Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0016200 | OGI:01045310 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:15088316-15091810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccagccataattaattttccagcccataataaagcaagtttcagaatacagtttccaacatgttccatacaaaagaacgaaacatgaatacaaaatgttccatccaccatccaactacacaagtcccagccgactacgaagttcctacaggaagtgtcaagttcctgcaccAaaaaaattccacctagcagccactactaagtttcggcgtgcatcttgccagcagccaggaaaaaaattccaccaagcagccactgcacttccggcctgaatcctgccagctgccagcaactagtgccaaaaaatcctgttttccagcaaccaacgcaaaaaaaactccggccaccaaaagcgccaacctgcaagccaccagtagctagcaccaagttctagcagccacatacaccatacaatagcagccacatacaccaagttctgaagtaccaaaagcgatcacagcctcgaagttctactacactaacacgagccatcaaattccaagctcagccacctcattcctgccatcaaaaggtgcatgttttcagttgctggtgaataaaaagtccattttgtttggacttggaggcaaacaaatgaacaaatagtgtttagagtaataatccagcaggtaaattgagtaataacaatatattgatatggctcttttccataaagtccaaacaaatggctcttttctagtcacaactaaatccaaacaatggctcttttgcagctaataatccagaaaaaatagagtatctagatcgatcaatcaaatggctcttttccagtcacaactaaacaatatctaatttcatagtaacaacaactataaacaatccagcaagtaaattgaaataggcagagtaataggcaattttgatacacaccatgaacaaaaaattcagccaccaatgaaacagtacaataggcttgatatGgatgcaaaagcacaagagacaagttaaagctatgcacctgagcatacaactagcttagggaggactgatctgaccctgtccaaatgccatcatttgtcgaaggaggccctgatgatgaagtgagggcttcccaggcatgcatatcctcctagcaatcaaagcaaggtttcagttttgcattattatataaataaaggttcattgcataaggtacttaataaaagaagcaaagaagatgtaatagttcagtacttactatagctttcttcacaggttcactaaaacctttagttttgctgcaatgcaactcattaaagagatcaattgcagtgggctcaccgtcaattgcagtacccatgctcttCccccttggctccacttgtctactgccagtgagggtgcctaacctaaaacgtttaaggacaaaagaacaagaatccaagttacttgccttgttcagtagagctcaatcccattggctccagttctgtacttaaagtgaggtcgctcaatcccattgccgccacccaatatggccacccagggcaaaggccccatctgcggcgcaaggaagggttgaggatgatggccagctgcggcgcgccctggttggggctccacccgccgatgctcaccagcgccaccagatcttgcagtcccgaggccttcattcctgtagtcacattctgcaagacagatgaagaaaggattagaagaaaagatcagaacattgcattagagttgcagaagcttgtgactagtaactgtttttgctaggcaaatctgtgagttgagtgattttaaggaacatatactctttgagcaagtttatagccaatttagtaaaaatctcacatcttatttacattcttacggggatatttctgtgacagacattatattggattatagaaggaatcaaagagatgctagccatgacctttcttctcaggaggtgatgcttcccttttaccagtgacattttctgctttatgaactacagactgaggtggagatgcagcagtagcttcccttcctacttcaactaccaactgcactaaaggatccaagctagaaaaaatttcttccttggagatatcatgatctatatacttggattgaactgagttcatattaatgctaccacacctaacattaataaaaaagaaggtgtttgTttttTCAAGAAGAATGCATGTGGTAAGTTTGGTACAGAGTAGAGATCAAAACAGTAAACAACAGCTGTGATCGGTTGGGCAGGCATAAACATCTTCCTAATTATAATTAGTTAACCATGCATTTTTGAAACACGGTTTCTTTCTAGACCAAGTCAAACTCTGACCCAAACTAACTCTTTGGATTATTTTAGTTATTAAATGTAGAAAAGCTATATTAAATAGGTAGATGCCTCCCTACTTTCCCAGTGAACATTGTTAAACCCACAAGTCAAACATGGATCACCCATTTTTTGTTAAAGAAACTATGCAATTTAGCACGCTTGACCTAAGAAGCTAAGACCAATCCTTGATAATACTAACATGCCTAACCATGCTCCTAATGCTTACCACTCCAAATTCAAGTAAGAAAGCTATTTTGTTATGTAACCTAAAAATAATTTTGAACTTGAGAATCATCGATATCGACACTAGAATACAAGTAGAGAGAAGCTTATAAATTTTAAGTACTAATTATGACTGTCAGAAACAATCAGAACTAATTACTGCTCTAATTTTCACAAAACAATCAGAACTAATTACTGCTGTAATTTTCACAAAGGAAGGATCAATCGGAGAATGGAAAAAAATTTGCTAATCACTACTCCATTTCAAGACTAATTCACACGAAAAACTGTCTACGAGAGAGGTTGTGAATCCTGCAAaaactgaatcctctactcgtcgtctttatctcggctacaaatcactccagcagcagcagcaatcaagcaccaacagaataccccaataaaccaccagatctggtgaaagcaacacatcaaccgcacggatccgcgaaagccagcatctcttctaccgatttcccaactcgacaagggagatgttaccctcacccagatcccgacgcgtcgctggcctgctgccctgcacccttgccccgcgccacgtgcccccacggCccgcgccacctgcccgcctcgcgattgcaagtcgccggccgccgctggtcatcgtcatcgtcatcgtcgccgctgtcgtcaccgtcgccgtcgttgcagccactgtagctgtcgtcgccgcagctgccgctgccgaagctgctcgctcccgcctacctaagcctgccgccgccgctccggaGggcggaggtGggtggatccgtgtgttgccggtgctcccgctcacgccaggccgctcccgaggacggaggccactggattcatgcgccgccgtcgctcccgaggacgggaggcggcgaatccgcgcgccaccgtccttccctggccGggggagcgacacggggAaaggcgaagaggtggctgggggcggcgcgatggattgaggaggagagggatgttggtggtGggggaatggat
