Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_01g0000110 OGI:01000180 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr01:61115-64628
Gene Symbol -
DNA seq

GTGACATGTAGTAGTAGTAGTAGTAGTAGTAATTTCATCTGATATTACTCATCCATTCCATCCGCGACAGGGAGCGTAGCATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATAGTAAGTAAGCTGCTTCGATCTTACTAATTTGTTGAGCATTATTATCTTAATTTGTTGATTGATGGATGGATGGATGGATGGTGGTGCAGCAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGTGGGTGCCTACCTTAGCTGGTAGTAAGGCTTACCATCCATCACCAACAAAACAAACAATTCACCATGCATGCATGCACCCATGCTGCAGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGTCAGCCTCACTCCACTCTCACTCAGCAAATTTGCCGTCCCCTCCGCCGCTGCGCTGCACATTAACATCACTCCTAGTAGTACTTCAGTAACACCTCTATTAATCACAAGTATATTTTTTTCTTCCGCCGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGAACCTAGCCAGAAATGTCTTGTACTATACAATCTGATCCGAACAATATTCTACCGTACGCTAGCAGCACAGTTAGCAAATGGTTTGGTTAGGTTTAAGGCAAGACAATCTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTCCATCCAAACCTGGAACAACAATTTCAGATGCATATACTACTACTTTACATTTGTTCCTTTTCCTGCATAAAGACCGTCCATGTCTTACTGAATCCAGTAAAATTAGCACATGTATCCTCCTTGTCTGATCTGATGACGAATCATTAATTCCCTCCCATCAACCTTGCATTTCAACATCCGTAGATTCAAGCTCCATATTGTTTGACTGAATCGAGGCAACGAGATCCTCAATTCTCAGAGGAGCATGCCTAGCAGCGTACTGGAACAAAGCCTGAACATACAAAAGGCGATCAAACCATTGGCTACAAGGCATGAATGAGATGATATTTTCTCAGCAAAAATGCATTCTCAAGTGGCCACTTACTTTCGAGTGGCTGTCAGCAAAAGCACGAGCACGATTCGGCTTTCCAACAAATTGAAGCTCACTAATCTCCATCTTTCCATCCACAAGTTTCACTCTTTCATCTTTGACAGCAAAGCGAAGAAGATTCCCTGGCCGCAGGTTTGACTGTACAGCCATGTAACAGTAAGTTAATGCTTCAAACAGGTTCAGGCAAGGACTGAAATCACAGTGCAGGAAGGCACTTCTGGTGCCTAATCAGGATAAGCACGTTACTTTATAAGCATAGCATTGTAACACTTCCAGATAGGGTATACAATCAACATAACCATTCATTGGTTTCATATCAACAACTAAAAGCTTGGAGCACCATGTGGAAGGTACTCTGATGCAGATTTCCACCCTTAAAAATCGGGGAACCATGAAAGCATATAATCCTATGTAATTATCACTTTTTTTAATGTAGGCTGCATTACACAACAGTACCTTCTGAATGAATTCATTGTCCAAGCTACCAAAGACAACTGGAGGATCATCAGAAGTAGTAAGCTTTCCATCCTCTTGCAGATCCAGCACAATCTGATTGTACAGGAAGAAACAAGGCACGTGAGAAGTTTTGTATTGGGGAACAGAAGTAGTAGCAGGGCATCAGAGTTGACAACATCTTCGTCTGAGAGTATTGAAGATGATAATTATTAAATATGATGCCCTTTTGTAAAGAGAAACAAAATGCCCCAAAATGGAGTTCTATCGGCAAAATAATTATCTTGCTAGCTGCAACATGAAGCAAACATTGAAAGAATGAAACATACATGCTGCTCACTTGGGACTTGTCCCTTGCTATCTGTGTCAATAACATATTGACTACAAGCCTCATCTTTCCAGACCAGTGCAAGGGGTGTGATACCAGCTAGATAATGTGCATGCCTTTTAAGAGAAAAGACAACAAACAGTTAGTCAATGCAGTGATGTAAACTGTAAAGGCAGTTAGCAGATATGAGGGCATGTCTAACAAAGAAGACATCATCAAAGGTAGAAAGAGAAGTTACTTGTTGTAAAACAGCAAGCCATCTTTCACATATGGTGTGCTTCCTGAGTATGCTGCTTGAAGACCCTGAAGCGTGCACTCGTATATAGGGACAGCACTGAATCTGTAGCGATGGTACGTTGATGGAGGATCACCAGCAGTGGTCTCCATGAGCTTAGAATTCACCCAAAAGAACCTAAACTCAGCGGTGCAGTCGTACAAGGAGTAGCCTCTCCAACAGATCATATCAATGATGTAATATGTTTCATCAGGCTGCAGCACAAGAGAGACGACAACGTTATGAATGAACAAGCCAAAAACGAAAGAAAGAAAAGGCAGGTCAAGAAGGATGGATCAGGTGGTAGCACCTCATGAAAGATGCAATCAAGGATGGAATAGGAACTTGCTGGTCCGGAGATGTCTCTCTTTGATCCATTTGGAAGAGCGGAAGGGAATCGGTGGAGAATGGATCCATTTCGGAGCCTGCTAATGGTGATGCCGTTGCAAGAGACGACCAAGCACCGTTTCCCGGCAGGTCTGGCAAAAACATGCCTACACATAGAGAAGAATTGTTGAGGCCGATCCTTTGTTGAAACTTGTAGTAGTAGTAGTATACTACATACAGTTTAATAAGCAGTAAAAGTGAAATTTGCAGGTT

