Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0025010 | OGI:01013090 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:26589960-26594056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaggcagagtagcagacaaccggtcgtgagcataccaccgatcaattccccccttctctttctgctgcgcactgctgcactccttgttatagctgttgcgggaagtaagctgctctgcgagcgagggtagctgctgcgataagctagcgagtgggacgatcgatggggatggtcgtcttcgccgcaggtgacgagcggccgctgatgcttgtgtgggcggcggtcgcgggcgcagtgctcgcgtggtgcgccgtgcgggcgatggagtgggcgtggtggaggccgcggcgcctggagcgggcgctccgtgcccagggcctccgcggcacgccgtaccgctccccggcgggcgacgcgccgctcaacgtgcagctcagcgccgaggcgagggcgcggaccatgccgctcggctgccacgacgtcgtgccgcgcgcgatgccgctgttccaccaggccatgaaggagcacggtacgacatgttctactctcctctctctctctctctcgtttgatcatagccataaatttttgagattttaatcagggcgagacatggccgaacacctgatctctgtaactgtaaatggcttgacctttctactttcctactatcaatgatctgttagtgctcttgctttcgtttttaaaaaaagaaaaaggcgtgcctcactggcaaatagtttcaggctccacctgtttaagctataaaatttgaagcactgttgagataattaatcattgttttcatacagtacaacagatctggaacaaatgaatgtccagaagctaactattggatcttttttggcgctccaagtttttatggactaatctagcttttagaccttgatccattggttatataacctattaaccttgttagagggaagacctcataataaggaaggaaatggtttttttaatataccattagaattaacactgttaataaggtgagtggagtacgtaattagtaaaatgatgccacatatattgctctatacaaatttaaaatacaatatgccaattatatttcataccttgaatgtaaaatctcaaacaacatttgaatctgattgataacactaaaatatgtagacgctaaacgccgcaattgaaataaaagcaacagtggaaatcttgttatgctctggattatatttgagtgtggtttcacatattacatatttggaaattaaagtggcttgcatgcatgtctccataagaatcagcttaggctgccaaatctatcatatttttaatttttagtggcaaaatacatgaatataggatttattgtagcctcttacttcactagattctgtagaagggctcctgtcttaaagagatgaaCTtgtgtatacaatatatatatatatatatatatgcactccctccgtccctaatatataagtgattttgaacggacgtgacactttttagtccaacaaatctttttctgtttagatttgttgtagtagtaaatcatatccacctaaaatcccttatattttaaggcaggggaatatatattacttctctcaaatcagtccaacgacatttccaatacggagaagtcctaccacatggtatgtaaaggtatacacgtagagatgaaaccagatttcctgcatgatggtgacagattatctgcagttgatttattaaggccaaggatttacatatggatttaatcttgtggcaccttggagttcacgcatacctgtcaataatagatttctatcatttgaaccccaacatgcccatttggctatttgggatgcaccattatttcgcataattttctatcctccacaatctaatatatgagcactcgaggtctcttattaagtcaataatatagaggagtgatatgcttccttatctccctttccccctatttttagtcgttactacaaatttttttttctttttgcaaggatttcttttttatttttgtgagaaatatctttttattttcttttagtgaaaactatcgtttttatttttcttgaataagcatgttcaattatcatatataatcatgaattataaactaaaataactgcaacttatcatacgatatttgtgaaagcgatgatacatttgaatgaagggatccatgtaatcacaaattcagagcgaaaatgaagtcttgtcgtaattatgtgatatatgttggcaggtaaagtgtcgatcacctggttcgggccagtgcccagggtgaccatcaccaagcctgagctggtgcgagaagtgctgtccaacaagttcggccacttcgagaagctcaagtttggacgtttccagaggttgctgcacaacggattgggcagccacgagggcgagaaatgggccaagcacaggaggatcatcaacccggccttccatctcgagaagctcaaggtgagagagatatttctgtcacggacatggcaacagtgatcgggcctaggcgccgttgtttcggactaattttttcttctcaataatcagcgcatgttgccagctttcgctgcatgttgcaccgagctggtggacaagtgggaaggtttagccaaaggaggtgatgagccgtacgaagttgatgtttggccggagatgcagagcctgacaggggatgtcatctcacgcgccgcattcggcagcagctaccttgaaggcaagaggattttccagctccagggtgagcagatcgagctcatcgtcgccaccatgaataagatacatatccctggttacatgtgagctcccttctcactttcatcatctctcgttcggcccatttcccctgcaaagttcatatgttttcctcctgctgatagtagcaaacggtagtgcaatgaattccacgcgacaaaatgaatgatctgacgtgtttgcgatgcagacacctgccgaccaaatccaaccggaggatgaagcagatcgctgcggagatcgaagggatgctgaaacgcatcatcgcgaagagagagagcgccttgaaggccggcgaggcaagcagcgacgacgatctcctcggcctcctgctggagtccaacctggaccacagcaagggcaacggcggcgccgcgagctccggcatctcgatcgacgacgtgatcggggagtgcaagctgttctacttcgccggcatggagaccacgtcggtgctgctcacctggacgatggtcgtgctctccatgcacccggagtggcaggaccgcgcccgggaggaggtcctccacgtcttcggcagccgcgccccggattacgacggcttaagccgcctaagaatcgtaagcacttcgacacgattaactgatgattcacgaaattaaagatataaaagtctaatttgggttttgggttttgggttttgcaggtgaccatggtgttgtacgaggtgctgcggctgtacacgccgctgacggcgctgcagaggaagacgtacaagccgatggagctcggcggggtgaggtacccggcgggcgtggtgctgacgctgccgctgctgtgcgtgcaccacgacaaggacgtgtggggcgcggacgccgacgagttcaggccggagaggttcgcggaggggatctccaaggcgtccagggaggcgccggccttcttcccgttcgggtgggggccgaggatctgcatcggccagaacttcgcgctgctcgaggccaagatgggcctctccatgatcctgcagcgcttctccttcgacctctcgccgtcctacacccacgcgccgttccccgtcggcctgcttcagccggagcacggcgcgcaggtcaggctcacgaggctaaactgatgacaaacacctcctgggtcctgtcctagacgagaactgcatgctcggtcggtctatcttttttctagtctgaatgtacagcataattggtgcatggacaatgtgttcagaacaagtcaaattacctgaactaggagcggttgtgaacTttttttttattttagttttttgtgatgtttgttaagtgcttttgattcgctcggatggttgtacaaaatgtgtcagtcacgtgtgctctcatgaagagtggacctatgtacatttaagaagatgacacctaatgttgtgtacttgtgtct
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| CDS seq | atggggatggtcgtcttcgccgcaggtgacgagcggccgctgatgcttgtgtgggcggcggtcgcgggcgcagtgctcgcgtggtgcgccgtgcgggcgatggagtgggcgtggtggaggccgcggcgcctggagcgggcgctccgtgcccagggcctccgcggcacgccgtaccgctccccggcgggcgacgcgccgctcaacgtgcagctcagcgccgaggcgagggcgcggaccatgccgctcggctgccacgacgtcgtgccgcgcgcgatgccgctgttccaccaggccatgaaggagcacggtaaagtgtcgatcacctggttcgggccagtgcccagggtgaccatcaccaagcctgagctggtgcgagaagtgctgtccaacaagttcggccacttcgagaagctcaagtttggacgtttccagaggttgctgcacaacggattgggcagccacgagggcgagaaatgggccaagcacaggaggatcatcaacccggccttccatctcgagaagctcaagcgcatgttgccagctttcgctgcatgttgcaccgagctggtggacaagtgggaaggtttagccaaaggaggtgatgagccgtacgaagttgatgtttggccggagatgcagagcctgacaggggatgtcatctcacgcgccgcattcggcagcagctaccttgaaggcaagaggattttccagctccagggtgagcagatcgagctcatcgtcgccaccatgaataagatacatatccctggttacatacacctgccgaccaaatccaaccggaggatgaagcagatcgctgcggagatcgaagggatgctgaaacgcatcatcgcgaagagagagagcgccttgaaggccggcgaggcaagcagcgacgacgatctcctcggcctcctgctggagtccaacctggaccacagcaagggcaacggcggcgccgcgagctccggcatctcgatcgacgacgtgatcggggagtgcaagctgttctacttcgccggcatggagaccacgtcggtgctgctcacctggacgatggtcgtgctctccatgcacccggagtggcaggaccgcgcccgggaggaggtcctccacgtcttcggcagccgcgccccggattacgacggcttaagccgcctaagaatcgtgaccatggtgttgtacgaggtgctgcggctgtacacgccgctgacggcgctgcagaggaagacgtacaagccgatggagctcggcggggtgaggtacccggcgggcgtggtgctgacgctgccgctgctgtgcgtgcaccacgacaaggacgtgtggggcgcggacgccgacgagttcaggccggagaggttcgcggaggggatctccaaggcgtccagggaggcgccggccttcttcccgttcgggtgggggccgaggatctgcatcggccagaacttcgcgctgctcgaggccaagatgggcctctccatgatcctgcagcgcttctccttcgacctctcgccgtcctacacccacgcgccgttccccgtcggcctgcttcagccggagcacggcgcgcaggtcaggctcacgaggctaaactga
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| Protein seq | MGMVVFAAGDERPLMLVWAAVAGAVLAWCAVRAMEWAWWRPRRLERALRAQGLRGTPYRSPAGDAPLNVQLSAEARARTMPLGCHDVVPRAMPLFHQAMKEHGKVSITWFGPVPRVTITKPELVREVLSNKFGHFEKLKFGRFQRLLHNGLGSHEGEKWAKHRRIINPAFHLEKLKRMLPAFAACCTELVDKWEGLAKGGDEPYEVDVWPEMQSLTGDVISRAAFGSSYLEGKRIFQLQGEQIELIVATMNKIHIPGYIHLPTKSNRRMKQIAAEIEGMLKRIIAKRESALKAGEASSDDDLLGLLLESNLDHSKGNGGAASSGISIDDVIGECKLFYFAGMETTSVLLTWTMVVLSMHPEWQDRAREEVLHVFGSRAPDYDGLSRLRIVTMVLYEVLRLYTPLTALQRKTYKPMELGGVRYPAGVVLTLPLLCVHHDKDVWGADADEFRPERFAEGISKASREAPAFFPFGWGPRICIGQNFALLEAKMGLSMILQRFSFDLSPSYTHAPFPVGLLQPEHGAQVRLTRLN |
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| Function | Cytochrome P450 72A15 [UniProtKB/Swiss-Prot:Q9LUC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0025010 | OsLima_01g0025010.01 | Chr01 | 26589960 | 26594056 | + | NAM | ||
| CDS seq | atggggatggtcgtcttcgccgcaggtgacgagcggccgctgatgcttgtgtgggcggcggtcgcgggcgcagtgctcgcgtggtgcgccgtgcgggcgatggagtgggcgtggtggaggccgcggcgcctggagcgggcgctccgtgcccagggcctccgcggcacgccgtaccgctccccggcgggcgacgcgccgctcaacgtgcagctcagcgccgaggcgagggcgcggaccatgccgctcggctgccacgacgtcgtgccgcgcgcgatgccgctgttccaccaggccatgaaggagcacggtaaagtgtcgatcacctggttcgggccagtgcccagggtgaccatcaccaagcctgagctggtgcgagaagtgctgtccaacaagttcggccacttcgagaagctcaagtttggacgtttccagaggttgctgcacaacggattgggcagccacgagggcgagaaatgggccaagcacaggaggatcatcaacccggccttccatctcgagaagctcaagcgcatgttgccagctttcgctgcatgttgcaccgagctggtggacaagtgggaaggtttagccaaaggaggtgatgagccgtacgaagttgatgtttggccggagatgcagagcctgacaggggatgtcatctcacgcgccgcattcggcagcagctaccttgaaggcaagaggattttccagctccagggtgagcagatcgagctcatcgtcgccaccatgaataagatacatatccctggttacatacacctgccgaccaaatccaaccggaggatgaagcagatcgctgcggagatcgaagggatgctgaaacgcatcatcgcgaagagagagagcgccttgaaggccggcgaggcaagcagcgacgacgatctcctcggcctcctgctggagtccaacctggaccacagcaagggcaacggcggcgccgcgagctccggcatctcgatcgacgacgtgatcggggagtgcaagctgttctacttcgccggcatggagaccacgtcggtgctgctcacctggacgatggtcgtgctctccatgcacccggagtggcaggaccgcgcccgggaggaggtcctccacgtcttcggcagccgcgccccggattacgacggcttaagccgcctaagaatcgtgaccatggtgttgtacgaggtgctgcggctgtacacgccgctgacggcgctgcagaggaagacgtacaagccgatggagctcggcggggtgaggtacccggcgggcgtggtgctgacgctgccgctgctgtgcgtgcaccacgacaaggacgtgtggggcgcggacgccgacgagttcaggccggagaggttcgcggaggggatctccaaggcgtccagggaggcgccggccttcttcccgttcgggtgggggccgaggatctgcatcggccagaacttcgcgctgctcgaggccaagatgggcctctccatgatcctgcagcgcttctccttcgacctctcgccgtcctacacccacgcgccgttccccgtcggcctgcttcagccggagcacggcgcgcaggtcaggctcacgaggctaaactga
