Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g40690 | OGI:01071410 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:22996030-22998507 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTGCATCAACCGGCTATCAGTATATCACAATGCAATTTTCATTTACATTCAAAATCTTTAACACGAAGTCACGAACACAGTTGGATATAAAGTATTCCTGATGGAACCCACGAACAACTTGATTTCTCTCCAATCAGGCTTCAACAAAAATAGAAAATACAAAAGCTTAAAAGCCTTAAAGAGAACCATTTCATCTGTGACTACAAGGCCGCACAGATGATAAGGTTTTAGGAAAATACATAACATACAGCAACAGGAGACAACACTGGTATTGTGTTGCTGCCTGGTTTTGCATGCAGCATCTCACCACAATCCAGTTCAGTAGTATTCATCTCACCACAATCCACTTCAGTAGTATTCCTTCTCACCACAATCCACTTCAGTAGTATTCGTTACCAGCGCTGTCCGAAACCATGTCCATTGAGGTGTCATTGGAGCCTCCAGAGTTGGTCTCCCTATTCTGTCCTGCAGAGTTTGTTTCTGCATTCCGGCCTCCATTACCAGATCCTTGGGTTAAATGATAGCTCTGAAGGCTCCGACGGACCGGGCTTGATAAAGCATTTGAGAAAATTGTATTCTTTGACTGATCACTGATGCTGGGTCTAGGCGCAAATCCTACTGTTGCTTGACCATAGGAACCAGCTGAGGGTTGGATGCTTGAGTTTGCAAACGGATTTGCACTATGCTGATGTACTCTGGGGGAAACATGTGGATCATTACCTCCATAATCCAACTCATGCTGTCAAAGATGAAAAATGTGTATATCAGTGACTAAAACAAAGTTCGAAACAGATGCAAGACATATTAGACAGGAAAGCTATCAAAACATTCTGGCTATCAAGTTCATGCTTCACAAAGTTTGATGGAACACAACTTGATTCCCATCAAACTCTGATATCTCCCATCTCATGGTAATGAGAGGCATATTTCATAAAATTTTATTCTGTGAAGCATGGGTTGTAAGTTAGAAAAACTTGTTTTAGTTTTGGATGACAATGCACAAACAGTTGCCTGAAACTCGCTTCCAAAAGATAAAAGAAGTAATTTTTTTTTCACGGGAAAGAAAACTATCTGTTAAAGTTTGAGATGGATGATACAATCTGCATTTCTAAGCTAGTTCATACTCAAGTTATTAATAGAAAACAAGGCAGAACCATAAGGTAAGGAAATTCAAGGTTGAACCTGGATATGAGACATTATATCAGCCGCCGTGAGCCTCGACTCTTCCTCATGCTTTCTCAATATCCACTGGTGGAGTTTTTCCTGCACAATTAAAAATGAAATCAACAAAAGTACATTTTCATGCAATTTATCCCATGACAGCAACTTTAAGTTCGACTAGACAAGCACTTGACAATGCTTTAACTGGTTATGGCGTCGTAGATAGAAGAGAAATCTTATCATGTTCTATGACCAACAAATACGAGTCCCAAAAGGTTGTTACCAAGTTCAATGTGAAGTTTTTGTTTATCTATCTTGTAGATATCCTCACCATCTACCTATAAAGGATGAACCAAACAAAAAGTTTATACTATACTACTCTTGATTAGGATTATATCGTCGAAGCAAAGCCACCCAATTTCCATCAGGACAAAAAAAAGATACACCCTAGACATCTCCAAACGATTCCTACATTGCATCCTTTACTAGTGATATAGCACATCAGACGAACTTATCCACCATAAGATTCCGAATGACGATGTATGAGTGAACGAATGAATTAATCAAATCTCTCCCACCACCATCGTCAAAGCTCCACGCTCCACCATTCATCCATACAGCAGAAACAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACATGACGCGGAGGCGGAAGCCAAGGAACCAATCGAATTCCCGACGACCGAACCGCGAGAGGTGGAGGGGGAGATGGGGGGAAAGGGAGGGAGGGAGGGAGGTGTACGGACGAGGGAGTGGCGCTCGCCGGCCTGGAAGGAGAGCTTCTGCTGGGCCATGGCCTGGGTGTAGAGCTGGGAGAGGGAGTTGGCGGCGCCGCAGAAGGTGGAGTAGAGCGTCCGGTCGGCCTCGTCCAGCCGCGGCGCCGCGTCCGTCTTCCTCTTCCGGGCCATCGCCGCCGCCGCCGCCGGAGATCGTGGGGGAGGAGGGAAGGCGGCGGATGGCGGAGGAGGAGGGTTTGCTGCTGCGATTTTTTTTTCTCCTCCTCTCTTGTGATTTTTTTCCCCCTCGTCTTCTCTCTTCTCTCTCTAATTTTCCACGGGTGGGTGTATACGAGGGGTGCGTGCCCTTTTCAAATGAATCGTGTGGCGTTTTTGGCTGTTTTTTGGTCAAATTCGGGAGGAGTTTTGGGGTTTTTTTTTTTTTGGCTTTTTGGGATTGGGTTTGGTGTGGAGGAGGTGGTGAGTCACGTGACACACTGACGCGTGAT
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| CDS seq | ATGGCCCGGAAGAGGAAGACGGACGCGGCGCCGCGGCTGGACGAGGCCGACCGGACGCTCTACTCCACCTTCTGCGGCGCCGCCAACTCCCTCTCCCAGCTCTACACCCAGGCCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCACGGCGGCTGATATAATGTCTCATATCCAGCATGAGTTGGATTATGGAGGTAATGATCCACATGTTTCCCCCAGAGTACATCAGCATAGTGCAAATCCGTTTGCAAACTCAAGCATCCAACCCTCAGCTGGTTCCTATGGTCAAGCAACAGTAGGATTTGCGCCTAGACCCAGCATCAGTGATCAGTCAAAGAATACAATTTTCTCAAATGCTTTATCAAGCCCGGTCCGTCGGAGCCTTCAGAGCTATCATTTAACCCAAGGATCTGGTAATGGAGGCCGGAATGCAGAAACAAACTCTGCAGGACAGAATAGGGAGACCAACTCTGGAGGCTCCAATGACACCTCAATGGACATGGTTTCGGACAGCGCTGGTAACGAATACTACTGA
