Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0010770 | OGI:01027380 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:8889561-8890814 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgccgccgccgccgccgccgccatctctgcccccggatctccaccgggtgctctccctgctcccgcgcctcgcctccccgcgccacctcctccaggcccacgcctacctcctcccccgcggcggccaccgccacgcgcgcgtcgcctccgcgctcctcctcgcctccctccgcctcccgctccgcgaccacgcggccgcgctcgtccgccgcgtccacccctccgtgtccctcagggccgccgcgcggctccgcggccggggcgggggagggctcgccgcgcagctgcattccctgctcgtccgcgcgggccacgccgccgacccgcacgcctcggccagcctcgtccaggcgtactgctcctgcgggagcgtcgcctccgcgcggagggtgttcgacgagacggccgcctccgcggacgtcgtttcatggaacgtcatgatcgatggatacgtgaagtccggggacctggcccgtgcgcgcgagctgttcgatgttatgccggggaggaacgtggtgtcgtggacgatggtgatcggggcctacgcgcagatgaagcaaccggaggaggcgatcgaggtgtttcggaggatgcaggtggaggggatcgaaccggatggggtggcgttgctgtcggtgctctcggcgtgtggagatcttggtgtggttgatttgggagagtgggtgcacaggtttgtgctgcgacggggtttatgccaggagataccgctgatgaatgcgatcatcgacatgtacgtcaaatgtgggagtgttaagaaagcgttggaagtgtttgagggcatggagcagaagagtattgtcacttggacaacgatgattgctggatttgcattgcacggccttggtttggaagctgtggagttatttcgccggatggagaaagagaatgtgtcaccaaatgatatcacttttcttgcagtcctatcggtatgtagccatgttggactgactgatttgggccgctggtacttcaaaactatggtgtctcagtacaagattaagccacgagttgagcactacgggtgcatgattgatctacttggccgtgcaggttgtttgatggaagctcgtggtttaattcaggatatgcctttcaaggcaaatgcagcaatatggggagctcttcttgctgctgctcgagttgagaacatggcacgaccaccgatcgagatggcttgcatgattgcagtcacatccgtgctccttttggtttcggccagatttgtctaa
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| CDS seq | atgccgccgccgccgccgccgccgccatctctgcccccggatctccaccgggtgctctccctgctcccgcgcctcgcctccccgcgccacctcctccaggcccacgcctacctcctcccccgcggcggccaccgccacgcgcgcgtcgcctccgcgctcctcctcgcctccctccgcctcccgctccgcgaccacgcggccgcgctcgtccgccgcgtccacccctccgtgtccctcagggccgccgcgcggctccgcggccggggcgggggagggctcgccgcgcagctgcattccctgctcgtccgcgcgggccacgccgccgacccgcacgcctcggccagcctcgtccaggcgtactgctcctgcgggagcgtcgcctccgcgcggagggtgttcgacgagacggccgcctccgcggacgtcgtttcatggaacgtcatgatcgatggatacgtgaagtccggggacctggcccgtgcgcgcgagctgttcgatgttatgccggggaggaacgtggtgtcgtggacgatggtgatcggggcctacgcgcagatgaagcaaccggaggaggcgatcgaggtgtttcggaggatgcaggtggaggggatcgaaccggatggggtggcgttgctgtcggtgctctcggcgtgtggagatcttggtgtggttgatttgggagagtgggtgcacaggtttgtgctgcgacggggtttatgccaggagataccgctgatgaatgcgatcatcgacatgtacgtcaaatgtgggagtgttaagaaagcgttggaagtgtttgagggcatggagcagaagagtattgtcacttggacaacgatgattgctggatttgcattgcacggccttggtttggaagctgtggagttatttcgccggatggagaaagagaatgtgtcaccaaatgatatcacttttcttgcagtcctatcggtatgtagccatgttggactgactgatttgggccgctggtacttcaaaactatggtgtctcagtacaagattaagccacgagttgagcactacgggtgcatgattgatctacttggccgtgcaggttgtttgatggaagctcgtggtttaattcaggatatgcctttcaaggcaaatgcagcaatatggggagctcttcttgctgctgctcgagttgagaacatggcacgaccaccgatcgagatggcttgcatgattgcagtcacatccgtgctccttttggtttcggccagatttgtctaa
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| Protein seq | MPPPPPPPPSLPPDLHRVLSLLPRLASPRHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHPSVSLRAAARLRGRGGGGLAAQLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARVENMARPPIEMACMIAVTSVLLLVSARFV |
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| Function | Pentatricopeptide repeat-containing protein At5g56310 [UniProtKB/Swiss-Prot:Q9FMA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0010770 | OsLima_01g0010770.01 | Chr01 | 8889561 | 8890814 | + | NAM | ||
| CDS seq | atgccgccgccgccgccgccgccgccatctctgcccccggatctccaccgggtgctctccctgctcccgcgcctcgcctccccgcgccacctcctccaggcccacgcctacctcctcccccgcggcggccaccgccacgcgcgcgtcgcctccgcgctcctcctcgcctccctccgcctcccgctccgcgaccacgcggccgcgctcgtccgccgcgtccacccctccgtgtccctcagggccgccgcgcggctccgcggccggggcgggggagggctcgccgcgcagctgcattccctgctcgtccgcgcgggccacgccgccgacccgcacgcctcggccagcctcgtccaggcgtactgctcctgcgggagcgtcgcctccgcgcggagggtgttcgacgagacggccgcctccgcggacgtcgtttcatggaacgtcatgatcgatggatacgtgaagtccggggacctggcccgtgcgcgcgagctgttcgatgttatgccggggaggaacgtggtgtcgtggacgatggtgatcggggcctacgcgcagatgaagcaaccggaggaggcgatcgaggtgtttcggaggatgcaggtggaggggatcgaaccggatggggtggcgttgctgtcggtgctctcggcgtgtggagatcttggtgtggttgatttgggagagtgggtgcacaggtttgtgctgcgacggggtttatgccaggagataccgctgatgaatgcgatcatcgacatgtacgtcaaatgtgggagtgttaagaaagcgttggaagtgtttgagggcatggagcagaagagtattgtcacttggacaacgatgattgctggatttgcattgcacggccttggtttggaagctgtggagttatttcgccggatggagaaagagaatgtgtcaccaaatgatatcacttttcttgcagtcctatcggtatgtagccatgttggactgactgatttgggccgctggtacttcaaaactatggtgtctcagtacaagattaagccacgagttgagcactacgggtgcatgattgatctacttggccgtgcaggttgtttgatggaagctcgtggtttaattcaggatatgcctttcaaggcaaatgcagcaatatggggagctcttcttgctgctgctcgagttgagaacatggcacgaccaccgatcgagatggcttgcatgattgcagtcacatccgtgctccttttggtttcggccagatttgtctaa
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| Protein seq | MPPPPPPPPSLPPDLHRVLSLLPRLASPRHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHPSVSLRAAARLRGRGGGGLAAQLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARVENMARPPIEMACMIAVTSVLLLVSARFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0260000 | SBH | 0.425412 | 0.0 | 0.521605 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15530 | SBH | 0.159763 | 0.0 | 0.074566 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0260000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011220 | SBH | 0.180847 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010870 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011230 | SBH | 0.176594 | 6.941864 | 0.948565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010730 | SBH | 0.037496 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010780 | SBH | 0.948080 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0145800 | SBH | 0.7937685 | 3.5884925 | 0.491621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010780 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0144400 | SBH | 0.6684385 | 1.9453465 | 2.3093475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010780 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010810 | SBH | 0.0 | 1.826037 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010740 | SBH | 0.0 | 1.848892 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010890 | SBH | 0.204892 | 0.728427 | 0.708902 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010750 | SBH | 0.521408 | 0.0 | 0.523276 |
