Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0018420 | OGI:01058130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:19381576-19384553 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatgtcataataaggtgtgagatttgggtacctgctacacttttttttaatagtagcccaaaatctttatatcatcagcagattgatccttgtacacataaggaccacttaggtaccacgaacctgcagcacaatgataatattcttcaacacatcattgatttgcttgatcagggatggaagaaaaattcaagggggacaacataagagcaatcagacaacaatatcaagaaaaacagtagttacctttttgtatttgtgaaatttaaagaactactactatgccggaccatgccaatcaaggttgaaaataacaagccaatatgaaggcaaaattaattagattcatggaatgcaattcggttgcacgctcctagcacggaggtcgggaacacaacacaccttgtgcttcaataaaatgtctctaaagaaagatgcatcatttcttttaatatatctgtctttggatccactcaaaccaaattttaagagattggtctttgggcaggttcattgtgaggcaatctaagccttggtaatgaaaagataaacactcaaattcctggaccagagaaatggatcaatttttatagtcagaattagaattgttccatgccaagttgagttcatctaataggtactactcaaatataggtctttgcccttgcttgaccagtgaaccgttatcttataaaatagtaaaaactaaaagtaaagaaataatcttgcacgtatggatattaccttcatgttgtgcttacggagtatatgaaattagatacatcaactagagaccaatcaatgctaaataaaagaacaaaatctcctcgaccaacatcctggatagatatggagacatgttgatcatctatattaaggagttcatgtggtcctgctcctctgcctctgtctgaagtttgggtagcctgaaacaatggaattgttaaaactaaacacaagacagtctaattagttgaccaacagttgtcgtactgattagttcgccaattccccttgacctttgtcaaatgcaccttcatatgcacaacaatttactcacatagaaattccattgaatatcttgcaaatgaatgaaattgtgaatctaacactacagctaatgatttctagaggaaaagcataatcactgaataaacgaacccttttttttcttgggagcaagcataatgtaccttgtttgtgtggatatgttgtttaaccaaaaggagctccaagacaccattgtctagagcctccatattatctagagcactataaacaaaatatgctagctgtgtactgtttagcagtcccaagtcacataaaccaagctactaggaataaatcataattgagcttaatcattgattttctacttttgtggagtatggaacaaaactacaaataaataacaaaaccattccttgatatgtctatatgtacatatcacgaaacataatgtatatacatgaatattcaccaaatgaagtcatatccacgctgttttgtgtagtgagcttaatcaagtagctcttggggattagcaccggatcaatagggcatgttgaactgttagtcgatgcagtagttcgatgcacacaaaccaccacgaccactcacgggtgaaacataataaagaaccttaggattatacctgaccgtttaggttcctattcttcttgacctggcgaagaaatatttcagctcctgcacttttctattgcagcatgtacggagataaatcaaattgattgctgcatataatttattatagaatttgtcatgttaattcagagtgcaagggaaacaataccttagaggtaagcactgtcaccgtctgaagtagctagaaggctctcagaatacatgatcgtgttgtagtgtctagagattatttcgggtaaacactctacataatctttctacaagcctttgcattagcattggacatgtatctttttctaattactctgatttctaatcctttaaccaaagtctcccatgtgtatagcatagttcagttaatcagttggtgcaaataacatggagccatcacaatttcgtcatcagttggttgcaaactgtaatgcctgaaaaaagattgaccaagaacattaacaacaatatttagcttctgacaaagttttctctccacacagcaagtgtaacaacagcaggaaaaaagtaattttcttaataaaactcgcaggaatatcaagcgacggagggtgcgcaggtgttggcggacaggacgacacaaccggcgttggggcagtggaggaggatctgacgacgacggctgcatggcagcgacggtggccgtcgcgagattgatggcagcgcggagagaggatatcggcgaggcgaaggacgacgcgtgggtgatggggaggcggacgcggcggcggcagcggtggcaggtcagggaggcacagcaacgcgggggcggtgggaaggaggaggacgcggcggcggtggacaggacggcgcgacatgtgttagggatcgagagctggaccaccgttgccgagttcaccccgtcggcggatctgacgacgactgttgagccggcgaaggggactcggggatggtgaccgccgcgggattgatggtggcgctgagagaggagatcggcgaggcaatggcgggcaatggcgggtgatggggaggaggaggacgcgacggcggtgggtgaggaggaggacaacgcggaggcggtgtggaggaggcaatgcagcagcggtgagtgtgaaggaggacgacgcggaggcgatggggaggaggcgatgcagtggcggtgggtggggaggaggaggacacggcgacagtggcaggtcagggagattcggcggcgcgggggtgtggcaggaaggggttcgagagcggtagtagcgagtaccgcgggcgaagtcttcgtgcggtgatgggagcgaaaatcacggtggagataggatggagttgcggaaatacttcccat
