Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003260 | OGI:02047340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2675334-2677530 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacgttaaaaccaaacccatctcctcgacgtcttcctcctccatctcgcagctctgcaatggcagcggatggttcagtgctccggaggctctacttctctgtctacaactgggttgtcttcatcggatggtcacttctagcatctttgtctgctggtatttcttggattggacactcagggtgttgttctgatcagggttctttggttttggatcatgcagggctcaggtgttattgtccatgatcttggcgttgttggatgacgggcatgaggccgtctatgctgctatcgagcggcatctgctgtttgcacagactgctgccatcatggaggtctggttttcctcacttttagctttattatcattgcaaaactgtgaatgcagctctgcaatttatttatttcattccacatggagattgagaggtgctaaacttttttgtgttttgctgcttggctggtgatggtattgctggtagtgcagattcttcattccattctaggtacgaagtccccccccccccccccttttttctttgtaaaaaaaaaagagaagaagtcattttcttcttcctaatatgttctttttgttatccttgtcaactgtgaattgtagttacctgctaggtatggctgtcttgttcaaactttatgttaacagactttctggctaacccttaatctggaatgtagaaaatactaatgtagttcctgttagattgaactatttcctacaacaatattgcttatcactgtattatgaattgttgaaaaggattggtgaggtctccagtgtcttctactcttccacaaattactggaaggttgttcattacttggggcatcttgtggagctttcctgaggtaatatcagaccttactcaagttatttgatagtttttgtcttgaaaataagttttggattaggaaacacttgctaaaatgaaaaaaaaaagtatgttaggtaatgtttctgctattagaactaattttatactttcatttatgatcataatgactctgagtaagcactggacaaacctaagttgcagaaattgcacgagtaattgatgccattacatcgtgaaggataagatagttctcttccgttctgcaccccaagttttctattttctgtatttaaacttctaatcaagtaaccattgtttgtagacaatattggtgagttactgtgtgcatttgttttgcagacgcattctcatattcttgttacccccttgatcataagctggtccatcaccgaggtatgtgttgcccccaaaactagtcaccaaattactcgcttggtagaccatgaatttcagatgcaattttattataagatgataaacaacaattcttcTttttgaaatgacagtagttaaacaacaactctgcttcttgaaatgacggtagttattgaagttgttgccttagtcgaacatagattatgattttttttcttcatttcagagcataacttcgtggaaaatttactataattccttgcaggtcatcagatattccttctttggcataaaggaatcatttggatttacaccttcctggctcttatggcttaggttggttctagttgtaaacatatcacaATatgtattagcataagcttcgaaaaattgctcattatcttattagtaaattatcttAaaaaaaattgcttcactgttttcatactgatttcttcgcaggtacagcacctttatagtatgctatcctgttggtatggttagtgaggttggcctaatctatattgccttccctttcatgaaggtaacctgaataacttagaaaggaagaactctacctccatttgataagtgacaacaatcttgtttaaatgctcttttgttttggatgatcaatgtcaggcatctgagaaatactgcattgggatgcccaacaaatggaatttctccttcgactacttctatttctctacttttttgatggctttgtacgttccaggtagtattccatgcaattgtacttcatttattaattgatgctacgatcatgtactaggtttttttcaataggattttctgaaaggaaactaagtaagatttgatggcatactaccttgtttcatttcatgaatgcagtatttccatacttgttgcgccatatggttgcccagcggaagaaagccttgtcaaaggcAaaaaccacataa
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| CDS seq | atgacgttaaaaccaaacccatctcctcgacgtcttcctcctccatctcgcagctctgcaatggcagcggatggttcagtgctccggaggctctacttctctgtctacaactgggttgtcttcatcggatggtcacttctagcatctttgtctgctggtatttcttggattggacactcaggggctcaggtgttattgtccatgatcttggcgttgttggatgacgggcatgaggccgtctatgctgctatcgagcggcatctgctgtttgcacagactgctgccatcatggagacgcattctcatattcttgttacccccttgatcataagctggtccatcaccgaggtcatcagatattccttctttggcataaaggaatcatttggatttacaccttcctggctcttatggcttaggtacagcacctttatagtatgctatcctgttggtatggttagtgaggttggcctaatctatattgccttccctttcatgaaggcatctgagaaatactgcattgggatgcccaacaaatggaatttctccttcgactacttctatttctctacttttttgatggctttgtacgttccagtatttccatacttgttgcgccatatggttgcccagcggaagaaagccttgtcaaaggcAaaaaccacataa
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| Protein seq | MTLKPNPSPRRLPPPSRSSAMAADGSVLRRLYFSVYNWVVFIGWSLLASLSAGISWIGHSGAQVLLSMILALLDDGHEAVYAAIERHLLFAQTAAIMETHSHILVTPLIISWSITEVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMKASEKYCIGMPNKWNFSFDYFYFSTFLMALYVPVFPYLLRHMVAQRKKALSKAKTT |
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| Function | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [UniProtKB/Swiss-Prot:Q7XSZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003260 | OsLima_01g0003260.01 | Chr01 | 2675334 | 2677530 | + | NAM | ||
| CDS seq | atgacgttaaaaccaaacccatctcctcgacgtcttcctcctccatctcgcagctctgcaatggcagcggatggttcagtgctccggaggctctacttctctgtctacaactgggttgtcttcatcggatggtcacttctagcatctttgtctgctggtatttcttggattggacactcaggggctcaggtgttattgtccatgatcttggcgttgttggatgacgggcatgaggccgtctatgctgctatcgagcggcatctgctgtttgcacagactgctgccatcatggagacgcattctcatattcttgttacccccttgatcataagctggtccatcaccgaggtcatcagatattccttctttggcataaaggaatcatttggatttacaccttcctggctcttatggcttaggtacagcacctttatagtatgctatcctgttggtatggttagtgaggttggcctaatctatattgccttccctttcatgaaggcatctgagaaatactgcattgggatgcccaacaaatggaatttctccttcgactacttctatttctctacttttttgatggctttgtacgttccagtatttccatacttgttgcgccatatggttgcccagcggaagaaagccttgtcaaaggcAaaaaccacataa
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| Protein seq | MTLKPNPSPRRLPPPSRSSAMAADGSVLRRLYFSVYNWVVFIGWSLLASLSAGISWIGHSGAQVLLSMILALLDDGHEAVYAAIERHLLFAQTAAIMETHSHILVTPLIISWSITEVIRYSFFGIKESFGFTPSWLLWLRYSTFIVCYPVGMVSEVGLIYIAFPFMKASEKYCIGMPNKWNFSFDYFYFSTFLMALYVPVFPYLLRHMVAQRKKALSKAKTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150800 | SBH | 0.248134 | 0.0 | 1.052662 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05710 | RBH | 0.000000 | 0.000000 | 0.512656 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003640 | SBH | 0.330210 | 9.723033 | 0.408640 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003480 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003620 | RBH | 0.0 | 0.000000 | 1.157980 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003300 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003520 | SBH | 1.900995 | 42.083565 | 16.390316 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046700 | SBH | 9.59436 | 7.9674395 | 9.0453085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003440 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0048500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003290 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003360 | SBH | 0.358513 | 19.633137 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003500 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003540 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003410 | RBH | 0.176690 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003590 | RBH | 0.159704 | 15.418100 | 3.234962 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003440 | RBH | 1.011356 | 78.888649 | 9.556228 |
