Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0009500 | OGI:01020000 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:7787474-7790800 | ||||||||
| Gene Symbol | GELP2, OsGELP2, OsGELP2a, OsGELP2b | ||||||||||
| DNA seq | ggcaacattagtggaaatgtattgaattttggagtaaaaatacattggcagtgctcgaaaatgcatacatgagtaatcatgtaatgagattcaaaccaccagtggctcccatatttccattccatttccctagaccctagcattattttccagagtatcccctgccatatataacaacatatactgtgatacagtagtattaatttattacgaacatgaaaatagcccagctcagtgcagaatagctgggctacagtatggcccgctgagccatccatccgcgatcgaacggtaggcagcctcggtgaggtgaatgccatcccagaccaagtaattctccgggtctccacaggcacttgcccctgacatgccacacctcgccttgttattgtagttgtaggagccttgcccaccggcgccgcagcacactttcaggccatattgtagccctgcaaaaacattacaaaccatacataatatcagtacattactagtccttaataatgtggctacagtgttcaggcaggtactgaacgttagaatgcaagttctttttgctatcatggtacagagagatacatatctggccaatcaatctgaacatttgcctggcaattaagaaggccatgtgttgcattatgtgcaaatgtccgtgtcaattgtgtcatgttcaggtacacgcagctagtgcgtaatgagtgtgtttgttattccggatttccggttagttgggctagacctttcagacgaacaatgtgcccactgcaagtgttcttataccgggaggatcactggatctgtaccccatctcgtggcctgaacctgatcacccaggatgccatccaaacctgatcacgtcatggctgagagcctgagacgcttgcagcctcgctgagcccagctgcatttgtcttatacaggagagtgatgtgtgctactattacactggtgttgtgtctgctatgtttgagaggagaggaggtgaaaaggagaaaattgagaaaatgtgtacattgagttgagccattagcgcatcatcaataattaagtataaattatttttagcttgaaaaataaatcaatatatatttttaaagtaacttctatgtagataagttctttttcaaaaacaacattttaacctttcgagaaacgtgggtgtgAaaaaagagaaaaaggacaatacgccactccattcattgggtttagacgaaatgacacccactataatgcaaaggttaaaatgccactcaatagattaccttcaaaatattttgccactttaagggattttaatactaaaatacccttggctgtggagaaagaggaagaaagaagagagcagcgccagagaaggtcaagctgggcggcatccgtggctccgtgctcaccgtcggcgggtggtgagtgcgcaagggcgggcgacgacaggggaggaggacggcggtgccgcacgcccatgtgcgggcggcgccggaggcggcaagctgcgagcgcgcgaagccatcccgatagcgccgccgtcctcctccaccaatcaccgccgtccccctccctcccgtcagcgccgccgtcctccgtcattggtaagcagagccgttccctttcttcctctctcttcacaggcaaagggtattttggtcttaaaattttctaaagtggcaaaatatcctgaaggtaacatattgagtggtattttatcatttgcattttagtggatggcatttcatctaaacccaacgaatggagtggcatattgtcattttctctcaaaatctactgctgccgaacgcagccggtggcgtcacaagtagtgcgtgtcaatctactcgcaggagcggtgctcatagtcatcaatttcacattttggatcattcagtgctagctatcttagccgcctgtcctgaacgattcaaagtttcaggcttttcgctaattaatcgactgttagtttcaccctgatactgctttgatcgtttgcaatgccaagtttatagagctaattaattaaaaggggaaataacttttcatgaatctgaagttctgacgtaccgaaactcccgggagactgaaccatctgggtgacctggtcgtagaagttgccgtacatgaggcggacggccgggtacttggcctggacgccggcgagcccctgcttgagcaggccgttgtggtagacggagagggagttgtagctcttgaggcagccattgccgtcgtagtcgtcggagttggagctctggtacagcgtcaggtacagcgggaagcacccgatcggcatcacccccggcaccacgatgtccaccgctcccagcccgatcagcgtctgcatcaacaacagtagtgattgatgtattgattgcttagaaatctgtagaaaatcttgttgccaatttcgatcgatcggcgatggttttgtacctctacgccgcttgtgatcttggcgatgatctgaggcacgtagcctttcacctcgtccatgctcttgccgccgaagagaggggcgttgtagtcgttgcccccgaactcgcccacgatgaacagagacttgctcaggtagctcttgcaatctgcgattgttcaggaagaacaaaatccctctcaaaaaaaccaaaaaatgaaaacagaaatgatttgatttgagcattgatttaccgttgccgcagatggagggcaagagctgctggaaccactggatttgggtgtcgagagggccgttgttccagatgctgttgcccaacccgagcgactggaagaagtcgaagttcatggtggtggcgccgatgatggccatgttcgcgcccttcttgaagtcgccgccgctcgccttcgacggcgggagcagcggcaatccgaagcgatcagctgcgcgcgcgaacaaattaagctcatcatcttttaatttgcagtgaaaattctgtgcagaatcgatccgaggtgaaaatgcgtcgtgcgtgcctaggaagtcgatgatgacgcggccgttggtgcagcggccggtggggcGgccgaagaaggtgttgccgtagggaggctggccggtggtgagccacgacgggcagccgccggtgcagaggttgccggtgtcggtgatggagtcaccgaagttgtatatcgcgttgtagctctgcgacgacgctcgccgggcgacgacggcgaggaggaggaggacggcggcgacgacgacgacggccttgttggccgccatggctgagcacgtaagtgagtacgttgcgtgcgtgacagagagatgcgcgcgcgcacgtgacacgtctgtaaccttgtgccttgctccttggaggtgtgaataggctcggttgcacacag
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| CDS seq | atggcggccaacaaggccgtcgtcgtcgtcgccgccgtcctcctcctcctcgccgtcgtcgcccggcgagcgtcgtcgcagagctacaacgcgatatacaacttcggtgactccatcaccgacaccggcaacctctgcaccggcggctgcccgtcgtggctcaccaccggccagcctccctacggcaacaccttcttcggcCgccccaccggccgctgcaccaacggccgcgtcatcatcgacttcctagctgatcgcttcggattgccgctgctcccgccgtcgaaggcgagcggcggcgacttcaagaagggcgcgaacatggccatcatcggcgccaccaccatgaacttcgacttcttccagtcgctcgggttgggcaacagcatctggaacaacggccctctcgacacccaaatccagtggttccagcagctcttgccctccatctgcggcaacgattgcaagagctacctgagcaagtctctgttcatcgtgggcgagttcgggggcaacgactacaacgcccctctcttcggcggcaagagcatggacgaggtgaaaggctacgtgcctcagatcatcgccaagatcacaagcggcgtagagacgctgatcgggctgggagcggtggacatcgtggtgccgggggtgatgccgatcgggtgcttcccgctgtacctgacgctgtaccagagctccaactccgacgactacgacggcaatggctgcctcaagagctacaactccctctccgtctaccacaacggcctgctcaagcaggggctcgccggcgtccaggccaagtacccggccgtccgcctcatgtacggcaacttctacgaccaggtcacccagatggttcagtctcccgggagtttcgggctacaatatggcctgaaagtgtgctgcggcgccggtgggcaaggctcctacaactacaataacaaggcgaggtgtggcatgtcaggggcaagtgcctgtggagacccggagaattacttggtctgggatggcattcacctcaccgaggctgcctaccgttcgatcgcggatggatggctcagcgggccatactgtagcccagctattctgcactga
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| Protein seq | MAANKAVVVVAAVLLLLAVVARRASSQSYNAIYNFGDSITDTGNLCTGGCPSWLTTGQPPYGNTFFGRPTGRCTNGRVIIDFLADRFGLPLLPPSKASGGDFKKGANMAIIGATTMNFDFFQSLGLGNSIWNNGPLDTQIQWFQQLLPSICGNDCKSYLSKSLFIVGEFGGNDYNAPLFGGKSMDEVKGYVPQIIAKITSGVETLIGLGAVDIVVPGVMPIGCFPLYLTLYQSSNSDDYDGNGCLKSYNSLSVYHNGLLKQGLAGVQAKYPAVRLMYGNFYDQVTQMVQSPGSFGLQYGLKVCCGAGGQGSYNYNNKARCGMSGASACGDPENYLVWDGIHLTEAAYRSIADGWLSGPYCSPAILH |
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| Function | GDSL esterase/lipase At5g45910 [UniProtKB/Swiss-Prot:Q9FJ45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0009500 | OsLima_01g0009500.01 | Chr01 | 7787474 | 7790800 | - | NAM | ||
