Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g71114 | OGI:01121160 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:41159307-41163822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGGAAATCCTTGCACATGTACCATAAAACTTTCAAGAGTTCGAGGAGGTAATAGGTTCTCAAGCACCTCTTCATCCTTGTCCACATTTCTCGTGCCACCAAGTCCCCATGACAAAGTTAGTTCCCGAAGGTCAGTCATATCACGCAACTTAGCTTCCCTTGCATTGTCCAGCCGCTCAACATTTTCAAGATGTTGAATTCCCAGTGCACGACAACTTAGTTTCCCAAGCTCCACTATACTGCAACACTCTCCATTTTCTATCTCATGTACATCATGTTCTTCACGGCCAGGTAAATTTAGACACTCTTTAATGGACCAAGCCTTATCAAGCACACCTTTTGTTCCTGAAATAACATCAAGCAGCGTGAGGCTAGCCATGTCGCTGATACTATCTGGCATGTCTCGCAGACTATAACAACAAGTAAGGTTCAAGACTTGAAGTTGAAGGTCACCAAACAAAGACGGAAGATGTTCAATCCTTATACAATATGACAAATTGAGATGCTTCAACTTAAATATGTTGCATAATGATTGGGGTAATGACTGTAGCTTAGAACAGCTTGTGAGGTTCAAAAACTGGAGCTCAGAAAGGTCCCCGAAGCATTCAGGGAGTTGTTTGAGGCCATGGCAGTCTGAAAGATTGAGGTCTTTCAAATGTTTAAGTTGGCAGAAGGATTCTGGTAACACTGGAATCTTGTAGCAATCAGACAGGTCCAAAACCTCTAGTCTATAAAGAATCCCAAAATCTTCTGGTAGGTTTTCTAGCTCATGGCAATCTGAAAGGATTAGATGCTCAAGAGACTCAAGGTTAAAATTGCCTGGTAGTTTGGTTAGCTTTGAACAACTTGTCAAGTTTACAAATGAGAGCTTAGAAAGGCTGCCAAATTCATCAGGGAGATTTTGAAGAGCACAACAACCTGACATGTCTAGTTGTTCTAAGCATTTAAGGTTGTGGATTGATTCAGGCAATTCTTCAAGTTTAGTACACCCAGATAGGCTGAGGAGAGAAAGTTTGAGAAGGTTTCCAAATGATGTCGGAAGTTTACTGAGGTCACTATTCCCTGATAAGTCTAGATAACAAAGCTTGTGTAGGTTACCAATATTAGCAGGCAAGGTTTCAAGAGAGCAATTGGATAGAATTAGAGTTTGCATATTCTGAAACATATGCAAATATTTAGGAAGTGCTGCAATTGGCAAGCCTGAGACATCAAGATAAGCTAGCAGCATCAGTTGACGAATGGAGGATGGCAACGCCATACTAACAGGGATAGATTGCCCTTCAGACGAACATCCGCTCAGGTCCAAGATCCGTATATACTTTGACCCAGAGAATGCCTTTCGGGGAAGTTGCGATCCAATGCACTCCCTAAAATGAATGGTTCTAACCTTGCTTGGTAGATCTTTGAAAAACTTGGGTTGCTTCTGGTAGTTGACCAACTGTGCATGTCGGCAATAACGCTTATTATTAGCTTTGCTCCATGTATTTGGCATGGTAGCGTCCATGACAAGGAATTCATCAGGAGCAATTATTGTTGCGAGATCATGCACTAAATCATGCATGGTGAGCTTGCGTGGAGCTTTGGTGTGCATTGGACTAACCTGCAGGGAAAGCTACTATCAAAATTTAAAACGGTGCTGCAAAATACAATGTAAATAGTGTTTTGCCATGTACAAGCTGCTTAAGTTGTTTTTTCCCTTTTTCATTGCCTACTACCAAAACTGAACTACAACATTATGTACCTTTTCTAACCTTCTTAATTAAATCAGCAGATGCCACATTTCCTTTCAAAAATAAATTGTAAATCCCACAAAATTAGTAGGTATAATTAATTTCAGCAGCAGTGATTAATCTATATATCTTATAAAGTCGATCTCAACTAATTGTTGTGTATTGCTAATTCTCTCTTCCCCCAGAACCACACCATCTTAATTATTTCTAGGCTACATATGGTTGATCGAAGGTGTAGGTTAGATGCAGCCTTATCTTTAATGAAGTCACACTGTTTAAATTATTTCTAGAATTAGTAAGTTGTTTTAAGGTATAAATTGTATAAAGCCATGAACCCAAGCATTTAGATGGTTGATCTAATTGTAGGTTTGAATGCCCTAAACTACGGAACTGCTTATTTTTACCCTCAACTTTGAATACTAGACAAATAATGAAAAACCAGACAGAGTGGCAAAAAAACACACACCACAAAAAGTAGCAGAAACAAAATGCGCAAAAGGAATAATTAAAAAAACAATGTTGCACTTATTTTGATGAGATGAACAGATATTTCGTCTATATAATGAAATATATCTTTTGTAGTGTAAATCTACAAAAACAATGGACTACCCTAAACTAAATAAGGTGTGTAACCTATCAAACTGAAGCATTGTATTGAATATATCATTTTAAACGTATTAAATTTAAAAATAAGTATTTAATTTGGAACTGAAAATGCAGATGTTGAAACATTAACTTGTGGGTTTTAAATTAAAAGCTACAAGAAAAGAAAGATTATTGGACTGGATTAGGATACTCTAGCATAAATTATTTATGTTACTTATTAAGGTTAATACTCTAGAGGAAGCATATGTATAAATTTATCTTACTAGCAAAGCATATCCTAGTGAGCATATGATGCATCAATATCCAGACATGAACCGTAGAAAGGTGTTCTATGATACTTACCATGGAAGACTTGGAAATCTGAAGAAAGGACATCCGCAAAAGATAGTTGACACACCTTTGACCATTATCTCGTGCTTCAATGTATCCAAGGGCTATCCATTGCTGGATCAAGCGATCAGTGTCCATGACGAAACCCTTCGAAAAGGCTGCCAAATATGTAAAGCACATTTTGAATTCTCGCTTCATATAGTAATAGCTCAACATTAGGCGCTCTATAGTGTCTTGCTGATGATCTGCTTTGAAATCCAAAACAATCTTTCTATCCCTTATATCTGTCCATGCCTCAACCGTCCTATGTTCAGACATTACTTGCCCGAGAGCATTTGCCACCAGTGGTAGTCCTCCACACTTCTCGGCAATTTGCCTTCCAATTTCCTCTAAGCCATTTTGGCCATCATCAGGCCCAAATACTCTCCGCTTCATGACGCTCCAGCAGTCGTAAGGTGATAAAACACCCAAATTGATATGATCAGGCTCAGGCACCGGACATACTTTCCGTTCATTTGCAAGATAACCAGTGTATAGTACTTGCACTACGCTTCCACTACGTGTAGTTGCTATAATCTTGCTACCCTTTCCGCCATGTTGTAACATCTGCTTCAACTTTTCCAAATTTTCTCCATATTCTTCCCAGAGATCATCTAGAACAATCAAGTATCTTCTGTTGGCAAGTTCTTTTTTCAGATTATTGTTTACAAACTGCAAGTTGCAGTTGTCCAGGTTGATACTTCTGTTTGCTCCTCTGATGATAGCCTTCCCAATTTTGAGCAGGTCAAACTCCTTGGAAACATAGACCCAGATTCGCAAATCAAAGACATTGACCCTTTTGTCTGCAAAAACTGCTTGGGCTAAGGTAGTCTTCCCTAGTCCACCAAGCCCAACAATTGGGATGATTGAGATATCCTCCTTAGCTTCAGTGTTCAACAGAAGGTTGATTATTTTTTTTGTTTCGGCATCCCTCCCTAGCATTCCAATGTCCACGTCACCATCATCTGCAAAAGTTTCATTGTCTCTACTCCCTTCTGCCACTAGTTCACGATGCACATGATGAAGCTTAATGCTATCCTTTTTTATTGAGACTATTTTCTCCCTCGAGTTCTTCATGTTGCGGGCTATGGTCATCTTCCGGAGAAGCGGATTGTTCCGGGAAAGGAATAACTTGAGCTGAAAAATAAAAATGAAGTCAATATCATCCGCTATGTTAATTTTCTTTTGTATACCCACGATAGTATCTGATAGTCTGGTATGGAACGGGAATTGACAGTCTAATAGCAAACTTCTAGAGAAGTGTTTATAGTGGAAAAGACAACTTTGCTTTTTAATTTTAGAAATTAATTGGTTTGGCACAATGCTAAAATATTCCACAATGAAAGTCAGGCATGTACAGCAAGTAAATTGATCCATAAAGATGAATCATAGAACTTTTATTCAAAACACCAATATGTGGAAGTGGAAGTGAGTACCTTGGGTTGATGGTTCTTGATGAGCTGAGCAGCATCGAGCTCATCCAGCACGTCCTCAACGTCGTAGGCGACGGACTTGAGTTTGTTGAGCCACCGCCGTTCCGCCTCTCCATCTTTTCCTCCCTGGCGTGCTTTGCCATCAACATCTTGTATCACAGCCTCCAGATCTCTCATCTTCTCCTCCATGTCGTCCACGTCGTCCTTGAATCTCCACAGCAGAGTGGCCTCCTCCACCACAAGCTCGCTGAGCCTGCTGGCGACCCGATTCGCCACGGAACTCGCAATCATCCCTCCAATCCCGCTCATGGATGGTATGGCAGATTCACAGTGAACTCTATCAACAGGAATATGGCTTTGTGAAATAGAAGCAAGATG
