Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0030550 | OGI:01090370 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:31396384-31401200 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaagacaaagcagcactgcaggggcatccatactaccggtgacgaatatcggcatggccgcctccagaagcgagcttctccggccggcattcggcgagccctctccttcgctaggaccattcgtcgttaaccctcacacctgcagctacaggtgatcgaacaacctgcatccattatacatcgatcacgaactgaactcttgtacatcgatcggtctggtttgagtggtccactccaggtggtggcagaagttcctgatcgtgctggtgctgtacacggcgtgggcgtcgccgttcgagctggccatggagaagtcggcctcggccgcgctcgccgtcacggagctggtggtcgacgccttcttcgccgtcgacattgccgtctccttcttcgtggcgtaccgcgacgcctccaccggcctcctcgtaaccgaccgcaagaagatcgccaccaggtatacgtgatgctgatccgtcactgcatgtccattttttttttctttttgctgctctctctgtttcaggttgtaagacgtttttactttaatcaaagttaaactgctttaagttgattaaatttgtaggaaaaagtaggaatatttttaacccaagacaaatttattataaaaatatattcaattattaatttgatgaaactaatttagtattatatatattactatatttgtctataaacttagttaaacttaaaataatttaattttgactaaagttaaaacattttataacctgaaaacctgaaatggagggagtatctccgtcagagagttcaatatttatcgatggacttgcatttttaggcacctggcacgaccatgcttggcgctggatgtcgcctcaacgattcctttacagatgatctaccggatagtgagcggcaaaagacaagcattgtatgggttcctcaatcttctccggctctggcgactacggcgcgtcagcaagctctttgcaaggtaaatactccacatccaatggacgatctcggtcaaatagattgtgtgtgagttcataacttcatatacgcacgaatgattagtacgtgagtgtgcagtactttgtgtgagtgtgtattgcagacttgtagagttgtgatcaagtacgtatggctttttgtacgcagcatgatttaattagctcctttgaaatataggattctcaaaacataggaataggaaaaaatataagatttgaatatcatgctcttgtaaaacctataggatttcaaaacacaggaataccagaactagtgccttcgaataattcacatgaaataaaatataggaattctagaggaaatttatttgggtgagagagagagagagagtagagagagaaaggaagagagtgcttattttcctttgaaatgaggcataggaaattaaatctataggattttcaaagttgtagtattctttcaattgaaaggacgctataggaatagaatcctaaggatttggatcctttgcaaatccaaaaagaaaccctccaaatccaaaggaggccttagcactactggcctgacttataaggtaatttattatcatagtactcccaccattttcaaatataaacatttcttggatttaaattttgtacataatatatgcatttataagcatttgtatatactaactaaaggttgtgttcgccaattcgagttgagaactcttccaccattggacacaaaacgaaacgacggtttagtgcgtgattaattaagtatgagcaaaaaacttgaaaatgaattaatatgattttttaaaacaatttttctatagaaTttttttttaaaaaaatacagcgtttaacattttgggaagcgtacgcgtgaaaaacaaggaagatgaagttgggaaaatagattaaagaatatagcctaattgtgccatcgttcacgtcattcaaattcctttctattttaataccccctcccactctcgcactcctatcaatctctcatctaatgacgagcaatatatattttcttaatcttaatatctgctaaataacctagaaattcttatatgtctttggaagaacggagagtaccttctttcatgatatcaaccttgtaagtgagtggaccaagagacttttctttctttgtctttatcttcagtgcgagtgtgggggaaaagagctcgtttaagtggcttggtttataattgctgctagctccgagcctccgattgatcagtttttttaagctaaaattattcaaaaatttgtcagttccctagctcttaacaaaaaattgtcttaaataattcagaaaaatacaataaataaatttctagaaagcttggccgcctcaatttccatccctgtagtacagtagtagtgcagatacactacgtgactttgagttggtagcatgattcaccaatgggtggcatgtaatgctatatgaataactacagtgtgcatatgtgatcatcattcatcaatgaccgatatgaaattctgaatcttgcaggttggagaaggacattagattcagttacttgtggaccaggcttatcaagctcctctacgtaaggccacgccgttccacccggagtactatatttcggcagagttcatacaaataacttgctacgaaatcttgtgtgctcatgattgcaatgcaggtgacgctgttcgcagtgcacttcgcctcgtgcatctacctgtggatggcgttccaccacaaggcgaaggagctgacgtggatcggcagccagttccacggcttcgaggaccgcagcgtgtggttctgctacacctgcgccgtgtactggtccatcaccacgctcgccaccgtcggctacggcgacctgcacgccgccaacacgggcgagatgctgttcagcatcgccttcatgctcttcaacatgggcctcacctcctacatcatcggcaacatcaccaacctcgtcgtccacgaaaccaccaacaccttcaagatggtaaatattggcaaaacctgatcatggttttcttttcttttgacacggattggtgatcatggcattgtgtgcagagggacatggtgcagaggacgtcggtgttcgggagaacgaaccggctgccggtggcgatgagggagcagatgatggaaagcctgcagctcaggttcagggcggaggagcagctgcagcaggagatgctgtccgagctgcccaaggccgtgcggtcaggcatcgcgcagcacatgttcaggggggcggtccagagctgctacctgttccagggcgtctccgacaagctcgtcctgccgctggtaattgaacacgcagtagcaaacgccttggtcggaatagctctgcgtttaccggttgggtgactgactaaataacgtggtaaattcaggtcgcggagatgaaggcagagtcatttCcccccaaggcggatatcatcctggagaacgaggcttcgacggactgctacatcatcgtgtctggtgaagtggtaagaacatgcctcgtgtgacgtttgttctcttcgctgttcatgctctgacaacctgcatttctcttaatcttttattttgtatcaggaggtattgacaacccttgaggatggtacagagaaggtaaagcacacgagaacccagttgacgcacttagtatatcagttataccatttcaagcttagggtgtgtttagattctaaaaatttttggtaaaaaaagtcacatcaaatatttggacacatgcatggagcattaaatgtggacaaaaaaaaccaattgcacagtttgcatgtaaattgcgagacgaatcttttgagtctaattgcgccatgatttgacaatgtgatgctacagtaaacatttgctaataacagattaattagacttaataaattcatcttgcagtttacaggcggaatctgtaatttattttattattagtctacgtttaatacttcaagtgtatccgtatatttaaaaaaaattggccaaagaaaaaaattggccaaagaacaaaacacggccttactcttctcagtatactgaactttttccggcatttgcatactgacctgaaaaggttctgatcaaaattgtgacatttcagcaagtgatgagaatagggccacggggaatggcaggggaaattggggtgatgttcaacatcccacagccgttcaccatccggagcagaaagctcacgcagctcgtccgtataagccacagccatatggtctcgaccatccggcctaacactgcagatggggtcgttgtattctccaattttgttctggtatttgattttatttaagaatgcaatatagatatttttttctcagttcacaatttctcacaacttttttcagtaccttgaatctctgaaggtgaaggcaaaggaaacagcctttgttagggatcatcttcgcaatggctactccacggtattaggaagtgcaaccatgtttgatgtagatgaatccaaagagtcagctcacaaaatgttgccatgcaaagaacccaaacgggtatctattcatgaacacctcttaaatgggactggcacagcactgaacggctcatctgggaagctcgtcatactgccagattctatgcaagatctgatgaaactttcaggtatgtaaattgtgctctgcataaagattaacatcgtcagatgttcagatcaagcaacagatttatcatcgttgtgaatggatacccctttgcagaaaagaagtttgggaaggcagcgagagggattctcaccgtgggaggtgccgaggtagaggacattgaagtgataagagatggcgatcacctgttctttagttggtag
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| CDS seq | atggcaagacaaagcagcactgcaggggcatccatactaccggtgacgaatatcggcatggccgcctccagaagcgagcttctccggccggcattcggcgagccctctccttcgctaggaccattcgtcgttaaccctcacacctgcagctacaggtggtggcagaagttcctgatcgtgctggtgctgtacacggcgtgggcgtcgccgttcgagctggccatggagaagtcggcctcggccgcgctcgccgtcacggagctggtggtcgacgccttcttcgccgtcgacattgccgtctccttcttcgtggcgtaccgcgacgcctccaccggcctcctcgtaaccgaccgcaagaagatcgccaccagacaagcattgtatgggttcctcaatcttctccggctctggcgactacggcgcgtcagcaagctctttgcaaggttggagaaggacattagattcagttacttgtggaccaggcttatcaagctcctctacgtgacgctgttcgcagtgcacttcgcctcgtgcatctacctgtggatggcgttccaccacaaggcgaaggagctgacgtggatcggcagccagttccacggcttcgaggaccgcagcgtgtggttctgctacacctgcgccgtgtactggtccatcaccacgctcgccaccgtcggctacggcgacctgcacgccgccaacacgggcgagatgctgttcagcatcgccttcatgctcttcaacatgggcctcacctcctacatcatcggcaacatcaccaacctcgtcgtccacgaaaccaccaacaccttcaagatgagggacatggtgcagaggacgtcggtgttcgggagaacgaaccggctgccggtggcgatgagggagcagatgatggaaagcctgcagctcaggttcagggcggaggagcagctgcagcaggagatgctgtccgagctgcccaaggccgtgcggtcaggcatcgcgcagcacatgttcaggggggcggtccagagctgctacctgttccagggcgtctccgacaagctcgtcctgccgctggtcgcggagatgaaggcagagtcatttCcccccaaggcggatatcatcctggagaacgaggcttcgacggactgctacatcatcgtgtctggtgaagtggaggtattgacaacccttgaggatggggaaattggggtgatgttcaacatcccacagccgttcaccatccggagcagaaagctcacgcagctcgtccgtataagccacagccatatggtctcgaccatccggcctaacactgcagatggggtcgttgtattctccaattttgttctgtaccttgaatctctgaaggtgaaggcaaaggaaacagcctttgttagggatcatcttcgcaatggctactccacggtattaggaagtgcaaccatgtttgatgtagatgaatccaaagagtcagctcacaaaatgttgccatgcaaagaacccaaacgggtatctattcatgaacacctcttaaatgggactggcacagcactgaacggctcatctgggaagctcgtcatactgccagattctatgcaagatctgatgaaactttcagaaaagaagtttgggaaggcagcgagagggattctcaccgtgggaggtgccgaggtagaggacattgaagtgataagagatggcgatcacctgttctttagttggtag
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| Protein seq | MARQSSTAGASILPVTNIGMAASRSELLRPAFGEPSPSLGPFVVNPHTCSYRWWQKFLIVLVLYTAWASPFELAMEKSASAALAVTELVVDAFFAVDIAVSFFVAYRDASTGLLVTDRKKIATRQALYGFLNLLRLWRLRRVSKLFARLEKDIRFSYLWTRLIKLLYVTLFAVHFASCIYLWMAFHHKAKELTWIGSQFHGFEDRSVWFCYTCAVYWSITTLATVGYGDLHAANTGEMLFSIAFMLFNMGLTSYIIGNITNLVVHETTNTFKMRDMVQRTSVFGRTNRLPVAMREQMMESLQLRFRAEEQLQQEMLSELPKAVRSGIAQHMFRGAVQSCYLFQGVSDKLVLPLVAEMKAESFPPKADIILENEASTDCYIIVSGEVEVLTTLEDGEIGVMFNIPQPFTIRSRKLTQLVRISHSHMVSTIRPNTADGVVVFSNFVLYLESLKVKAKETAFVRDHLRNGYSTVLGSATMFDVDESKESAHKMLPCKEPKRVSIHEHLLNGTGTALNGSSGKLVILPDSMQDLMKLSEKKFGKAARGILTVGGAEVEDIEVIRDGDHLFFSW |
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| Function | Potassium channel KAT6 [UniProtKB/Swiss-Prot:A2ZX97] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0030550 | OsLima_01g0030550.01 | Chr01 | 31396384 | 31401200 | + | NAM | ||
| CDS seq | atggcaagacaaagcagcactgcaggggcatccatactaccggtgacgaatatcggcatggccgcctccagaagcgagcttctccggccggcattcggcgagccctctccttcgctaggaccattcgtcgttaaccctcacacctgcagctacaggtggtggcagaagttcctgatcgtgctggtgctgtacacggcgtgggcgtcgccgttcgagctggccatggagaagtcggcctcggccgcgctcgccgtcacggagctggtggtcgacgccttcttcgccgtcgacattgccgtctccttcttcgtggcgtaccgcgacgcctccaccggcctcctcgtaaccgaccgcaagaagatcgccaccagacaagcattgtatgggttcctcaatcttctccggctctggcgactacggcgcgtcagcaagctctttgcaaggttggagaaggacattagattcagttacttgtggaccaggcttatcaagctcctctacgtgacgctgttcgcagtgcacttcgcctcgtgcatctacctgtggatggcgttccaccacaaggcgaaggagctgacgtggatcggcagccagttccacggcttcgaggaccgcagcgtgtggttctgctacacctgcgccgtgtactggtccatcaccacgctcgccaccgtcggctacggcgacctgcacgccgccaacacgggcgagatgctgttcagcatcgccttcatgctcttcaacatgggcctcacctcctacatcatcggcaacatcaccaacctcgtcgtccacgaaaccaccaacaccttcaagatgagggacatggtgcagaggacgtcggtgttcgggagaacgaaccggctgccggtggcgatgagggagcagatgatggaaagcctgcagctcaggttcagggcggaggagcagctgcagcaggagatgctgtccgagctgcccaaggccgtgcggtcaggcatcgcgcagcacatgttcaggggggcggtccagagctgctacctgttccagggcgtctccgacaagctcgtcctgccgctggtcgcggagatgaaggcagagtcatttCcccccaaggcggatatcatcctggagaacgaggcttcgacggactgctacatcatcgtgtctggtgaagtggaggtattgacaacccttgaggatggggaaattggggtgatgttcaacatcccacagccgttcaccatccggagcagaaagctcacgcagctcgtccgtataagccacagccatatggtctcgaccatccggcctaacactgcagatggggtcgttgtattctccaattttgttctgtaccttgaatctctgaaggtgaaggcaaaggaaacagcctttgttagggatcatcttcgcaatggctactccacggtattaggaagtgcaaccatgtttgatgtagatgaatccaaagagtcagctcacaaaatgttgccatgcaaagaacccaaacgggtatctattcatgaacacctcttaaatgggactggcacagcactgaacggctcatctgggaagctcgtcatactgccagattctatgcaagatctgatgaaactttcagaaaagaagtttgggaaggcagcgagagggattctcaccgtgggaggtgccgaggtagaggacattgaagtgataagagatggcgatcacctgttctttagttggtag
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| Protein seq | MARQSSTAGASILPVTNIGMAASRSELLRPAFGEPSPSLGPFVVNPHTCSYRWWQKFLIVLVLYTAWASPFELAMEKSASAALAVTELVVDAFFAVDIAVSFFVAYRDASTGLLVTDRKKIATRQALYGFLNLLRLWRLRRVSKLFARLEKDIRFSYLWTRLIKLLYVTLFAVHFASCIYLWMAFHHKAKELTWIGSQFHGFEDRSVWFCYTCAVYWSITTLATVGYGDLHAANTGEMLFSIAFMLFNMGLTSYIIGNITNLVVHETTNTFKMRDMVQRTSVFGRTNRLPVAMREQMMESLQLRFRAEEQLQQEMLSELPKAVRSGIAQHMFRGAVQSCYLFQGVSDKLVLPLVAEMKAESFPPKADIILENEASTDCYIIVSGEVEVLTTLEDGEIGVMFNIPQPFTIRSRKLTQLVRISHSHMVSTIRPNTADGVVVFSNFVLYLESLKVKAKETAFVRDHLRNGYSTVLGSATMFDVDESKESAHKMLPCKEPKRVSIHEHLLNGTGTALNGSSGKLVILPDSMQDLMKLSEKKFGKAARGILTVGGAEVEDIEVIRDGDHLFFSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0718700 | RBH | 0.061189 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g52070 | RBH | 0.030442 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0718700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031670 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031240 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031690 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030900 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0496800 | RBH | 0.0232745 | 0.0167005 | 0.0446325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0489700 | RBH | 0.210983 | 0.0095515 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030960 | SBH | 0.0 | 0.0 | 0.174725 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031180 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030840 | SBH | 0.0 | 0.0 | 0.000000 |
