Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003460 | OGI:01009030 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2784649-2785349 | ||||||||
| Gene Symbol | OsFbox002, OsFbox2, H2B.7 | ||||||||||
| DNA seq | taatcaatgatagcacaagataaagcacctatccgcatggtataaaagcatggttacttatgcccgattcgtgaagcaagtgtttcccaaaagcaacccaaagccattcttcttacagccaatgactaccaaaccaacaatttaacatccatttccaatcttggatgtcacttaaacaatataccacataaacatataaaaactactattactactaggactagatgcagccgtacagcctaggaggaagtgaacttggtgacggccttggtgccctcggagacggcatgcttggcgagctcgctggggaggacgaggcggacggcggtctggatctcgcGGGAtgtgatggtgggtttcttgttgtagcggacgagcttggcggactctccggcgagcttctcgaagatatcgttgatgaaggagttcatgatcgacatggccttgGAggagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaagtttccacgctcttctttgctttcttccgccccgccttcttcccctcgccgctgcccttcttgcccttgccggcaggaagccgcttctccgccttgggcttcttccccgccggggccttctcggccttctccgccgcgggctcctcctccgcgggcttcttcgcggccggcttcttctccgccttgggcgccat
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| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcggcttcctgccggcaagggcaagaagggcagcggcgaggggaagaaggcggggcggaagaaagcaaagaagagcgtggaaacttacaagatctacatcttcaaggtgctgaagcaggtccaccccgacatcggcatctccTCcaaggccatgtcgatcatgaactccttcatcaacgatatcttcgagaagctcgccggagagtccgccaagctcgtccgctacaacaagaaacccaccatcacaTCCCgcgagatccagaccgccgtccgcctcgtcctccccagcgagctcgccaagcatgccgtctccgagggcaccaaggccgtcaccaagttcacttcctcctag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGKKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLVRYNKKPTITSREIQTAVRLVLPSELAKHAVSEGTKAVTKFTSS |
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| Function | Histone H2B.8 [UniProtKB/Swiss-Prot:Q9LGH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003460 | OsLima_01g0003460.01 | Chr01 | 2784649 | 2785349 | - | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcggcttcctgccggcaagggcaagaagggcagcggcgaggggaagaaggcggggcggaagaaagcaaagaagagcgtggaaacttacaagatctacatcttcaaggtgctgaagcaggtccaccccgacatcggcatctccTCcaaggccatgtcgatcatgaactccttcatcaacgatatcttcgagaagctcgccggagagtccgccaagctcgtccgctacaacaagaaacccaccatcacaTCCCgcgagatccagaccgccgtccgcctcgtcctccccagcgagctcgccaagcatgccgtctccgagggcaccaaggccgtcaccaagttcacttcctcctag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGKKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLVRYNKKPTITSREIQTAVRLVLPSELAKHAVSEGTKAVTKFTSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152700 | SBH | 3.008489 | 5.892233 | 16.689157 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05630 | SBH | 2.710991 | 2.539652 | 1.498682 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003860 | RBH | 0.021836 | 1.871711 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003630 | SBH | 0.646581 | 20.911663 | 8.912502 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003850 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003480 | SBH | 0.836611 | 1.633478 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003700 | SBH | 18.897991 | 74.123978 | 38.519333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0048600 | SBH | 31.9919235 | 53.900778 | 30.7694445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003650 | SBH | 1.348011 | 5.121269 | 3.676212 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0049800 | SBH | 33.8744125 | 36.403406 | 76.244484 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003520 | SBH | 1.142210 | 1.500781 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003580 | RBH | 0.0 | 2.040641 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003720 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003700 | SBH | 1.940756 | 3.195471 | 1.455575 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003630 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | SBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003590 | SBH | 9.615303 | 94.344337 | 20.701969 |
