Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0039490 | OGI:01109160 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:38267166-38270371 | ||||||||
| Gene Symbol | RLCK48, OsRLCK48 | ||||||||||
| DNA seq | tctttacaaagtacaacgcgcgcattctgaacttctgatgacatatgatcccattccccacttccctcgtagacaagcattcccaattccccatcgggcaacggctccggtgcggcggtgcccaacccgtactactccttcaggctcgtgatcgacggcccgtacgtggagccgtcgtgccgcttccctctggcgcctgcggcggcggcggcggtggcgcgctgctgctcgtgctggaagtcgcgccggatggaccagaggacctcggcgcaacgccgcatggcagggcgcgccgcgcggtccggcgcggtgcactcggccgccagcgccatcactttctccatggccgccaccaccgcgctggtcctccgcatccgggcgtccatcgccaccaccgcatcgccgtcccggcacttccgcagcgcctgcgTCcacacggtaatttcgtcgaacatctttcgtgcaacaacttgggaaacgttaaacgtggcagttaggatgtggtttttacccattgcgtggtgaggcgttggtggcGgccgcggccgcgctcgatggggcgtcggccggtgaggagctccacgaggaggacgccgaaggagtagacgtcgctgcggtcggtgagttggttcgtccgcatgtactctgggtctacgtatcctgcagtgCccttcaccattgttgagacgtgcgttgcttcagtgttgtcaggcgctagccgtgcgaagccgaaatcggccacctttgctctaagttgatcagttaggagaatgttggatgacttgatgtcacggtggatgattggatggtctgcatgcccaattgcacattgttgtgaaatgccatcagaaattagaacgctagcaatttggtatcattttaggtaccgatagtagataaattctgtgggttctaattttaatgtgtacaacttctcaaaaaaaattctcaccttgaatgtgtgcttatgtaattaaatatggcgatgacatgatttataggtgttcagggctttaactatgcaacgcttttgagctcagaaaggtgtcaaacatgaatgccaacatattcatgctatacgcatagtgctactgtaggtttattcaggacaattgcagatttcctctagggaagtcagcttctcaaaaaaaaagaagacgtgcttgttgataagagagagctatgcctatgctaattgcaatagagacttgtttcagttatatcatgtaaaaattgtgtggtctaccttactcctgggggaaaaaaatgaaattaaacatggtacctgtatatccatgtaagtacgagacagcatgaactatgtcaatagcgatgttgagacgctgcgaaaattccaatggttctcctcgcaatcctgaacagtggaaaaggttgtgtttctaaatgattttcaaaggagtttctgaaaagaaaaaataacattgcatcctacgacataatttgtgtccccaaatgttgaataatagattgaatatcaacaatattattaagttctttaactatcaaTtcttttataaaacaagggcatgagctctgcctcatttcactaatagaataaagcacttgcactaaaaacacttacttatctgttacttctagaacttactctgacttgtactaaaaacacttgcatatgtacatcatgcttaggggatcaacataggaagatgtcagtgcattttggattgcaatatattaTtttggtgcttaatgccattcaattctagtgacttctatcttttgacctattttagcaatattattatgaatttaagcatgtgtattgctcttgtttgacataccatccaagtgttcacgaagtgatccattgttgacatactcaaccagaattaggcgttcatcctcatgttctaggtacccaagaaacttcaccaagtttaaatgctcaacctttgacaatgtctgtatttcacttctgaactcttcagataggtgcctgtcatacatAttctgcgagttccaggttttacatgaaaaatgttcatccatttagttgctataagtaatctgctagtaaatattttgctcttgtatttgaggaattcaactacaaaccttagttgctctctttacagctatgatggatccatccctgagcttccccttatatacagtgccaaaatttcctagcccaattctgttttgttcactgaagtttgaagtagccatacaaatttcctgaaatgagcattgttcttgccatgacttcttttgactgtcatcgcctctctgtctggatgtattagtgcttgtgctacttgctgacgagattcttgagactactgaaaaccactggaaactttcaacatcttatttgcaataaattactctcaacctttttgcttgaacaattgaacagttgattgttAaatacagaacaattgataattgagtagtaatatatgcttgttggtttttgaaagacatttgtcttcaataaaagaaccatacatggacaaggtacttagctgaattatatctatattcaagatcaatgagaaacaggagagtaggtgcttctctaaattcctggtgcgagtacctacaagctcatgttggtctcgttaaagagaaactatcatgccatattgcttttataactcaaattacaattttgatccagattgattcagttctgatattatgctgcaattctgcagtattgcacttttcatgtacggcaaatcctaaaaatccaaccacatctaacttggaaatatagatatatcttatgttgtttgtatgcaaagatcataatatgattaatgatttcgtaactgcagaaatagatgtttgattgataaatcaagaaaggaaggtgagcttacttgaactaatagaaatatcatggccatcgtttgaggccttgacatgtctttccttgattttggattgacgaggagcaaaacagcttgtgcatccccctgtaattgtgtcaactacctcccagaatgatcttgagcttttgccattcttgctaaccttaGggggggaacgagctgcataggtggatgtccaggagaacccaggatctgactgaaactcatggttgaaactagtagactctctcccttggctggtgcttgatgccccgcggcgtcctgcttgcataatcgatgggatttagagatactgctcccgagtaatcaggtaacatgtttctt
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| CDS seq | atgcaagcaggacgccgcggggcatcaagcaccagccaagggagagagtctactagtttcaaccatgagtttcagtcagatcctgggttctcctggacatccacctatgcagctcgttccccccCtaaggttagcaagaatggcaaaagctcaagatcattctgggaggtagttgacacaattacagggggatgcacaagctgttttgctcctcgtcaatccaaaatcaaggaaagacatgtcaaggcctcaaacgatggccatgatatttctattagttcaatagtctcaagaatctcgtcagcaagtagcacaagcactaatacatccagacagagaggcgatgacagtcaaaagaagtcatggcaagaacaatgctcatttcaggaaatttgtatggctacttcaaacttcagtgaacaaaacagaattgggctaggaaattttggcactgtatataaggggaagctcagggatggatccatcatagctgtaaagagagcaactaagaaTatgtatgacaggcacctatctgaagagttcagaagtgaaatacagacattgtcaaaggttgagcatttaaacttggtgaagtttcttgggtacctagaacatgaggatgaacgcctaattctggttgagtatgtcaacaatggatcacttcgtgaacacttggatggattgcgaggagaaccattggaattttcgcagcgtctcaacatcgctattgacatagttcatgctgtctcgtacttacatggatatacagaccatccaatcatccaccgtgacatcaagtcatccaacattctcctaactgatcaacttagagcaaaggtggccgatttcggcttcgcacggctagcgcctgacaacactgaagcaacgcacgtctcaacaatggtgaaggGcactgcaggatacgtagacccagagtacatgcggacgaaccaactcaccgaccgcagcgacgtctactccttcggcgtcctcctcgtggagctcctcaccggccgacgccccatcgagcgcggccgcggcCgccaccaacgcctcaccacgcaatgggcgctgcggaagtgccgggacggcgatgcggtggtggcgatggacgcccggatgcggaggaccagcgcggtggtggcggccatggagaaagtgatggcgctggcggccgagtgcaccgcgccggaccgcgcggcgcgccctgccatgcggcgttgcgccgaggtcctctggtccatccggcgcgacttccagcacgagcagcagcgcgccaccgccgccgccgccgcaggcgccagagggaagcggcacgacggctccacgtacgggccgtcgatcacgagcctgaaggagtag
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| Protein seq | MQAGRRGASSTSQGRESTSFNHEFQSDPGFSWTSTYAARSPPKVSKNGKSSRSFWEVVDTITGGCTSCFAPRQSKIKERHVKASNDGHDISISSIVSRISSASSTSTNTSRQRGDDSQKKSWQEQCSFQEICMATSNFSEQNRIGLGNFGTVYKGKLRDGSIIAVKRATKNMYDRHLSEEFRSEIQTLSKVEHLNLVKFLGYLEHEDERLILVEYVNNGSLREHLDGLRGEPLEFSQRLNIAIDIVHAVSYLHGYTDHPIIHRDIKSSNILLTDQLRAKVADFGFARLAPDNTEATHVSTMVKGTAGYVDPEYMRTNQLTDRSDVYSFGVLLVELLTGRRPIERGRGRHQRLTTQWALRKCRDGDAVVAMDARMRRTSAVVAAMEKVMALAAECTAPDRAARPAMRRCAEVLWSIRRDFQHEQQRATAAAAAGARGKRHDGSTYGPSITSLKE |
