAM | ||
| CDS seq | atggccaggagacagggagttgcttctatgcttacaattgctctgatcattggagcatttgcttctgctccaacaactgtgcaatccatcggcgtgtgctatggcgttctcggcaacaacctcccgtcgcggagcgaggtggtgcagctgtacaagtccaagggcatcaacggcatgcgcatctactaccccgacaaggaggcgctcaacgccctgcgcaactccggcatcgccctcatcctcgacgtcggcgaccagttgtccaacctcgccgccagctcctccaacgcggccgcgtgggtccgcgacaacgtcaggccctactacccggccgtcaacatcaagtacatcgccgtcggcaacgaggtggaaggcggcgccacgagtagcatcctcccggccatccgcaacgtcaactccgccctggcctcgtcgggcctcggcgccatcaaggcgtccaccgcggtgaagttcgacgtcatctccaactcctacccaccctccgccggcgtcttcagggacgcctacatgaaggacatcgcgcgctacctggcgaccaccggcgcgccgctgctcgccaacgtgtacccgtacttcgcctacagggggaacccgcgcgacatcagcctcaactacgccacgttccggccgggcaccacggtgagggacccaaacaacgggctcacctacaccaacctgttcgacgccatgatggacgccgtgtacgccgcgctggagaaggccggcgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcgggagggttcggggcgagcgtggacaatgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggccgggggcactggaggcgtacatattcgccatgttcaatgagaaccagaagaacggggatcccaccgagagaaactttgggctcttctaccctaacaagtcgcccgtgtatcccatccggttctaa
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| Protein seq | MARRQGVASMLTIALIIGAFASAPTTVQSIGVCYGVLGNNLPSRSEVVQLYKSKGINGMRIYYPDKEALNALRNSGIALILDVGDQLSNLAASSSNAAAWVRDNVRPYYPAVNIKYIAVGNEVEGGATSSILPAIRNVNSALASSGLGAIKASTAVKFDVISNSYPPSAGVFRDAYMKDIARYLATTGAPLLANVYPYFAYRGNPRDISLNYATFRPGTTVRDPNNGLTYTNLFDAMMDAVYAALEKAGAGNVRVVVSESGWPSAGGFGASVDNARAYNQGLIDHVGRGTPKRPGALEAYIFAMFNENQKNGDPTERNFGLFYPNKSPVYPIRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0944700 | RBH | 2.257814 | 1.746875 | 80.847977 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71670 | RBH | 1.458941 | 1.122661 | 19.886187 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0944700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046920 | SBH | 0.0 | 3.636589 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046320 | RBH | 0.376287 | 0.0 | 24.487690 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046740 | RBH | 0.978651 | 0.0 | 63.830250 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045710 | SBH | 2.586416 | 0.0 | 32.912643 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681200 | SBH | 3.643111 | 1.8056825 | 0.6814965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045250 | RBH | 0.0 | 0.0 | 8.709590 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0683500 | SBH | 7.4921425 | 0.025908 | 0.002766 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045950 | SBH | 0.0 | 0.375513 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045640 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045980 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045970 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045710 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046000 | SBH | 0.0 | 0.0 | 12.126670 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045950 | SBH | 0.0 | 3.656847 | 0.0 |