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| Protein seq | MGMVVFAAGDERPLMLVWAAVAGAVLAWCAVRAMEWAWWRPRRLERALRAQGLRGTPYRSPAGDAPLNVQLSAEARARTMPLGCHDVVPRAMPLFHQAMKEHGKVSITWFGPVPRVTITKPELVREVLSNKFGHFEKLKFGRFQRLLHNGLGSHEGEKWAKHRRIINPAFHLEKLKRMLPAFAACCTELVDKWEGLAKGGDEPYEVDVWPEMQSLTGDVISRAAFGSSYLEGKRIFQLQGEQIELIVATMNKIHIPGYIHLPTKSNRRMKQIAAEIEGMLKRIIAKRESALKAGEASSDDDLLGLLLESNLDHSKGNGGAASSGISIDDVIGECKLFYFAGMETTSVLLTWTMVVLSMHPEWQDRAREEVLHVFGSRAPDYDGLSRLRIVTMVLYEVLRLYTPLTALQRKTYKPMELGGVRYPAGVVLTLPLLCVHHDKDVWGADADEFRPERFAEGISKASREAPAFFPFGWGPRICIGQNFALLEAKMGLSMILQRFSFDLSPSYTHAPFPVGLLQPEHGAQVRLTRLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.136427 | 0.117832 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0628700 | RBH | 3.367444 | 2.029474 | 2.174823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43844 | RBH | 1.801183 | 1.162320 | 0.556037 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0628700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026020 | SBH | 0.977969 | 13.618490 | 1.639689 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025660 | RBH | 0.186099 | 7.189342 | 2.121235 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025990 | RBH | 3.066462 | 10.867725 | 1.865559 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025310 | RBH | 0.276489 | 0.446796 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025050 | RBH | 3.178464 | 0.000000 | 0.279552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0421200 | RBH | 8.194545 | 65.0984915 | 0.481794 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024720 | RBH | 0.422613 | 0.815378 | 0.089785 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385300 | SBH | 5.83854 | 4.3827855 | 1.476269 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024960 | SBH | 1.122906 | 0.108676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024970 | RBH | 0.616296 | 6.771166 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025230 | RBH | 8.338398 | 11.748744 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025240 | RBH | 0.268269 | 0.396007 | 0.489102 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025110 | RBH | 0.629048 | 6.607557 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025360 | RBH | 0.571578 | 2.516854 | 0.601031 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025100 | SBH | 0.0 | 0.000000 | 0.227597 |