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| CDS seq | ATGAGCGGGATTGGAGGGATGATTGCGAGTTCCGTGGCGAATCGGGTCGCCAGCAGGCTCAGCGAGCTTGTGGTGGAGGAGGCCACTCTGCTGTGGAGATTCAAGGACGACGTGGACGACATGGAGGAGAAGATGAGAGATCTGGAGGCTGTGATACAAGATGTTGATGGCAAAGCACGCCAGGGAGGAAAAGATGGAGAGGCGGAACGGCGGTGGCTCAACAAACTCAAGTCCGTCGCCTACGACGTTGAGGACGTGCTGGATGAGCTCGATGCTGCTCAGCTCATCAAGAACCATCAACCCAAGCTCAAGTTATTCCTTTCCCGGAACAATCCGCTTCTCCGGAAGATGACCATAGCCCGCAACATGAAGAACTCGAGGGAGAAAATAGTCTCAATAAAAAAGGATAGCATTAAGCTTCATCATGTGCATCGTGAACTAGTGGCAGAAGGGAGTAGAGACAATGAAACTTTTGCAGATGATGGTGACGTGGACATTGGAATGCTAGGGAGGGATGCCGAAACAAAAAAAATAATCAACCTTCTGTTGAACACTGAAGCTAAGGAGGATATCTCAATCATCCCAATTGTTGGGCTTGGTGGACTAGGGAAGACTACCTTAGCCCAAGCAGTTTTTGCAGACAAAAGGGTCAATGTCTTTGATTTGCGAATCTGGGTCTATGTTTCCAAGGAGTTTGACCTGCTCAAAATTGGGAAGGCTATCATCAGAGGAGCAAACAGAAGTATCAACCTGGACAACTGCAACTTGCAGTTTGTAAACAATAATCTGAAAAAAGAACTTGCCAACAGAAGATACTTGATTGTTCTAGATGATCTCTGGGAAGAATATGGAGAAAATTTGGAAAAGTTGAAGCAGATGTTACAACATGGCGGAAAGGGTAGCAAGATTATAGCAACTACACGTAGTGGAAGCGTAGTGCAAGTACTATACACTGGTTATCTTGCAAATGAACGGAAAGTATGTCCGGTGCCTGAGCCTGATCATATCAATTTGGGTGTTTTATCACCTTACGACTGCTGGAGCGTCATGAAGCGGAGAGTATTTGGGCCTGATGATGGCCAAAATGGCTTAGAGGAAATTGGAAGGCAAATTGCCGAGAAGTGTGGAGGACTACCACTGGTGGCAAATGCTCTCGGGCAAGTAATGTCTGAACATAGGACGGTTGAGGCATGGACAGATATAAGGGATAGAAAGATTGTTTTGGATTTCAAAGCAGATCATCAGCAAGACACTATAGAGCGCCTAATGTTGAGCTATTACTATATGAAGCGAGAATTCAAAATGTGCTTTACATATTTGGCAGCCTTTTCGAAGGGTTTCGTCATGGACACTGATCGCTTGATCCAGCAATGGATAGCCCTTGGATACATTGAAGCACGAGATAATGGTCAAAGGTGTGTCAACTATCTTTTGCGGATGTCCTTTCTTCAGATTTCCAAGTCTTCCATGGTTAGTCCAATGCACACCAAAGCTCCACGCAAGCTCACCATGCATGATTTAGTGCATGATCTCGCAACAATAATTGCTCCTGATGAATTCCTTGTCATGGACGCTACCATGCCAAATACATGGAGCAAAGCTAATAATAAGCGTTATTGCCGACATGCACAGTTGGTCAACTACCAGAAGCAACCCAAGTTTTTCAAAGATCTACCAAGCAAGGAACAAAAGGTGTGCTTGATAAGGCTTGGTCCATTAAAGAGTGTCTAA
