Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_04g0008900 | OGI:04052440 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr04:14831324-14834823 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAATCACATTCCAGCCATAATTAATTTTCCAGCCCATACAAAAGCAAGTTCCAGAATACAGTTTCCAACATGTTCCATACAAAAGCACGAAACATGAATACAAAATATTCCATCCACCATCCAACTACACAAGTCCCAGCCGACTATGAAGTTCCTACAGGTAGTGTCAAGTTCCTGCGCCAAAAAAATTCCACCTAGCAGCCACTACTAAGTTTTGGCGTGCATCTTGCCAGCAGCCAGGAAAAAAATTCCACCAAGCAGCCACTGCACTTTCGGCCTGCATCCTACCAGCAGCCAACAACTAGTGCCAAAAAATCCTGTGTTCTAGCAACCAACGCAAAAAAAACTCCAGCCACCAAAAGTGCCAACCCGCAAGCAACCAGCAGCTAGCACCAAGTTCTAGCAGCCACATACACCATACAATAGCAGCCACATACACCACCAAGTTCTGAAGTACCAAAAGCGATCACAGCCTCGAAGTTCAACTACACTAACACGAGCCATCAAATTCCAAGCTCAGCCACCTCATTCCTGCCATCAAAAGGTGCATGTTTTCAGTTGATGGTGAATAAAAAGTCCATTTTGTTTGGACTTGGAGGCAAACAAATGAACAAACAGTGTTTAGAGTAATAATCCAGCAGGTAAATTGAGTAATAACAATATATTGATATGGCTCTTTTCCGTAAAGTCCAAACAAATGGCTCTTTTCTAGTCACAACTAAATCCAAACAAATGGCTCTTTTGCAGCTAATAATCCAGAAAAAAATAGAGTATCTAGATCGATCAATCAAATGGCTCTTTTCCAGTCACAACTAAACAATATCTAGTTTCATAGTAACAACAACTATAAACAATCCAGCAAGTAAATTGAAATAGGCAGAGTAATAGGCAATTTTGATACACACCATGAACAAAAAATTCAGCCACCAATGAAACAGTACAATAGGCTTGATATGGATGCAAAAGCACAAGAGACAAGTTAAAGCTGTGCACCTGAGCATACAACTAGCTTAGGGAGGACTGATCAGACCCTGTCCAAATGCTATCATTTGTCGAAGGAGGCCCTGATGATGAAGTGAGGGCTTCCCGGGCATGCATATCCTCCTAGCAATGAAAGCAAGGTTTCAGTTTTGCATTATTATATAAATAAAGGTTCATTGCATAAGGTACTTAATAAAAGAAGGAAAGAAGATGTAATAGTTCAGTACTTACTATAGCTTTCTTCACAGGTTCACTAAAACCTTTAGTTTGCTGCAATGCAACTCATTGAAGAGATCAATTGCAGTGGGCTCACTGTCAATTGCAGTGCCCATGCTCTTCCCCCTTGGCTCCACTTGTCTACTGCCAATGAGGGTGCCTAACATAAAACATTTACAAGTGTCAATAAAAAGATCCTGCACTTGATATGAAGGCATAACACATGTAAGGACAAAAGAACCAAGAATCCAAGTTACTTGCCTTGTTCAGTAGAGCTCAATCCCATTGGCTCCAGTTCTGTACTTAAAGTGAGGTCGCTCAATCCCATTGCCGCCACCCAATATGGCCACCCAGGGCAAAGGCCCCATCTGCGGCGCAAGAAGGAAGGGTTGAGGATGATGGCCAGCTGCGGCGCGCCCTGGTTAGGGCTCCACCCGCCGATGCTCACCAGTGCCACCGGATCTTGCAGTCCCGAGGCCCTCATTCCTGTAGTCACATTCTGCAAGACAGATGAAGAAAGGATCAGAAGAAAAGATCACAACATTGCATTAGAGTTGCAGAAGCTTCTAACTAGTAACTGTTTTTGCTAGGCAAATCTGTGAGTTGAGTAGGATTTTAAGGAACATATACTCTTTGAGCAAGTTTATGGCCAATTTAGTAAAAATCTCACATCTTATTTACATTCTTAAGGGGATATTTTTGTGACAGACATTATATTGGATTATAGAAGGAATCAAAGAGATGCTAGCCATGACCTTTCTTCTCAGGAGGTGATGCTTCCCTTTTACCAGTGACATTTTCTACTTTATGAACTACAAACTGAGGTGGAGATGCAGCAGTAGCTTCCCTTCCTACTTCAACTACCAACTGCACTAAAGGATCCAAGCTAGAAAAAATTTCTTCCTTGGAGATATCATGATCTATATACTTGGATTGAACTGAGTTCAAATCAATGCTACCACACCTAACATTAACAAAAAAGAAGGTGTTTGTTTTTCAAGAAGAATGCATGTGGTAAGTTTGGTACAGAGTAGAGATCAAAACAGTAAACAGCAGCTGTGATCGGTTGGGCAGGCATAAACATCTTCCTAATTATAATTAGTTAACCATACATTTTTGAAACACGGTTTCTTTCTAGACCAAGTCAACTCTGACCCAAACTAACTCTTTGGATTATTTTAGTTATTAAATGTAGAAAAGCTATATTCAATAGGTAGATGCCTCCCTACTTTCCCAATGAACATTGTTAAACCCACAAGTCAAACATGGATCACCCATATTTTGTTAAAGAAACTATGCAATTTACCACGCTTGACCTAAGAAGCTAGACCAATCCTTGATAATACTAACATGCCTAACCATGCTCCTAATGCTTACCACTCCAAATTCAAGTACGAAAGCTATTCTGTTATGTAACCTAAAAATAATTTCGAACTTGAGAATCATCGATATCGACACTAGAATACAAGAAGAGAGAAGCTTATAAATTTTAAGTACTAATTGTATGACTGTCAAAAACAATCAGAACTATGTACTGCTCTAATTTTCACAAAACAATCAGAACTAATTACTGCTCTAATTTTCACAAAGGAAGGATCAATAGGAGAATGGAAAAAAAATATTTGCTAATCACTACTCCATTTCAAGACTGATTCACACAAAAAACTGTCTACGAGAGAGGTTGTGACCTGCAAAACTGAATCCTCTACTCGCCGTCTTTATCTCGGCTACAAATCGCTCCAGCAGCAGCAGCAATCAAGCACCAACAGAATACCCCAATAAACCACCAGATCCGCGAAAGCCAGCATCTCTTCTACCGATTTCCCAACTCGACAAGGGAGTTGTTACCCTCATCCAGATCCCGACGCGTCGCTGGCCTGCTACCCTGCACCCCTGCCCCGCGCCGCGTGCCCCCGCGGCCCGCGCCACCTGCCCGCCTCGCGATTGCAAGTCGCCAGCCGCCGCTGGTCATTGTCATCGTCGTCGTCGCTGCAGCCACTGTAGCCATCGTTGCAGCCACTGTAGCCGTCGTCGCCACAGCCGCCGCCGCCGTAGCCGCTCGCTCCCTCCTACCTAAGCCTGCCGCCGCCGCTCCGTAGGGCGGAGGTGGGTGGATCTGCGTGTTGCCGGCGCTCCCACTCACGCCAGGCCGCTCCCGAGGACGGAGGCCATTGGATTCATGCGCCGCCGTCGCTCCCGAGGACGGGAGGCGGCGAATCCGTGTGCCACCGTCCTTCCCTGGCTAGGGGAGCGACGTGGGGAAAGGCGAAGATGGATGGAGGAGGAGAGGGATGTTGGCGGT
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| CDS seq | ATGAGGAATGTGACTACAGGAATGAGGGCCTCGGGACTGCAAGATCCGGTGGCACTGGTGAGCATCGGCGGGTGGAGCCCTAACCAGGGCGCGCCGCAGCTGGCCATCATCCTCAACCCTTCCTTCTTGCGCCGCAGATGGGGCCTTTGCCCTGGGTGGCCATATTGGGTGGCGGCAATGGGATTGAGCGACCTCACTTTAAGTACAGAACTGGAGCCAATGGGATTGAGCTCTACTGAACAAGGCAAGTAA |
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| Protein seq | MRNVTTGMRASGLQDPVALVSIGGWSPNQGAPQLAIILNPSFLRRRWGLCPGWPYWVAAMGLSDLTLSTELEPMGLSSTEQGK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0008900 | OsAzu_04g0008900.01 | Chr04 | 14832775 | 14834375 | - | NAM | ||
| CDS seq | ATGAGGAATGTGACTACAGGAATGAGGGCCTCGGGACTGCAAGATCCGGTGGCACTGGTGAGCATCGGCGGGTGGAGCCCTAACCAGGGCGCGCCGCAGCTGGCCATCATCCTCAACCCTTCCTTCTTGCGCCGCAGATGGGGCCTTTGCCCTGGGTGGCCATATTGGGTGGCGGCAATGGGATTGAGCGACCTCACTTTAAGTACAGAACTGGAGCCAATGGGATTGAGCTCTACTGAACAAGGCAAGTAA
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| Protein seq | MRNVTTGMRASGLQDPVALVSIGGWSPNQGAPQLAIILNPSFLRRRWGLCPGWPYWVAAMGLSDLTLSTELEPMGLSSTEQGK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_04g0008900 | OsAzu_04g0008900.02 | Chr04 | 14831324 | 14834823 | - | IsoSeq | ||
| CDS seq | CCGCCAACATCCCTCTCCTCCTCCATCCATCTTCGCCTTTCCCCACGTCGCTCCCCTAGCCAGGGAAGGACGGTGGCACACGGATTCGCCGCCTCCCGTCCTCGGGAGCGACGGCGGCGCATGAATCCAATGGCCTCCGTCCTCGGGAGCGGCCTG |
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| Protein seq | PPTSLSSSIHLRLSPRRSPSQGRTVAHGFAASRPRERRRRMNPMASVLGSGL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 14833020 | 14834370 | - | OsAzu_04g0008900.02 | OsAzu_04g0008900.02,OsAzu_04g0008900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.285608 | 9.558104 | 6.500482 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0361000 | RBH | 11.691644 | 10.265623 | 4.149907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g27800 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0361000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009720 | SBH | 4.296893 | 16.935848 | 20.478062 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009630 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009400 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009240 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0132200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008350 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0256500 | RBH | 0.233779 | 0.0682305 | 0.027465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008340 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008420 | RBH | 0.0 | 0.0 | 0.0 |
