Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_01g0022450 | OGI:01071410 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:24168436-24170849 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | gcatcaaccggctatcagtatatcacaatgcaattttcatttacattcaaaatctttaacacgaagtcacgaacacagttggatataaagtattcctgatggaacccacgaacaacttgatttctctccaatcaggcttcaacaaaaatagaaaatacaaaagcttaaaagccttaaagagaaccatttcatctgtgactacaaggccgcacagatgataaggttttaggaaaatacataacatacagcaacaggagacaacactggtattgtgttgctgcctggttttgcatgcagcatctcaccacaatccagttcagtagtattcatctcaccacaatccacttcagtagtattccttctcaccacaatccacttcagtagtattcgttaccagcgctgtccgaaaccatgtccattgaggtgtcattggagcctccagagttggtctccctattctgtcctgcagagtttgtttctgcattccggcctccattaccagatccttgggttaaatgatagctctgaaggctccgacggaccgggcttgataaagcatttgagaaaattgtattctttgactgatcactgatgctgggtctaggcgcaaatcctactgttgcttgaccataggaaccagctgagggttggatgcttgagtttgcaaacggatttgcactatgctgatgtactctgggggaaacatgtggatcattacctccataatccaactcatgctgtcaaagatgaaaaatgtgtatatcagtgactaaaacaaagttcgaaacagatgcaagacatattagacaggaaagctatcaaaacattctggctatcaagttcatgcttcacaaagtttgatggaacacaacttgattcccatcaaactctgatatctcccatctcatggtaatgagaggcatatttcataaaattttattctgtgaagcacgggttgtaagttagaaaaacttgttttagttttggatgacaatgcacaaacagttgcctgaaactcgcttccaaaagataaaagaagtaatttttttttcacgggaaagaaaactatctgttaaagtttgagatggatgatacaatctgcatttctaagctagttcatactcaagttattaatagaaaacaaggcagaaccataaggtaaggaaattcaaggttgaacctggatatgagacattatatcagccgccgtgagcctcgactcttcctcatgctttctcaatatccactggtggagtttttcctgcacaattaaaaatgaaatcaacaaaagtacattttcatgcaatttatcccatgacagcaactttaagttcgactagacaagcacttgacaatgctttaactggttatggcgtcgtagatagaagagaaatcttatcatgttctatgaccaacaaatacgagtcccaaaaggttgttaccaagttcaatgtgaagtttttgtttatctatcttgtagatatcctcaccatctacctataaaggatgaaccaaacaaaaagtttatactatactactcttgattaggattatatcgtcgaagcaaagccacccaatttccatcaggacaaaaaaaagatacaccctagacatctccaaacgattcctacattgcatcctttactagtgatatagcacatcagacgaacttatccaccataagattccgaatgacgatgtatgagtgaacgaatgaattaatcaaatctctcccaccaccatcgtcaaagctccacgctccaccattcatccatacagcagaaacaacaacaacaacaacaacaataataataataataataataataataataataataataataataataacatgacgcggaggcggaagccaaggaaccaatcgaattcccgacgaccgaaccgcgagaggtggagggggagatggggggaaagggagggagggagggaggtgtacggacgagggagtggcgctcgccggcctggaaggagagcttctgctgggccatggcctgggtgtagagctgggagagggagttggcggcgccgcagaaggtggagtagagcgtccggtcggcctcgtccagccgcggcgccgcgtccgtcttcctcttccgggccatcgccgccgccgccgccggagatcgtgggggaggagggaaggcggcggatggcggaggaggagggtttgctgctgcgatttttttttctcctcctctcttgtgatttttttccccctcgtcttctctcttctctctctaattttccacgggtgggtgtatacgaggggtgcgtgcccttttcaaatgaatcgtgtggcgtttttggctgttttttggtcaaattcgggaggagttttgggggttttttttttttttggctttttgggattgggtttggtgtggaggagg
More
|
||||||||||
CDS seq | atggcccggaagaggaagacggacgcggcgccgcggctggacgaggccgaccggacgctctactccaccttctgcggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctccttccaggccggcgagcgccactccctcgaaaaactccaccagtggatattgagaaagcatgaggaagagtcgaggctcacggcggctgatataatgtctcatatccagcatgagttggattatggaggtaatgatccacatgtttcccccagagtacatcagcatagtgcaaatccgtttgcaaactcaagcatccaaccctcagctggttcctatggtcaagcaacagtaggatttgcgcctagacccagcatcagtgatcagtcaaagaatacaattttctcaaatgctttatcaagcccggtccgtcggagccttcagagctatcatttaacccaaggatctggtaatggaggccggaatgcagaaacaaactctgcaggacagaatagggagaccaactctggaggctccaatgacacctcaatggacatggtttcggacagcgctggtaacgaatactactga
More
|
||||||||||
Protein seq | MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSGGSNDTSMDMVSDSAGNEYY |
||||||||||
Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_01g0022450 | OsLima_01g0022450.01 | Chr01 | 24168436 | 24170849 | - | NAM | ||
CDS seq | atggcccggaagaggaagacggacgcggcgccgcggctggacgaggccgaccggacgctctactccaccttctgcggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctccttccaggccggcgagcgccactccctcgaaaaactccaccagtggatattgagaaagcatgaggaagagtcgaggctcacggcggctgatataatgtctcatatccagcatgagttggattatggaggtaatgatccacatgtttcccccagagtacatcagcatagtgcaaatccgtttgcaaactcaagcatccaaccctcagctggttcctatggtcaagcaacagtaggatttgcgcctagacccagcatcagtgatcagtcaaagaatacaattttctcaaatgctttatcaagcccggtccgtcggagccttcagagctatcatttaacccaaggatctggtaatggaggccggaatgcagaaacaaactctgcaggacagaatagggagaccaactctggaggctccaatgacacctcaatggacatggtttcggacagcgctggtaacgaatactactga
More
|
|||||||
Protein seq | MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSGGSNDTSMDMVSDSAGNEYY |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 1.508538 | 0.718070 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0589500 | RBH | 7.151306 | 10.249522 | 16.077501 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g40690 | RBH | 3.834880 | 5.356324 | 3.226419 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0589500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023520 | RBH | 1.572149 | 39.313763 | 12.157949 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023090 | RBH | 0.960129 | 3.164973 | 6.775970 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023420 | RBH | 2.208606 | 41.770309 | 14.791543 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022830 | RBH | 0.786071 | 0.526654 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022520 | RBH | 20.858204 | 21.777077 | 31.501131 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0383800 | SBH | 7.219013 | 15.884262 | 20.7731015 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022460 | RBH | 0.696393 | 2.284057 | 2.439885 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0372900 | RBH | 17.011303 | 38.705015 | 35.5723935 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007390 | SBH | 0.227386 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022400 | RBH | 2.567374 | 32.897747 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022680 | RBH | 20.423851 | 29.729733 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022700 | RBH | 1.284718 | 3.306583 | 1.742791 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022510 | RBH | 1.356293 | 15.726650 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022840 | RBH | 2.394796 | 6.215268 | 5.463416 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022510 | RBH | 4.421729 | 36.862392 | 17.307812 |