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| Protein seq | MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSGGSNDTSMDMVSDSAGNEYY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40690 | LOC_Os01g40690.1 | Chr01 | 22996030 | 22998507 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCCGGAAGAGGAAGACGGACGCGGCGCCGCGGCTGGACGAGGCCGACCGGACGCTCTACTCCACCTTCTGCGGCGCCGCCAACTCCCTCTCCCAGCTCTACACCCAGGCCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCACGGCGGCTGATATAATGTCTCATATCCAGCATGAGTTGGATTATGGAGGTAATGATCCACATGTTTCCCCCAGAGTACATCAGCATAGTGCAAATCCGTTTGCAAACTCAAGCATCCAACCCTCAGCTGGTTCCTATGGTCAAGCAACAGTAGGATTTGCGCCTAGACCCAGCATCAGTGATCAGTCAAAGAATACAATTTTCTCAAATGCTTTATCAAGCCCGGTCCGTCGGAGCCTTCAGAGCTATCATTTAACCCAAGGATCTGGTAATGGAGGCCGGAATGCAGAAACAAACTCTGCAGGACAGAATAGGGAGACCAACTCTGGAGGCTCCAATGACACCTCAATGGACATGGTTTCGGACAGCGCTGGTAACGAATACTACTGA
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| Protein seq | MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSGGSNDTSMDMVSDSAGNEYY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40690 | LOC_Os01g40690.2 | Chr01 | 22996030 | 22997792 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGCTATATCACTAGTAAAGGATGCAATGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCACGGCGGCTGATATAATGTCTCATATCCAGCATGAGTTGGATTATGGAGGTAATGATCCACATGTTTCCCCCAGAGTACATCAGCATAGTGCAAATCCGTTTGCAAACTCAAGCATCCAACCCTCAGCTGGTTCCTATGGTCAAGCAACAGTAGGATTTGCGCCTAGACCCAGCATCAGTGATCAGTCAAAGAATACAATTTTCTCAAATGCTTTATCAAGCCCGGTCCGTCGGAGCCTTCAGAGCTATCATTTAACCCAAGGATCTGGTAATGGAGGCCGGAATGCAGAAACAAACTCTGCAGGACAGAATAGGGAGACCAACTCTGGAGGCTCCAATGACACCTCAATGGACATGGTTTCGGACAGCGCTGGTAACGAATACTACTGA
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| Protein seq | MCYITSKGCNEKLHQWILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSGGSNDTSMDMVSDSAGNEYY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.834880 | 5.356324 | 3.226419 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0589500 | RBH | 7.151306 | 10.249522 | 16.077501 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19640 | SBH | 1.392899 | 1.225396 | 1.919105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0589500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023520 | RBH | 1.572149 | 39.313763 | 12.157949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023090 | RBH | 0.960129 | 3.164973 | 6.775970 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023420 | RBH | 2.208606 | 41.770309 | 14.791543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022830 | RBH | 0.786071 | 0.526654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022520 | RBH | 20.858204 | 21.777077 | 31.501131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0383800 | SBH | 7.219013 | 15.884262 | 20.7731015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022460 | RBH | 0.696393 | 2.284057 | 2.439885 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0372900 | RBH | 17.011303 | 38.705015 | 35.5723935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022450 | RBH | 1.508538 | 0.718070 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022400 | RBH | 2.567374 | 32.897747 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022680 | RBH | 20.423851 | 29.729733 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022700 | RBH | 1.284718 | 3.306583 | 1.742791 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022510 | RBH | 1.356293 | 15.726650 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022840 | RBH | 2.394796 | 6.215268 | 5.463416 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022510 | RBH | 4.421729 | 36.862392 | 17.307812 |