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| Function | Calmodulin-binding receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q9FIL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039490 | OsLima_01g0039490.02 | Chr01 | 38267166 | 38270371 | - | NAM | ||
| CDS seq | atgcaagcaggacgccgcggggcatcaagcaccagccaagggagagagtctactagtttcaaccatgagtttcagtcagatcctgggttctcctggacatccacctatgcagctcgttccccccCtaaggttagcaagaatggcaaaagctcaagatcattctgggaggtagttgacacaattacagggggatgcacaagctgttttgctcctcgtcaatccaaaatcaaggaaagacatgtcaaggcctcaaacgatggccatgatatttctattagttcaatagtctcaagaatctcgtcagcaagtagcacaagcactaatacatccagacagagaggcgatgacagtcaaaagaagtcatggcaagaacaatgctcatttcaggaaatttgtatggctacttcaaacttcagtgaacaaaacagaattgggctaggaaattttggcactgtatataaggggaagctcagggatggatccatcatagctgtaaagagagcaactaagaaTatgtatgacaggcacctatctgaagagttcagaagtgaaatacagacattgtcaaaggttgagcatttaaacttggtgaagtttcttgggtacctagaacatgaggatgaacgcctaattctggttgagtatgtcaacaatggatcacttcgtgaacacttggatggattgcgaggagaaccattggaattttcgcagcgtctcaacatcgctattgacatagttcatgctgtctcgtacttacatggatatacagaccatccaatcatccaccgtgacatcaagtcatccaacattctcctaactgatcaacttagagcaaaggtggccgatttcggcttcgcacggctagcgcctgacaacactgaagcaacgcacgtctcaacaatggtgaaggGcactgcaggatacgtagacccagagtacatgcggacgaaccaactcaccgaccgcagcgacgtctactccttcggcgtcctcctcgtggagctcctcaccggccgacgccccatcgagcgcggccgcggcCgccaccaacgcctcaccacgcaatgggcgctgcggaagtgccgggacggcgatgcggtggtggcgatggacgcccggatgcggaggaccagcgcggtggtggcggccatggagaaagtgatggcgctggcggccgagtgcaccgcgccggaccgcgcggcgcgccctgccatgcggcgttgcgccgaggtcctctggtccatccggcgcgacttccagcacgagcagcagcgcgccaccgccgccgccgccgcaggcgccagagggaagcggcacgacggctccacgtacgggccgtcgatcacgagcctgaaggagtag
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| Protein seq | MQAGRRGASSTSQGRESTSFNHEFQSDPGFSWTSTYAARSPPKVSKNGKSSRSFWEVVDTITGGCTSCFAPRQSKIKERHVKASNDGHDISISSIVSRISSASSTSTNTSRQRGDDSQKKSWQEQCSFQEICMATSNFSEQNRIGLGNFGTVYKGKLRDGSIIAVKRATKNMYDRHLSEEFRSEIQTLSKVEHLNLVKFLGYLEHEDERLILVEYVNNGSLREHLDGLRGEPLEFSQRLNIAIDIVHAVSYLHGYTDHPIIHRDIKSSNILLTDQLRAKVADFGFARLAPDNTEATHVSTMVKGTAGYVDPEYMRTNQLTDRSDVYSFGVLLVELLTGRRPIERGRGRHQRLTTQWALRKCRDGDAVVAMDARMRRTSAVVAAMEKVMALAAECTAPDRAARPAMRRCAEVLWSIRRDFQHEQQRATAAAAAGARGKRHDGSTYGPSITSLKE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0039490 | OsLima_01g0039490.01 | Chr01 | 38267166 | 38270371 | - | NAM | ||
| CDS seq | atggctacttcaaacttcagtgaacaaaacagaattgggctaggaaattttggcactgtatataaggggaagctcagggatggatccatcatagctgtaaagagagcaactaagaaTatgtatgacaggcacctatctgaagagttcagaagtgaaatacagacattgtcaaaggttgagcatttaaacttggtgaagtttcttgggtacctagaacatgaggatgaacgcctaattctggttgagtatgtcaacaatggatcacttcgtgaacacttggatggattgcgaggagaaccattggaattttcgcagcgtctcaacatcgctattgacatagttcatgctgtctcgtacttacatggatatacagaccatccaatcatccaccgtgacatcaagtcatccaacattctcctaactgatcaacttagagcaaaggtggccgatttcggcttcgcacggctagcgcctgacaacactgaagcaacgcacgtctcaacaatggtgaaggGcactgcaggatacgtagacccagagtacatgcggacgaaccaactcaccgaccgcagcgacgtctactccttcggcgtcctcctcgtggagctcctcaccggccgacgccccatcgagcgcggccgcggcCgccaccaacgcctcaccacgcaatgggcgctgcggaagtgccgggacggcgatgcggtggtggcgatggacgcccggatgcggaggaccagcgcggtggtggcggccatggagaaagtgatggcgctggcggccgagtgcaccgcgccggaccgcgcggcgcgccctgccatgcggcgttgcgccgaggtcctctggtccatccggcgcgacttccagcacgagcagcagcgcgccaccgccgccgccgccgcaggcgccagagggaagcggcacgacggctccacgtacgggccgtcgatcacgagcctgaaggagtag
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| Protein seq | MATSNFSEQNRIGLGNFGTVYKGKLRDGSIIAVKRATKNMYDRHLSEEFRSEIQTLSKVEHLNLVKFLGYLEHEDERLILVEYVNNGSLREHLDGLRGEPLEFSQRLNIAIDIVHAVSYLHGYTDHPIIHRDIKSSNILLTDQLRAKVADFGFARLAPDNTEATHVSTMVKGTAGYVDPEYMRTNQLTDRSDVYSFGVLLVELLTGRRPIERGRGRHQRLTTQWALRKCRDGDAVVAMDARMRRTSAVVAAMEKVMALAAECTAPDRAARPAMRRCAEVLWSIRRDFQHEQQRATAAAAAGARGKRHDGSTYGPSITSLKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 38269489 | 38270036 | - | OsLima_01g0039490.01 | OsLima_01g0039490.01,OsLima_01g0039490.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.068808 | 0.067281 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0960400 | SBH | 3.927451 | 3.956542 | 5.098091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63280 | RBH | 0.299036 | 0.072212 | 0.120409 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040510 | RBH | 0.541828 | 3.318347 | 4.725391 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039990 | SBH | 0.234859 | 2.073362 | 2.699215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040390 | SBH | 0.341252 | 1.949657 | 4.874898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039860 | RBH | 0.156727 | 0.375234 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039450 | RBH | 3.117598 | 3.604689 | 1.674824 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0576700 | SBH | 20.3235165 | 60.5722005 | 6.044853 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039130 | RBH | 0.114410 | 0.309417 | 0.211309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0603600 | RBH | 2.666235 | 5.8645835 | 3.209127 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020890 | SBH | 3.005132 | 0.186760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039430 | RBH | 0.367438 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039670 | RBH | 1.304388 | 2.717552 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039640 | RBH | 0.246730 | 0.604027 | 0.378596 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039530 | RBH | 0.000000 | 0.767810 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039980 | RBH | 0.000000 | 0.0 | 0.399819 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039660 | RBH | 0.339977 | 1.940621 | 0.371306 |