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| Protein seq | MSGIGGMIASSVANRVASRLSELVVEEATLLWRFKDDVDDMEEKMRDLEAVIQDVDGKARQGGKDGEAERRWLNKLKSVAYDVEDVLDELDAAQLIKNHQPKLKLFLSRNNPLLRKMTIARNMKNSREKIVSIKKDSIKLHHVHRELVAEGSRDNETFADDGDVDIGMLGRDAETKKIINLLLNTEAKEDISIIPIVGLGGLGKTTLAQAVFADKRVNVFDLRIWVYVSKEFDLLKIGKAIIRGANRSINLDNCNLQFVNNNLKKELANRRYLIVLDDLWEEYGENLEKLKQMLQHGGKGSKIIATTRSGSVVQVLYTGYLANERKVCPVPEPDHINLGVLSPYDCWSVMKRRVFGPDDGQNGLEEIGRQIAEKCGGLPLVANALGQVMSEHRTVEAWTDIRDRKIVLDFKADHQQDTIERLMLSYYYMKREFKMCFTYLAAFSKGFVMDTDRLIQQWIALGYIEARDNGQRCVNYLLRMSFLQISKSSMVSPMHTKAPRKLTMHDLVHDLATIIAPDEFLVMDATMPNTWSKANNKRYCRHAQLVNYQKQPKFFKDLPSKEQKVCLIRLGPLKSV |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g71114 | LOC_Os01g71114.1 | Chr01 | 41159307 | 41163822 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGCGGGATTGGAGGGATGATTGCGAGTTCCGTGGCGAATCGGGTCGCCAGCAGGCTCAGCGAGCTTGTGGTGGAGGAGGCCACTCTGCTGTGGAGATTCAAGGACGACGTGGACGACATGGAGGAGAAGATGAGAGATCTGGAGGCTGTGATACAAGATGTTGATGGCAAAGCACGCCAGGGAGGAAAAGATGGAGAGGCGGAACGGCGGTGGCTCAACAAACTCAAGTCCGTCGCCTACGACGTTGAGGACGTGCTGGATGAGCTCGATGCTGCTCAGCTCATCAAGAACCATCAACCCAAGCTCAAGTTATTCCTTTCCCGGAACAATCCGCTTCTCCGGAAGATGACCATAGCCCGCAACATGAAGAACTCGAGGGAGAAAATAGTCTCAATAAAAAAGGATAGCATTAAGCTTCATCATGTGCATCGTGAACTAGTGGCAGAAGGGAGTAGAGACAATGAAACTTTTGCAGATGATGGTGACGTGGACATTGGAATGCTAGGGAGGGATGCCGAAACAAAAAAAATAATCAACCTTCTGTTGAACACTGAAGCTAAGGAGGATATCTCAATCATCCCAATTGTTGGGCTTGGTGGACTAGGGAAGACTACCTTAGCCCAAGCAGTTTTTGCAGACAAAAGGGTCAATGTCTTTGATTTGCGAATCTGGGTCTATGTTTCCAAGGAGTTTGACCTGCTCAAAATTGGGAAGGCTATCATCAGAGGAGCAAACAGAAGTATCAACCTGGACAACTGCAACTTGCAGTTTGTAAACAATAATCTGAAAAAAGAACTTGCCAACAGAAGATACTTGATTGTTCTAGATGATCTCTGGGAAGAATATGGAGAAAATTTGGAAAAGTTGAAGCAGATGTTACAACATGGCGGAAAGGGTAGCAAGATTATAGCAACTACACGTAGTGGAAGCGTAGTGCAAGTACTATACACTGGTTATCTTGCAAATGAACGGAAAGTATGTCCGGTGCCTGAGCCTGATCATATCAATTTGGGTGTTTTATCACCTTACGACTGCTGGAGCGTCATGAAGCGGAGAGTATTTGGGCCTGATGATGGCCAAAATGGCTTAGAGGAAATTGGAAGGCAAATTGCCGAGAAGTGTGGAGGACTACCACTGGTGGCAAATGCTCTCGGGCAAGTAATGTCTGAACATAGGACGGTTGAGGCATGGACAGATATAAGGGATAGAAAGATTGTTTTGGATTTCAAAGCAGATCATCAGCAAGACACTATAGAGCGCCTAATGTTGAGCTATTACTATATGAAGCGAGAATTCAAAATGTGCTTTACATATTTGGCAGCCTTTTCGAAGGGTTTCGTCATGGACACTGATCGCTTGATCCAGCAATGGATAGCCCTTGGATACATTGAAGCACGAGATAATGGTCAAAGGTGTGTCAACTATCTTTTGCGGATGTCCTTTCTTCAGATTTCCAAGTCTTCCATGGTTAGTCCAATGCACACCAAAGCTCCACGCAAGCTCACCATGCATGATTTAGTGCATGATCTCGCAACAATAATTGCTCCTGATGAATTCCTTGTCATGGACGCTACCATGCCAAATACATGGAGCAAAGCTAATAATAAGCGTTATTGCCGACATGCACAGTTGGTCAACTACCAGAAGCAACCCAAGTTTTTCAAAGATCTACCAAGCAAGGAACAAAAGGTGTGCTTGATAAGGCTTGGTCCATTAAAGAGTGTCTAA
