Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0015840 | OGI:01044100 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:14634566-14639001 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggcgcggcggcggcgaGgggtcggaggagagggagagggagagggagtgggaggaggcggcggaggcggtggcgtacgactcctgcacctggccgccgccggtggtggcggtgtgcggccccgggaacagcggcaagtccgccttctcccgcctcctcctcaacaccctcgtggggaggtgagtgagacttgacagtgcccgcgattctactagaatggctctgttttcctgaatttactctgctggacaagtcccccactaaaaactttctaatgaattgatgatcgttcttctgtttgagtgtgtgtgtgtgtgtgtgtgactagacgtgtgaatattagttagtactgctgtctgtggactgtggttggatgatgagcaaatagatagtacaatcaagtactacaatgtggctaatctgtcgacagttttcccctgtttaagcttgttttgatttatgtatgtttgctttggtcagcattggtgttaactatcttctttcacttaattaaaatataaggagtgagaaattttaacaatgttggcttgtaatttacttaatctgatgttaataattagtagtgcaagcactacaattttctgtgactctttttacttattgcggcgttttgcttcattcggaattcagtttgctattacattattcagaatttttttttctttgctataggtataagaaggtggcctacctggatactgatgttggccaaccagagttcacacctcctgggtttgtatcgattcatgtacttgaggaacaggctgaaggtgtcacatttatgttcctttcaatcttccctgagttttcttctcatttctgtgtaactggctaaaaagagtaaatttcacaaaactacatttcacaaaactacagatactatgaccaaattatcacaaaactacatatttaactcgatgtatcacaaaactacacatttaacaccAaatttatcacaaaactacacatttaagatgaagtgtcacaaaactacatatttagtaactaaattatcacaaaactacaggtttagaatcaatttaagcacaaagtaatgatgtttatagctccaccataacaatggtgctagggatttaaactctaaagttgtagttttgtgataaattcaatattgaatatgcatttttatgatacttaatctaaaatatgtagttttgtgataaatttggtgctaaatatgtagttttgtgatacaactccttaaatctgtagttttgtgataaTttggtcaaaatacttgtagttttgtgaaatttactcaaaaagactaaaaattttgttggtttgtgatcattgcagattttaaaatgttgtacctgcggacaccaaagaggtaagcagcagtgttattatcttcagtttttcagtgtgcgatgatgtgtgtggtcttttggcattcctctgcttaactgctttaatgcatatcaatatctgcatgcgataaatttatttcaattattaaaatacttccctgatttcttcatcaaatcattgatttgttgtccaataatccataataagtcatttctgtttctcaaaATatcaaagttaagttaatatagctttctaaagtccagtttggagctaaatacacaaatacgcaagagatgcctgttcagtttgaagtatccacgtagtcaatactttcatacacttgtaatttcaatagtaatAaatataagtctgaacatgatcataataaagctaagtatgaaataggcatcttaagcatcatacttgttcaagttaatatatctctgatttttgtgtactcaattcacttcccaatcatgtttgagaaagtgaaattgattatcttcttggagtggcctaagacattcatgttgcgcatattttaggtgcttctttttcggtgattgctctgcaaagaagAatccaaaacttctcttgagctacatatttagcctttatgattatttcctcaaagaactctatcgctttgaagacaccgataaccctaacaaatcagcaataccacttgttattaacacttctggatgggtgaaaggtgatgtttaatttctccattttattgttcatcccatccaagttattagttattactgttaataacaatggttgatttggctaaatgattgggtcacttttattgaatttgaatgtattgcttatttttgcaaatgtattgattttctactatatttaggtactggcctgcatatgctgactgagatgttgaaatatgcatctccaactcatgttattcggctaagaacatcagtagagggaaaaaatttacctgctgggatgttttggttagatgaacctgaaggagacccggccattaatttagttgaaattcgtgctgcacAacactctcctcgtcagtaagtgtctattgcaatgaaattaataagtttatatttctttcaagtattaatggatatatggcttttgagtgcagtctattagtaaagaaagaggcaaggatcattcgtgatctaaggataattgcatacttcaggcagtgcttacccatggagtttcctgttttctcttacaatgatttaattcaaggctttgcttctattgaaccgtttcagcttcctttgtcaaaacttcaggttattgatctgcacagccaggtgaaatctttggacctatctacattttcaacactactataatcaagAaattttttttagaagaatcatgcgttattcagattatacgatgtagtgatgtttttactaatcctttatttcctatgttcgaaatactacaaattagtatttgccagcaacaaaaataatggcattttgtatatatagatttttagaaagctaatttcacattcagtgcttcacaggaaaatgaaaacaaaatgcatattatagcttattccccgtttacctagtcaagtagtcaatggatgtcattctaaaagttgtaaagttaagtttgtatgagtatttgattccgctatttgtgcaggcagcactgtcagtcacatatatagtcatcaaattgtcatcttgaacaataattttgtatgcaaggactggagtttagcaaaacgaaatatgtcatgtttacaactggttaccaacttatagctcagataagaattgcttatgacatgcttactgtaataatccagtatgctgcgataaagtcgacgctgtttggagtatcgctcctggcagcaattttcttgaggttttgtattaaattactgatgtagggtctaagttttgcttctctgtaggtgtctgattatacagtgcatcacttcttgaaaggtactattgttggcattgcaacaagtgcatctgtacctttgtcaaatcagtgttccacaccttgttgcattggactaggtatgttcagTttaaatattgatttatgattttgatagccttccatttagttcaactgtgttgaaatgaattggtcagatgttgactattttttttgcatgccatttttcttgacttgcaatttaggtttcatcaaagccatagatgtttcacgagattgtattcatttgatcactcctgtttctcgtcagcttttggaaaatgccgatatctttttccgcagtagttttacagtccctacatgtctgttccaggtaatagttaattgagattctgcccactaatgtgatttgttctttctgcaaaccaaagctctagctAaattttccagcggttgaaatgtgagatatatagaaccacatgcatcagtattggtatgattgttataaaaaaacagtgttggttcaatgcaaaaatacatttattcttgtctttgctcattctaccataacgtatagtgcaatacattcatttttttctaccacggtttattgtgaaatttggatgcttaacagtgtcagtggcgcaatatattgcatggccaattatgtaaataattttcacttcattggtcccaagaaaatttgtgaaaaatatatctgggtgctttgggtgcaagaactcactgtgaatcattcacgaagtgcccagcattagttcttctcttacatcgagtacattctagtatgctggtattatcacctagatagtacagtacacattagatgggttgtacggaaaatttgaaattaatgttatttatttatttagtttcatgaatcatatgataccaccagtaaagacgcaattgtcgattgaaattgatcatagtgcacacatgctggccagctgcaatgaactagtgtctatatttgtacagtttgataaattagttacttaatcttgccgTtttgctgctccctcgtattttgcctcttactgtctaactgatacatgtgattgcaggtggtatctgatactgcaagtgatatagcggacaggctaagggagctcaattgtcatggataa
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| CDS seq | atggggcgcggcggcggcgaGgggtcggaggagagggagagggagagggagtgggaggaggcggcggaggcggtggcgtacgactcctgcacctggccgccgccggtggtggcggtgtgcggccccgggaacagcggcaagtccgccttctcccgcctcctcctcaacaccctcgtggggaggtataagaaggtggcctacctggatactgatgttggccaaccagagttcacacctcctgggtgcttctttttcggtgattgctctgcaaagaagAatccaaaacttctcttgagctacatatttagcctttatgattatttcctcaaagaactctatcgctttgaagacaccgataaccctaacaaatcagcaataccacttgttattaacacttctggatgggtgaaaggtactggcctgcatatgctgactgagatgttgaaatatgcatctccaactcatgttattcggctaagaacatcagtagagggaaaaaatttacctgctgggatgttttggttagatgaacctgaaggagacccggccattaatttagttgaaattcgtgctgcacAacactctcctcgtcatctattagtaaagaaagaggcaaggatcattcgtgatctaaggataattgcatacttcaggcagtgcttacccatggagtttcctgttttctcttacaatgatttaattcaaggctttgcttctattgaaccgtttcagcttcctttgtcaaaacttcaggttattgatctgcacagccaggtgtctgattatacagtgcatcacttcttgaaaggtactattgttggcattgcaacaagtgcatctgtacctttgtcaaatcagtgttccacaccttgttgcattggactaggtttcatcaaagccatagatgtttcacgagattgtattcatttgatcactcctgtttctcgtcagcttttggaaaatgccgatatctttttccgcagtagttttacagtccctacatgtctgttccaggtggtatctgatactgcaagtgatatagcggacaggctaagggagctcaattgtcatggataa
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| Protein seq | MGRGGGEGSEEREREREWEEAAEAVAYDSCTWPPPVVAVCGPGNSGKSAFSRLLLNTLVGRYKKVAYLDTDVGQPEFTPPGCFFFGDCSAKKNPKLLLSYIFSLYDYFLKELYRFEDTDNPNKSAIPLVINTSGWVKGTGLHMLTEMLKYASPTHVIRLRTSVEGKNLPAGMFWLDEPEGDPAINLVEIRAAQHSPRHLLVKKEARIIRDLRIIAYFRQCLPMEFPVFSYNDLIQGFASIEPFQLPLSKLQVIDLHSQVSDYTVHHFLKGTIVGIATSASVPLSNQCSTPCCIGLGFIKAIDVSRDCIHLITPVSRQLLENADIFFRSSFTVPTCLFQVVSDTASDIADRLRELNCHG |
