Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0000110 | OGI:01000180 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:69175-70819 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACATGTAGTAGTAGTAGTAGTAGTAGTAATTTCATCTGATATTACTCATCCATTCCATCCGCGACAGGGAGCGTAGCATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATAGTAAGTAAGCTGCTTCGATCTTACTAATTTGTTGAGCATTATTATCTTAATTTGTTGATTGATGGATGGATGGATGGATGGTGGTGCAGCAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGTGGGTGCCTACCTTAGCTGGTAGTAAGGCTTACCATCCATCACCAACAAAACAAACAATTCACCATGCATGCATGCACCCATGCTGCAGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGTCAGCCTCACTCCACTCTCACTCAGCAAATTTGCCGTCCCCTCCGCCGCTGCGCTGCACATTAACATCACTCCTAGTAGTACTTCAGTAACACCTCTATTAATCACAAGTATATTTTTTTCTTCCGCCGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGAACCTAGCCAGAAATGTCTTGTACTATACAATCTGATCCGAACAATATTCTACCGTACGCTAGCAGCACAGTTAGCAAATGGTTTGGTTAGGTTTAAGGCAAGACAATCTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTCCATCCAAACCTGGAACAACAATTTCAGATGCATATACTACTACTTTACATTTGTTCCTTTTCCTGCATAAAGACCGTCCATGTCTTACTGAATCCAGTAAAATTAGCACATGTATCCTCCTTGTCTGATCTGATGACGAATCATTAATTCCCTCCCAT
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| CDS seq | ATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATACAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGTGGGTGCCTACCTTAGCTGGTAGTAAGGCTTACCATCCATCACCAACAAAACAAACAATTCACCATGCATGCATGCACCCATGCTGCAGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGTCAGCCTCACTCCACTCTCACTCAGCAAATTTGCCGTCCCCTCCGCCGCTGCGCTGCACATTAA
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| Protein seq | MQVQMQMQQATTVLSSSSNRPWTLWCHPVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAIQRVVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGVDGAVAVPPDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRIWRRGFDSGELRSEVYDDAADALRRWRAKAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGWVPTLAGSKAYHPSPTKQTIHHACMHPCCRAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGQPHSTLTQQICRPLRRCAAH |
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| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:Q2R483] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0000110 | OsLima_01g0000110.01 | Chr01 | 69175 | 70819 | + | NAM | ||
| CDS seq | ATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATACAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGTGGGTGCCTACCTTAGCTGGTAGTAAGGCTTACCATCCATCACCAACAAAACAAACAATTCACCATGCATGCATGCACCCATGCTGCAGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGTCAGCCTCACTCCACTCTCACTCAGCAAATTTGCCGTCCCCTCCGCCGCTGCGCTGCACATTAA
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| Protein seq | MQVQMQMQQATTVLSSSSNRPWTLWCHPVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAIQRVVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGVDGAVAVPPDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRIWRRGFDSGELRSEVYDDAADALRRWRAKAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGWVPTLAGSKAYHPSPTKQTIHHACMHPCCRAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGQPHSTLTQQICRPLRRCAAH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0000110 | OsLima_01g0000110.02 | Chr01 | 69175 | 70819 | + | NAM | ||
| CDS seq | ATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATACAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGA
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| Protein seq | MQVQMQMQQATTVLSSSSNRPWTLWCHPVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAIQRVVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGVDGAVAVPPDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRIWRRGFDSGELRSEVYDDAADALRRWRAKAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGLEVIISVRPGNAPLPDNHGFHTITSFAEISI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.852625 | 0.156181 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0101200 | RBH | 2.255448 | 2.956198 | 2.913589 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g01120 | RBH | 2.612332 | 3.478844 | 0.818210 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0101200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0000110 | RBH | 0.476410 | 3.272695 | 1.182238 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000110 | RBH | 2.586427 | 0.000000 | 2.123926 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000110 | RBH | 1.701038 | 0.997130 | 1.130021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0000110 | RBH | 0.432424 | 0.068895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000110 | RBH | 34.572571 | 1.248855 | 3.801920 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0001000 | RBH | 47.7205485 | 2.997649 | 1.576491 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000110 | RBH | 1.407673 | 0.179818 | 0.359784 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0001500 | RBH | 10.5784065 | 1.111239 | 2.5316235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000110 | RBH | 3.963054 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000110 | RBH | 23.976044 | 7.477658 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000100 | RBH | 2.630224 | 0.000000 | 0.732732 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000110 | RBH | 1.482029 | 0.868022 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000120 | RBH | 0.610334 | 0.000000 | 0.454878 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000110 | RBH | 2.146088 | 3.533438 | 0.732450 |
