Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045340 | OGI:01121160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:42896249-42896542 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagctgagcagcatccagctcatccagcacgtcctcaacatcatagattcataggcaacggacttgagtttggtgagccaccgcctctctgctgctccacctgttcctccttggcgcgccttatcgtcggcatcttgcatcacagcctccagatctctcatcttctccttcatgtcatccacgtcgtctttgaagctccagagcagagttgcctcctccactgcgaggtcgccgagcttgctgatgacccgattcaccacggacctcgcaataatctctcctactccgctcat |
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| CDS seq | atgagcggagtaggagagattattgcgaggtccgtggtgaatcgggtcatcagcaagctcggcgacctcgcagtggaggaggcaactctgctctggagcttcaaagacgacgtggatgacatgaaggagaagatgagagatctggaggctgtgatgcaagatgccgacgataaggcgcgccaaggaggaacaggtggagcagcagagaggcggtggctcaccaaactcaagtccgttgcctatgaatctatgatgttgaggacgtgctggatgagctggatgctgctcagctaa |
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| Protein seq | MSGVGEIIARSVVNRVISKLGDLAVEEATLLWSFKDDVDDMKEKMRDLEAVMQDADDKARQGGTGGAAERRWLTKLKSVAYESMMLRTCWMSWMLLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045340 | OsLima_01g0045340.01 | Chr01 | 42896249 | 42896542 | - | NAM | ||
| CDS seq | atgagcggagtaggagagattattgcgaggtccgtggtgaatcgggtcatcagcaagctcggcgacctcgcagtggaggaggcaactctgctctggagcttcaaagacgacgtggatgacatgaaggagaagatgagagatctggaggctgtgatgcaagatgccgacgataaggcgcgccaaggaggaacaggtggagcagcagagaggcggtggctcaccaaactcaagtccgttgcctatgaatctatgatgttgaggacgtgctggatgagctggatgctgctcagctaa
More
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| Protein seq | MSGVGEIIARSVVNRVISKLGDLAVEEATLLWSFKDDVDDMKEKMRDLEAVMQDADDKARQGGTGGAAERRWLTKLKSVAYESMMLRTCWMSWMLLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.730795 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0937400 | SBH | 1.284278 | 0.937975 | 3.034086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71114 | SBH | 0.314931 | 0.199530 | 0.895986 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0937300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046360 | RBH | 0.228650 | 8.552243 | 5.854773 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045870 | RBH | 0.204936 | 10.299050 | 4.416955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046260 | SBH | 1.107277 | 12.062038 | 12.954419 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045800 | SBH | 0.177871 | 0.279217 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045370 | SBH | 3.504380 | 25.119926 | 12.713538 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677500 | SBH | 1.1574795 | 22.944889 | 1.908075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044910 | SBH | 0.162485 | 0.579616 | 1.814602 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679400 | SBH | 1.3340915 | 12.6515895 | 3.644632 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045330 | RBH | 0.297823 | 0.109571 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045290 | SBH | 0.391748 | 23.571180 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045620 | SBH | 4.426317 | 44.989075 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045620 | SBH | 0.559402 | 2.152736 | 1.622641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045350 | SBH | 0.243149 | 9.651262 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045700 | SBH | 0.240738 | 6.384727 | 4.464960 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045420 | SBH | 0.436752 | 3.576477 | 2.484021 |