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| Function | Polynucleotide 5'-hydroxyl-kinase NOL9 [UniProtKB/Swiss-Prot:Q8VYP6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0015840 | OsLima_01g0015840.01 | Chr01 | 14634566 | 14639001 | + | NAM | ||
| CDS seq | atggggcgcggcggcggcgaGgggtcggaggagagggagagggagagggagtgggaggaggcggcggaggcggtggcgtacgactcctgcacctggccgccgccggtggtggcggtgtgcggccccgggaacagcggcaagtccgccttctcccgcctcctcctcaacaccctcgtggggaggtataagaaggtggcctacctggatactgatgttggccaaccagagttcacacctcctgggtgcttctttttcggtgattgctctgcaaagaagAatccaaaacttctcttgagctacatatttagcctttatgattatttcctcaaagaactctatcgctttgaagacaccgataaccctaacaaatcagcaataccacttgttattaacacttctggatgggtgaaaggtactggcctgcatatgctgactgagatgttgaaatatgcatctccaactcatgttattcggctaagaacatcagtagagggaaaaaatttacctgctgggatgttttggttagatgaacctgaaggagacccggccattaatttagttgaaattcgtgctgcacAacactctcctcgtcatctattagtaaagaaagaggcaaggatcattcgtgatctaaggataattgcatacttcaggcagtgcttacccatggagtttcctgttttctcttacaatgatttaattcaaggctttgcttctattgaaccgtttcagcttcctttgtcaaaacttcaggttattgatctgcacagccaggtgtctgattatacagtgcatcacttcttgaaaggtactattgttggcattgcaacaagtgcatctgtacctttgtcaaatcagtgttccacaccttgttgcattggactaggtttcatcaaagccatagatgtttcacgagattgtattcatttgatcactcctgtttctcgtcagcttttggaaaatgccgatatctttttccgcagtagttttacagtccctacatgtctgttccaggtggtatctgatactgcaagtgatatagcggacaggctaagggagctcaattgtcatggataa
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| Protein seq | MGRGGGEGSEEREREREWEEAAEAVAYDSCTWPPPVVAVCGPGNSGKSAFSRLLLNTLVGRYKKVAYLDTDVGQPEFTPPGCFFFGDCSAKKNPKLLLSYIFSLYDYFLKELYRFEDTDNPNKSAIPLVINTSGWVKGTGLHMLTEMLKYASPTHVIRLRTSVEGKNLPAGMFWLDEPEGDPAINLVEIRAAQHSPRHLLVKKEARIIRDLRIIAYFRQCLPMEFPVFSYNDLIQGFASIEPFQLPLSKLQVIDLHSQVSDYTVHHFLKGTIVGIATSASVPLSNQCSTPCCIGLGFIKAIDVSRDCIHLITPVSRQLLENADIFFRSSFTVPTCLFQVVSDTASDIADRLRELNCHG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0354700 | RBH | 0.775381 | 0.568518 | 1.083954 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25240 | RBH | 0.419645 | 0.142831 | 0.130285 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0354700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016510 | RBH | 0.316853 | 0.0 | 0.998854 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016150 | RBH | 0.000000 | 0.000000 | 0.445538 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016390 | RBH | 0.0 | 0.000000 | 3.889923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015840 | RBH | 0.066215 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015840 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0241600 | RBH | 0.591031 | 1.228484 | 2.259106 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015940 | RBH | 0.0 | 0.294574 | 0.168906 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0236800 | RBH | 0.2305385 | 0.583738 | 2.5638255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015810 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016040 | RBH | 2.181235 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015900 | RBH | 0.000000 | 0.0 | 0.261999 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015710 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016140 | RBH | 0.0 | 0.0 | 0.818410 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015920 | RBH | 0.242853 | 3.305326 | 2.839135 |