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| CDS seq | atgaaggcctcgggactgcaagatctggtggcgctggtgagcatcggcgggtggagccccaaccagggcgcgccgcagctggccatcatcctcaacccttccttgcgccgcagatggggcctttgccctgggtggccatattgggtggcggcaatgggattgagcgacctcactttaagtacagaactggagccaatgggattgagctctactgaacaaggcaagttaggcaccctcactggcagtagacaagtggagccaaggggGaagagcatgggtactgcaattgacggtgagcccactgcaattgatctctttaatgagttgcattgcagcaaaactaaaggttttagtgaacctgtgaagaaagctatagaggatatgcatgcctgggaagccctcacttcatcatcagggcctccttcgacaaatgatggcatttggacagggtcagatcagtcctccctaagctag
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| Protein seq | MKASGLQDLVALVSIGGWSPNQGAPQLAIILNPSLRRRWGLCPGWPYWVAAMGLSDLTLSTELEPMGLSSTEQGKLGTLTGSRQVEPRGKSMGTAIDGEPTAIDLFNELHCSKTKGFSEPVKKAIEDMHAWEALTSSSGPPSTNDGIWTGSDQSSLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0016200 | OsLima_01g0016200.01 | Chr01 | 15088622 | 15090861 | - | NAM | ||
| CDS seq | atgaaggcctcgggactgcaagatctggtggcgctggtgagcatcggcgggtggagccccaaccagggcgcgccgcagctggccatcatcctcaacccttccttgcgccgcagatggggcctttgccctgggtggccatattgggtggcggcaatgggattgagcgacctcactttaagtacagaactggagccaatgggattgagctctactgaacaaggcaagttaggcaccctcactggcagtagacaagtggagccaaggggGaagagcatgggtactgcaattgacggtgagcccactgcaattgatctctttaatgagttgcattgcagcaaaactaaaggttttagtgaacctgtgaagaaagctatagaggatatgcatgcctgggaagccctcacttcatcatcagggcctccttcgacaaatgatggcatttggacagggtcagatcagtcctccctaagctag
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| Protein seq | MKASGLQDLVALVSIGGWSPNQGAPQLAIILNPSLRRRWGLCPGWPYWVAAMGLSDLTLSTELEPMGLSSTEQGKLGTLTGSRQVEPRGKSMGTAIDGEPTAIDLFNELHCSKTKGFSEPVKKAIEDMHAWEALTSSSGPPSTNDGIWTGSDQSSLS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0016200 | OsLima_01g0016200.02 | Chr01 | 15088316 | 15091810 | - | IsoSeq | ||
| CDS seq | atccattccccCaccaccaacatccctctcctcctcaatccatcgcgccgcccccagccacctcttcgccttTccccgtgtcgctccccCggccagggaaggacggtggcgcgcggattcgccgcctcccgtcctcgggagcgacggcggcgcatgaatccagtggcctccgtcctcgggagcggcctg |
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| Protein seq | IHSPTTNIPLLLNPSRRPQPPLRLSPCRSPGQGRTVARGFAASRPRERRRRMNPVASVLGSGL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr01 | 15089942 | 15091810 | - | OsLima_01g0016200.01 | OsLima_01g0016200.01,OsLima_01g0016200.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.668966 | 1.048055 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0361000 | RBH | 11.691644 | 10.265623 | 4.149907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25920 | RBH | 6.298401 | 5.608368 | 0.714257 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0361000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008900 | SBH | 1.285608 | 9.558104 | 6.500482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016480 | RBH | 0.961816 | 1.120513 | 3.797137 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016700 | RBH | 5.605223 | 9.652225 | 13.224448 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016230 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0248000 | RBH | 0.0165625 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0243200 | RBH | 0.007494 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008340 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016250 | RBH | 0.0 | 0.0 | 0.0 |
