Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0015280 | OGI:01040890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:13710409-13710844 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgccgagctgctcggcgagaacgttgtgctgctgctctgcgtgccggagcttgtcccggcgcttctctggtccagccttcacctcgatcgaccggagcagcacggttatcaccgtggacacgatcaaatcgaacagaaacgggctagttgtcttcctcggcgccggggcggtggccgggttcggctacctggcggcctccatggatgagcatggagtctccaggtgcgcgatgacttcggtgtcgtgcgtagtttcagggcttctggtgtactacgctgtgttcatgctgcgtcagtggccaaggccaccgtctcttgtttggaggaggccgtccaggccagctactcaagttttgggcggatgctctactgctagtagcggctgcgctgctggtaccaacatccctggctgcagtccggcttctgcatga
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| CDS seq | atggccgccgagctgctcggcgagaacgttgtgctgctgctctgcgtgccggagcttgtcccggcgcttctctggtccagccttcacctcgatcgaccggagcagcacgttgtcttcctcggcgccggggcggtggccgggttcggctacctggcggcctccatggatgagcatggagtctccaggtgcgcgatgacttcggtgtcgtgcgtagtttcagggcttctggtgtactacgctgtgttcatgctgcgtcagtggccaaggccaccgtctcttgtttggaggaggccgtccaggccagctactcaagttttgggcggatgctctactgctagtagcggctgcgctgctggtaccaacatccctggctgcagtccggcttctgcatga |
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| Protein seq | MAAELLGENVVLLLCVPELVPALLWSSLHLDRPEQHVVFLGAGAVAGFGYLAASMDEHGVSRCAMTSVSCVVSGLLVYYAVFMLRQWPRPPSLVWRRPSRPATQVLGGCSTASSGCAAGTNIPGCSPASA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0015280 | OsLima_01g0015280.01 | Chr01 | 13710409 | 13710844 | + | NAM | ||
| CDS seq | atggccgccgagctgctcggcgagaacgttgtgctgctgctctgcgtgccggagcttgtcccggcgcttctctggtccagccttcacctcgatcgaccggagcagcacgttgtcttcctcggcgccggggcggtggccgggttcggctacctggcggcctccatggatgagcatggagtctccaggtgcgcgatgacttcggtgtcgtgcgtagtttcagggcttctggtgtactacgctgtgttcatgctgcgtcagtggccaaggccaccgtctcttgtttggaggaggccgtccaggccagctactcaagttttgggcggatgctctactgctagtagcggctgcgctgctggtaccaacatccctggctgcagtccggcttctgcatga
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| Protein seq | MAAELLGENVVLLLCVPELVPALLWSSLHLDRPEQHVVFLGAGAVAGFGYLAASMDEHGVSRCAMTSVSCVVSGLLVYYAVFMLRQWPRPPSLVWRRPSRPATQVLGGCSTASSGCAAGTNIPGCSPASA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0347200 | SBH | 0.118631 | 0.243319 | 3.853573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24430 | SBH | 0.037960 | 0.381483 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0347200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016060 | SBH | 0.137664 | 1.901550 | 0.459572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015860 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015480 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0223900 | RBH | 0.548509 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015460 | SBH | 0.082485 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015560 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015320 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015070 | RBH | 0.228918 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015740 | SBH | 0.154889 | 0.0 | 0.936880 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015510 | SBH | 0.0 | 3.245520 | 1.677222 |