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| Protein seq | MSGIGGMIASSVANRVASRLSELVVEEATLLWRFKDDVDDMEEKMRDLEAVIQDVDGKARQGGKDGEAERRWLNKLKSVAYDVEDVLDELDAAQLIKNHQPKLKLFLSRNNPLLRKMTIARNMKNSREKIVSIKKDSIKLHHVHRELVAEGSRDNETFADDGDVDIGMLGRDAETKKIINLLLNTEAKEDISIIPIVGLGGLGKTTLAQAVFADKRVNVFDLRIWVYVSKEFDLLKIGKAIIRGANRSINLDNCNLQFVNNNLKKELANRRYLIVLDDLWEEYGENLEKLKQMLQHGGKGSKIIATTRSGSVVQVLYTGYLANERKVCPVPEPDHINLGVLSPYDCWSVMKRRVFGPDDGQNGLEEIGRQIAEKCGGLPLVANALGQVMSEHRTVEAWTDIRDRKIVLDFKADHQQDTIERLMLSYYYMKREFKMCFTYLAAFSKGFVMDTDRLIQQWIALGYIEARDNGQRCVNYLLRMSFLQISKSSMVSPMHTKAPRKLTMHDLVHDLATIIAPDEFLVMDATMPNTWSKANNKRYCRHAQLVNYQKQPKFFKDLPSKEQKVCLIRLGPLKSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.314931 | 0.199530 | 0.895986 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0937400 | RBH | 1.284278 | 0.937975 | 3.034086 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0937300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046380 | RBH | 0.132912 | 6.317603 | 5.871472 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045890 | RBH | 0.266118 | 6.178813 | 3.314190 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046260 | RBH | 1.107277 | 12.062038 | 12.954419 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045800 | RBH | 0.177871 | 0.279217 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045370 | RBH | 3.504380 | 25.119926 | 12.713538 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677700 | SBH | 3.8162655 | 10.810249 | 5.856437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044910 | RBH | 0.162485 | 0.579616 | 1.814602 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0679600 | SBH | 4.4601645 | 10.7955275 | 6.9736705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045370 | SBH | 0.141169 | 0.403357 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045290 | RBH | 0.391748 | 23.571180 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045620 | RBH | 4.426317 | 44.989075 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045620 | SBH | 0.559402 | 2.152736 | 1.622641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045350 | SBH | 0.243149 | 9.651262 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045700 | RBH | 0.240738 | 6.384727 | 4.464960 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045420 | RBH | 0.436752 | 3.576477 | 2.484021 |
