Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0852100 | OGI:01109160 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:36683837-36687072 | ||||||||
| Gene Symbol | RLCK48, OsRLCK48 | ||||||||||
| DNA seq | TTTAAATTTTTTTGGAACATTAATACAAATTTTGACGTAAGCTTGCCCAAAGTTTCTTTACAAAGTACAACGCGCGCATTCTGAACTTCTGATGACATATGATCCCATTTCCCACTTCCCTCGTAGACAAGCATTCCCAATTCCCCATCGGGCAACGGCTCCGGTGCGGCGGTGCCCAACCCGTACTACTCCTTCAGGCTCGTGATCGACGGCCCGTACGTGGAGCCGTCGTGCCGCTTCCCTCTGGCGCCTGCGGCGGCGGCGGCGGTGGCGCGCTGCTGCTCGTGCTGGAAGTCGCGCCGGATGGACCAGAGGACCTCGGCGCAACGCCGCATGGCAGGGCGCGCCGCGCGGTCCGGCGCGGTGCACTCGGCCGCCAGCGCCATCACTTTCTCCATGGCCGCCACCACCGCGCTGGTCCTCCGCATCCGGGCGTCCATCGCCACCACCGCGTCGCCGTCCCGGCACTTCCGCAGCGCCTGCGTCCACACGGTAATTTCGTCGAACATCTTTCGTGCAACAACTTGGGAAACGTTAAACGTGGCAGTTAGGATGTGGTTTTTACCCATTGCGTGGTGAGGCGTTGGTGGCGGCCGCGGCCGCGCTCGATGGGGCGTCGGCCGGTGAGGAGCTCCACGAGGAGGACGCCGAAGGAGTAGACGTCGCTGCGGTCGGTGAGTTGGTTCGTCCGCATGTACTCTGGGTCTACGTATCCTGCAGTGCCCTTCACCATTGTTGAGACGTGCGTTGCTTCAGTGTTGTCAGGCGCTAGCCGTGCGAAGCCGAAATCGGCCACCTTTGCTCTAAGTTGATCAGTTAGGAGAATGTTGGATGACTTGATGTCACGGTGGATGATTGGATGGTCTGCATGCCCAATTGCACATTGTTGTGAAATGCCATCAGAAATTAGAACGCTAGCAATTTGGTATCATTTTAGGTACCGATAGTAGATAAATTCTGTGGGTTCTAATTTTAATGTGTACAACTTCTCAAAAAAAATTCTCACCTTGAATGTGTGCTTATGTAATTAAATATGGCGATGACATGATTTATAGGTGTTCAGGGCTTTAACTATGCAACGCTTTTGAGCTCACAAAGGTGTCAAACATGAATGCCAACATATTCATGCTATACGCATAGTGCTACTGTTGGTTTATTCAGGACAATTGCAGATTTCCTCTAGGGAAGTCAGCTTCTCAAAAAAAAAGAAGACGTGCTTGTTGATAAGAGAGAGCTATGCCTATGCTAATTGCAATAGAGACTTGTTTCAGTTATATCATGTAAAAATTGTGTGGTCTACCTTACTCCTGGGGGAAAAAAATGAAATTAAACATGGTACCTGTATATCCATGTAAGTACGAGACAGCATGAACTATGTCAATAGCGATGTTGAGACGCTGCGAAAATTCCAATGGTTCTCCTCGCAATCCTGAACAGTGGAAAAGGTTGTGTTTCTAAATGATTTTCAAAGGAGTTTCTGAAAAGAAAAAATAACATTGCATCCTACGACATAATTTGTGTCCCCAAATGTTGAATAATAGATTGAATATCAACAATATTATTAAGTTCTTTAACTATCAATTCTTTTATAAAACAAGGGCATGAGCTCTGCCTCATTTCACTAATAGAATAAAGCACTTGCACTAAAAACACTTACTTATCTGTTACTTCTAGAACTTACTCTGACTTGTACTAAAAACACTTGCATATGTACATCATGCTTAGGGGTTCAACATAGGAAGATGTCAGTGCATTTTGGATTGCAATATATTATTTTGGTGCTTAATGCCATTCAATTCTAGTGACTTCTATCTTTTGACCTATTTTAGCAATATTATTATGAATTTAAGCATGTGTATTGCTCTTGTTTGACATACCATCCAAGTGTTCACGAAGTGATCCATTGTTGACATACTCAACCAGAATTAGGCGTTCATCCTCATGTTCTAGGTACCCAAGAAACTTCACCAAGTTTAAATGCTCAACCTTTGACAATGTCTGTATTTCACTTCTGAACTCTTCAGATAGGTGCCTGTCATACATATTCTGCGAGTTCCAGGTTTTACATGAAAAATGTTCATCCATTTAGTTGCTATAAGTAATCTGCTAGTAAATATTTTGCTCTTGTATTTGAGGAATTCAACTACAAACCTTAGTTGCTCTCTTTACAGCTATGATGGATCCATCCCTGAGCTTCCCCTTATATACAGTGCCAAAATTTCCTAGCCCAATTCTGTTTTGTTCACTGAAGTTTGAAGTAGCCATACAAATTTCCTGAAATGAGCATTGTTCTTGCCATGACTTCTTTTGACTGTCATCGCCTCTCTGTCTGGATGTATTAGTGCTTGTGCTACTTGCTGACGAGATTCTTGAGACTACTGAAAACCACTGGAAACTTTCAACATCTTATTTGCAATAAATTACTCTCAACCTTTTTGCTTGAACAATTGAACAGTTGATTGTTAAATACAGAACAATTGATAATTGAGTAGTAATATATGCTTGTTGGTTTTTGAAAGACATTTGTCTTCAATAAAAGAACCATACATGGACAAGGTACTTAGCTGAATTATATCTATATTCAAGATCAATGAGAAACAGGAGAGTAGGTGCTTCTCTAAATTCCTGGTGCGAGTACCTACAAGCTCATGTTGGTCTCGTTAAAGAGAAACTATCATGCCATATTGCTTTTATAACTCAAATTACAATTTTGATCCAGATTGATTCAGTTCTGATATTATGCTGCAATTCTGCAGTATTGCACTTTTCATGTACGGCAAATCCTAAAAATCCAACCACATCTAACTTGGAAATATAGATATATCTTATGTTGTTTGTATGCAAAGATCATAATATGATTAATGATTTCGTAACTGCAGAAATAGATGTTTGATTGATAAATCAAGAAAGGAAGGTGAGCTTACTTGAACTAATAGAAATATCATGGCCATCGTTTGAGGGCTTGACATGTCCTTCCTTGATTTTGGATTGACGAGGAGCAAAACAGCTTGTGCATCCCCCTGTAATTGTGTCAACTACCTCCCAGAATGATCTTGAGCTTTTGCCATTCTTGCTAACCTTAGGGGGGGAACGAGCTGCATAGGTGGATGTCCAGGAGAACCCAGGATCTGACTGAAACTCATGGTTGAAACTAGTAGACTCTCTCCCTTGGCTGGTGCTTGATGCCCCGCGGCGTCCTGCTTGCATAATCGATGGGATTTAGAGATACTGCTCCC
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| CDS seq | ATGCAAGCAGGACGCCGCGGGGCATCAAGCACCAGCCAAGGGAGAGAGTCTACTAGTTTCAACCATGAGTTTCAGTCAGATCCTGGGTTCTCCTGGACATCCACCTATGCAGCTCGTTCCCCCCCTAAGGTTAGCAAGAATGGCAAAAGCTCAAGATCATTCTGGGAGGTAGTTGACACAATTACAGGGGGATGCACAAGCTGTTTTGCTCCTCGTCAATCCAAAATCAAGGAAGGACATGTCAAGCCCTCAAACGATGGCCATGATATTTCTATTAGTTCAAGTAAGCTCACCTTCCTTTCTTGA |
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| Protein seq | MQAGRRGASSTSQGRESTSFNHEFQSDPGFSWTSTYAARSPPKVSKNGKSSRSFWEVVDTITGGCTSCFAPRQSKIKEGHVKPSNDGHDISISSSKLTFLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0852100 | Os01t0852100-01 | Chr01 | 36683837 | 36687072 | - | irgsp1_rep | ||
| CDS seq | ATGCAAGCAGGACGCCGCGGGGCATCAAGCACCAGCCAAGGGAGAGAGTCTACTAGTTTCAACCATGAGTTTCAGTCAGATCCTGGGTTCTCCTGGACATCCACCTATGCAGCTCGTTCCCCCCCTAAGGTTAGCAAGAATGGCAAAAGCTCAAGATCATTCTGGGAGGTAGTTGACACAATTACAGGGGGATGCACAAGCTGTTTTGCTCCTCGTCAATCCAAAATCAAGGAAGGACATGTCAAGCCCTCAAACGATGGCCATGATATTTCTATTAGTTCAAGTAAGCTCACCTTCCTTTCTTGA
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| Protein seq | MQAGRRGASSTSQGRESTSFNHEFQSDPGFSWTSTYAARSPPKVSKNGKSSRSFWEVVDTITGGCTSCFAPRQSKIKEGHVKPSNDGHDISISSSKLTFLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63280 | RBH | 0.299036 | 0.072212 | 0.120409 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040510 | SBH | 0.541828 | 3.318347 | 4.725391 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039990 | SBH | 0.234859 | 2.073362 | 2.699215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040390 | SBH | 0.341252 | 1.949657 | 4.874898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039860 | SBH | 0.156727 | 0.375234 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039450 | RBH | 3.117598 | 3.604689 | 1.674824 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039130 | RBH | 0.114410 | 0.309417 | 0.211309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0603600 | RBH | 2.666235 | 5.8645835 | 3.209127 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039490 | RBH | 0.068808 | 0.067281 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039430 | RBH | 0.367438 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039670 | RBH | 1.304388 | 2.717552 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039660 | RBH | 0.339977 | 1.940621 | 0.371306 |