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CDS seq

ATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATACAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGA

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Protein seq

MQVQMQMQQATTVLSSSSNRPWTLWCHPVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAIQRVVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGVDGAVAVPPDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRIWRRGFDSGELRSEVYDDAADALRRWRAKAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGLEVIISVRPGNAPLPDNHGFHTITSFAEISI

Function Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:B8BKI7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0000110 OsLaMu_01g0000110.01 Chr01 61122 64628 + NAM
CDS seq

ATGCAGGTGCAGATGCAGATGCAGCAGGCTACCACCGTTCTCAGCAGCAGCAGCAACCGGCCTTGGACGCTGTGGTGCCATCCTGTCCCAGTAGTCTCCTCCCCATCCCACGCCAAAAATAAGAAGCATGGCCTCCGACTCCGAGCAGGCATGGCCATGGCCTCCTCCGAGCTTCCTGACCTGAGCGCAATACAACGCGTGGTGCTGGACATCGAGGGCACCACGACGCCCATCTCCTTCGTGGCGGACGTGCTCTTCCCCTACGCGCGCGACAATGTCCGCCGCCACCTGGCCGCCACTTACGGCAGCAGCGAGGAGACGCGCGCTGACGTGGCCCTGCTGCGGGCGCAGGTGGAGGAGGACCTCGCGCAGGGCGTCGACGGTGCCGTGGCGGTTCCGCCGGATGCGGAAGGGGAAGGGGAAGGCGCCGTGGTGGAGGCCCTGGCGGCGAACGTGGAGAGCATGATTCGCGCGGACAGGAAGGTGACGGCGCTGAAGCAGCTGCAGGGGCGCATCTGGCGGCGGGGCTTCGACAGCGGCGAGCTGCGGAGCGAGGTGTACGACGACGCGGCGGACGCGCTGCGGCGGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACACGGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGATCTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGACTGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGA

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Protein seq

MQVQMQMQQATTVLSSSSNRPWTLWCHPVPVVSSPSHAKNKKHGLRLRAGMAMASSELPDLSAIQRVVLDIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEEDLAQGVDGAVAVPPDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRIWRRGFDSGELRSEVYDDAADALRRWRAKAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEAAAAKTAGLEVIISVRPGNAPLPDNHGFHTITSFAEISI

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0000110 OsLaMu_01g0000110.02 Chr01 61115 62608 + IsoSeq
CDS seq

ATGGTTTTCACACAATCACATCATTCGCTGAAATCTCCATCTGAACCTAGCCAGAAATGTCTTGTACTATACAATCTGATCCGAACAATATTCTACCGTACGCTAGCAGCACAGTTAGCAAATGGTTTGGTTAGGTTTAAGGCAAGACAATCTGGG

Protein seq

MVFTQSHHSLKSPSEPSQKCLVLYNLIRTIFYRTLAAQLANGLVRFKARQSG

OsLaMu_01g0000110.02OsLaMu_01g0000110.01AS61015 bp62000 bp63000 bp64000 bp65000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 61476 61996 + OsLaMu_01g0000110.01 OsLaMu_01g0000110.02,OsLaMu_01g0000110.01 All

Expression

Leaf Root Panicle
FPKM 1.482029 0.868022 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0101200 RBH 2.255448 2.956198 2.913589
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g01120 RBH 2.612332 3.478844 0.818210
Nipponbare | IRGSP 1.0 | RAP-db Os01g0101200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0000110 RBH 0.476410 3.272695 1.182238
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0000110 RBH 2.586427 0.000000 2.123926
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0000110 RBH 1.701038 0.997130 1.130021
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0000110 RBH 0.432424 0.068895 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0000110 RBH 34.572571 1.248855 3.801920
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0001000 RBH 47.7205485 2.997649 1.576491
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0000110 RBH 1.407673 0.179818 0.359784
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0001500 RBH 10.5784065 1.111239 2.5316235
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0000110 RBH 0.852625 0.156181 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0000110 RBH 3.963054 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0000110 RBH 23.976044 7.477658 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0000100 RBH 2.630224 0.000000 0.732732
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G000120 RBH 0.610334 0.000000 0.454878
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0000110 RBH 2.146088 3.533438 0.732450
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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