Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003430 | OGI:01008970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2774669-2775187 | ||||||||
| Gene Symbol | RLCK24, OsRLCK24 | ||||||||||
| DNA seq | atggaacagcagcagcgccagcttctgcaactgggagggcgtcacctgcagtcgccggaggccgacgcgggtggcgtcgctgaacctgccatccagcaatctcgccggcacgctctccccagccatcgggaacctcaccttcctgcgaaggctgaacctgagctccaacggcctctgcggcgagatccccaccagcattggtcgcctccgacgcctgcaaatctgcaatggctcaacctgaactataactcctctggtgcgttccctgccaacctcacctcctgcatcagtctgAaaatcctggacctcgactataaccagctgggcggccgcatcccggtggagctgggcaacacattgacacagcttcagatgcttctactgaccaacaatagcatcatcggaccgatcccgccctcgctagccaatatatcatcgctccagtacctatacttggactacaaccacctggagggcctgatcccaccatgcctcaggcaacttcccagttctgcatga
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| CDS seq | atggaacagcagcagcgccagcttctgcaactgggagggcgtcacctgcagtcgccggaggccgacgcgggtggcgtcgctgaacctgccatccagcaatctcgccggcacgctctccccagccatcgggaacctcaccttcctgcgaaggctgaacctgagctccaacggcctctgcggcgagatccccaccagcattggtcgcctccgacgcctgcaaatctgcaatggctcaacctgaactataactcctctggtgcgttccctgccaacctcacctcctgcatcagtctgAaaatcctggacctcgactataaccagctgggcggccgcatcccggtggagctgggcaacacattgacacagcttcagatgcttctactgaccaacaatagcatcatcggaccgatcccgccctcgctagccaatatatcatcgctccagtacctatacttggactacaaccacctggagggcctgatcccaccatgcctcaggcaacttcccagttctgcatga
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| Protein seq | MEQQQRQLLQLGGRHLQSPEADAGGVAEPAIQQSRRHALPSHREPHLPAKAEPELQRPLRRDPHQHWSPPTPANLQWLNLNYNSSGAFPANLTSCISLKILDLDYNQLGGRIPVELGNTLTQLQMLLLTNNSIIGPIPPSLANISSLQYLYLDYNHLEGLIPPCLRQLPSSA |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 [UniProtKB/Swiss-Prot:C0LGE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003430 | OsLima_01g0003430.01 | Chr01 | 2774669 | 2775187 | + | NAM | ||
| CDS seq | atggaacagcagcagcgccagcttctgcaactgggagggcgtcacctgcagtcgccggaggccgacgcgggtggcgtcgctgaacctgccatccagcaatctcgccggcacgctctccccagccatcgggaacctcaccttcctgcgaaggctgaacctgagctccaacggcctctgcggcgagatccccaccagcattggtcgcctccgacgcctgcaaatctgcaatggctcaacctgaactataactcctctggtgcgttccctgccaacctcacctcctgcatcagtctgAaaatcctggacctcgactataaccagctgggcggccgcatcccggtggagctgggcaacacattgacacagcttcagatgcttctactgaccaacaatagcatcatcggaccgatcccgccctcgctagccaatatatcatcgctccagtacctatacttggactacaaccacctggagggcctgatcccaccatgcctcaggcaacttcccagttctgcatga
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| Protein seq | MEQQQRQLLQLGGRHLQSPEADAGGVAEPAIQQSRRHALPSHREPHLPAKAEPELQRPLRRDPHQHWSPPTPANLQWLNLNYNSSGAFPANLTSCISLKILDLDYNQLGGRIPVELGNTLTQLQMLLLTNNSIIGPIPPSLANISSLQYLYLDYNHLEGLIPPCLRQLPSSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.138481 | 0.134116 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152600 | SBH | 0.387161 | 0.291391 | 0.608475 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05940 | SBH | 0.209138 | 0.208471 | 0.124440 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003820 | RBH | 0.000000 | 0.0 | 2.326617 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003590 | SBH | 0.000000 | 0.161752 | 0.352982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003820 | RBH | 0.0 | 4.295686 | 2.986532 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003470 | SBH | 0.035706 | 0.015925 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003660 | RBH | 1.253610 | 2.609523 | 3.362861 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0048500 | SBH | 0.746265 | 3.0119785 | 4.800224 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003640 | SBH | 0.000000 | 0.061787 | 0.371750 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0049700 | SBH | 0.6876345 | 3.118257 | 3.330858 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003200 | SBH | 0.027065 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003550 | RBH | 0.351446 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003690 | RBH | 6.973798 | 12.166174 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003690 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003600 | RBH | 0.0 | 2.008281 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003730 | SBH | 0.104070 | 0.425282 | 0.397443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003580 | SBH | 0.122708 | 2.686569 | 0.302200 |