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| CDS seq | atgggaagtatttccgcaactccatcctatctccaccgtgattttcgctcccatcaccgcacgaagacttcgcccgcggtactcgctactaccgctctcgaaccccttcctgccacacccccgcgccgccgaatctccctgacctgccactgtcgccgtgtcctcctcctccccacccaccgccactgcatcgcctcctccccatcgcctccgcgtcgtcctccttcacactcaccgctgctgcattgcctcctccacaccgcctccgcgttgtcctcctcctcacccaccgccgtcgcgtcctcctcctccccatcacccgccattgcccgccattgcctcgccgatctcctctctcagcgccaccatcaatcccgcggcggtcaccatccccgagtccccttcgccggctcaacagtcgtcgtcagatccgccgacggggtgaactcggcaacggtggtccagctctcgatccctaacacatgtcgcgccgtcctccgtcgtcgtcagatcctcctccactgccccaacgccggttgtgtcgtcctgtccgccaacacctgcgcaccctccgctacccaaacttcagacagaggcagaggagcaggaccacatgaactccttaatatagatgatcaacatgtctccatatctatccaggatgttggtcgaggagattttgttcttttatttagcattgattggtctctagttgatgtatctaatttcatatactccgtaagcacaacatga
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| Protein seq | MGSISATPSYLHRDFRSHHRTKTSPAVLATTALEPLPATPPRRRISLTCHCRRVLLLPTHRHCIASSPSPPRRPPSHSPLLHCLLHTASALSSSSPTAVASSSSPSPAIARHCLADLLSQRHHQSRGGHHPRVPFAGSTVVVRSADGVNSATVVQLSIPNTCRAVLRRRQILLHCPNAGCVVLSANTCAPSATQTSDRGRGAGPHELLNIDDQHVSISIQDVGRGDFVLLFSIDWSLVDVSNFIYSVSTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0018420 | OsLima_01g0018420.01 | Chr01 | 19381576 | 19384553 | - | NAM | ||
| CDS seq | atgggaagtatttccgcaactccatcctatctccaccgtgattttcgctcccatcaccgcacgaagacttcgcccgcggtactcgctactaccgctctcgaaccccttcctgccacacccccgcgccgccgaatctccctgacctgccactgtcgccgtgtcctcctcctccccacccaccgccactgcatcgcctcctccccatcgcctccgcgtcgtcctccttcacactcaccgctgctgcattgcctcctccacaccgcctccgcgttgtcctcctcctcacccaccgccgtcgcgtcctcctcctccccatcacccgccattgcccgccattgcctcgccgatctcctctctcagcgccaccatcaatcccgcggcggtcaccatccccgagtccccttcgccggctcaacagtcgtcgtcagatccgccgacggggtgaactcggcaacggtggtccagctctcgatccctaacacatgtcgcgccgtcctccgtcgtcgtcagatcctcctccactgccccaacgccggttgtgtcgtcctgtccgccaacacctgcgcaccctccgctacccaaacttcagacagaggcagaggagcaggaccacatgaactccttaatatagatgatcaacatgtctccatatctatccaggatgttggtcgaggagattttgttcttttatttagcattgattggtctctagttgatgtatctaatttcatatactccgtaagcacaacatga
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| Protein seq | MGSISATPSYLHRDFRSHHRTKTSPAVLATTALEPLPATPPRRRISLTCHCRRVLLLPTHRHCIASSPSPPRRPPSHSPLLHCLLHTASALSSSSPTAVASSSSPSPAIARHCLADLLSQRHHQSRGGHHPRVPFAGSTVVVRSADGVNSATVVQLSIPNTCRAVLRRRQILLHCPNAGCVVLSANTCAPSATQTSDRGRGAGPHELLNIDDQHVSISIQDVGRGDFVLLFSIDWSLVDVSNFIYSVSTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0511800 | RBH | 0.0 | 0.162899 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0511800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019180 | RBH | 0.0 | 0.792940 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0018800 | RBH | 0.0 | 0.0 | 0.654129 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0019080 | RBH | 0.0 | 1.170622 | 2.766334 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0018480 | RBH | 0.0 | 0.107886 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018410 | RBH | 0.000000 | 3.599773 | 3.592408 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0309300 | RBH | 0.558208 | 1.289531 | 2.8830895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0306100 | RBH | 0.862268 | 0.6483485 | 6.5260515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G018780 | RBH | 0.0 | 0.816989 | 1.231907 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018480 | RBH | 0.280121 | 0.000000 | 1.377304 |