| CDS seq | atggcggccaacaaggccgtcgtcgtcgtcgccgccgtcctcctcctcctcgccgtcgtcgcccggcgagcgtcgtcgcagagctacaacgcgatatacaacttcggtgactccatcaccgacaccggcaacctctgcaccggcggctgcccgtcgtggctcaccaccggccagcctccctacggcaacaccttcttcggcCgccccaccggccgctgcaccaacggccgcgtcatcatcgacttcctagctgatcgcttcggattgccgctgctcccgccgtcgaaggcgagcggcggcgacttcaagaagggcgcgaacatggccatcatcggcgccaccaccatgaacttcgacttcttccagtcgctcgggttgggcaacagcatctggaacaacggccctctcgacacccaaatccagtggttccagcagctcttgccctccatctgcggcaacgattgcaagagctacctgagcaagtctctgttcatcgtgggcgagttcgggggcaacgactacaacgcccctctcttcggcggcaagagcatggacgaggtgaaaggctacgtgcctcagatcatcgccaagatcacaagcggcgtagagacgctgatcgggctgggagcggtggacatcgtggtgccgggggtgatgccgatcgggtgcttcccgctgtacctgacgctgtaccagagctccaactccgacgactacgacggcaatggctgcctcaagagctacaactccctctccgtctaccacaacggcctgctcaagcaggggctcgccggcgtccaggccaagtacccggccgtccgcctcatgtacggcaacttctacgaccaggtcacccagatggttcagtctcccgggagtttcgggctacaatatggcctgaaagtgtgctgcggcgccggtgggcaaggctcctacaactacaataacaaggcgaggtgtggcatgtcaggggcaagtgcctgtggagacccggagaattacttggtctgggatggcattcacctcaccgaggctgcctaccgttcgatcgcggatggatggctcagcgggccatactgtagcccagctattctgcactga
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| Protein seq | MAANKAVVVVAAVLLLLAVVARRASSQSYNAIYNFGDSITDTGNLCTGGCPSWLTTGQPPYGNTFFGRPTGRCTNGRVIIDFLADRFGLPLLPPSKASGGDFKKGANMAIIGATTMNFDFFQSLGLGNSIWNNGPLDTQIQWFQQLLPSICGNDCKSYLSKSLFIVGEFGGNDYNAPLFGGKSMDEVKGYVPQIIAKITSGVETLIGLGAVDIVVPGVMPIGCFPLYLTLYQSSNSDDYDGNGCLKSYNSLSVYHNGLLKQGLAGVQAKYPAVRLMYGNFYDQVTQMVQSPGSFGLQYGLKVCCGAGGQGSYNYNNKARCGMSGASACGDPENYLVWDGIHLTEAAYRSIADGWLSGPYCSPAILH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.228378 | 0.083741 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0214600 | RBH | 0.513003 | 1.237048 | 4.023396 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11620 | RBH | 0.309658 | 0.738589 | 0.948743 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0214600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008360 | SBH | 0.0 | 2.965958 | 0.117091 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007970 | SBH | 0.0 | 0.0 | 1.533484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008290 | RBH | 0.0 | 42.438572 | 9.212165 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007920 | SBH | 0.0 | 0.667822 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008000 | SBH | 0.0 | 5.298227 | 2.600528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0101800 | RBH | 17.6583585 | 0.471487 | 0.043331 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007970 | SBH | 0.0 | 0.438153 | 0.046880 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0102800 | RBH | 10.223953 | 0.1257855 | 0.1062585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011020 | SBH | 0.437600 | 0.623303 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008000 | SBH | 0.0 | 5.738152 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007920 | RBH | 11.177053 | 102.290237 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008010 | SBH | 0.0 | 0.702329 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007890 | SBH | 0.0 | 3.279213 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007910 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007870 | SBH | 0.0 | 6.473094 | 0.832347 |
