Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0074580 | OGI:07001370 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg563:95277-103262 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatggtttaccagatcatctatattttttttagaaatataatactacaagatcatcatctatattactgtaggaaaactggtcgcacagctaacatttgatttcaagacagcatcccaaatacattaacaattgacaacgtttttttttctttttttgttattactaaacaataatcctcaagcaaataatatggtgccatgccaacattggtgtttgcaaaccagctctttcttcatcatcattcgtcatcactgtcaaaaacgaccgccttccgacgatgaactgcctgctgttttcttggtggagaatcatcgtccgagtcgatctccttgcgcctttggctggcactgccacccccagattctctcctccgttttggttcctgcagcagaggctcctctttcagtttcgatttatatacagctagcctcatcatgtttttctttcaagtttgctatattactacaacaaaaaaccaatcgtagattcctttcagctattatatgctaactagtgtgcagaagtagtcaaacatgaactgagtacattttttctgtttccttttgtttcacttcaacataaacaaagcagcaagtctgcctgctgacctgttaattactctgttgcagaattactgagcataaactacaaaatgtcagcaatgtaaactaaaatatcaaattggtcatattcctagtggttactgtcaggattcttgaaaatcttgccctcacatatgctgcaaaagtatttaattccttaatgtctttactgggcatatccaagaaagaacctgacttgcaaaatttgaaccttacgacaatgttcattcgtatcacatttacataatcacattgctaacttgtgaaaaagaaaaccaagagttttgagtccatgacatcggtcttacctcaatttcttcatctgacatggctgcttcttcttccacatcttcctcatattcatcttcttcatcaagctcatcttccctcccctgggttggtgagtgctcaatatcctctccttcagtttcatactctgactcctccctttcactctcagaatattcatttgcctgtcgtctaggcggatgagcaggaaaggatggtttgcgaggaatgtttctgcccatacttgactgaaaatgtgcaaacaatacagattatgtataaacagcaatacattggttaaaaataacaagggttacatgctgatgagttgctcaccttctttgcactaactatgcgcctctcagctagtgcttcagcctccagttcatcctcaaaacgactacgtgctggcattcggcgagaaccatattgatggtcaggttcctcgtcctgccaaaaatgaaattgaataaattattgggcataaccagtactaaagtcttattaattgtcacatcgaatccaatctcctgccagaatgcaccaaaaggaaaagttgcaaatcatcacagcacattttactcctacaaaaacagctattgaacacgtgtatctaaatccaaggaaaaacatcatgtgagctacaacagcagaataaaattaaccatctacccagaatctggatatgtaaccattcagtaaggtacactcacagttgagtaaaccagctaagcatagaaaaaaaaatctcacacaaacaaactgccaacataatgatctatgtatctgagccatttacagtaagcttaaacaagtccatattgcccctatgaaattacagataaacaatttatgtgtgcgtgccatgggcatacgatagcagcctacatggtttcaaaaaaggaaataaaattaaccagacaagaaaaatttggatatcatcgcgtaaataacatgtaggactgaagaggatttcagttttcactgaacagagtttttaccatgcaacagctttaggtcggaaagtgaaattgaactcaaatcacttgctaaaatcaaataaggagtgggcagtgttaataagatgtggagggaaatttggaagcataggaacaactgtttgtggcagtgtgcaactctgtatgtggcagcggtgatccaatcagtagcaaatgaaggtgcactttggtgcttgcctggagtttcaaagcttcgaaacctgtttgctaggtcgatagcccttgcaacttaactaggtcattcggtttgtttggttcttttgtaagacatgacggtgtttagggagtgggattttttctaaactcccctgtgctgcaccgcccctacgcagatctcctgcatgttcgagaaaagaaaaaggtgtggagggtcttgcactttaccagcattatattgcagccaaaattggccgcacagctaaattggaaagactgacgatcattcaaatggcatttactagtgagatttaataggatgcgtctggactaaatatcatttatcactaatactagaactgtatgaacaacaataactgattgtatcaatgaccttaagtggaagaaataagagaaatgacaagaaacccacctcatctaatgcatcttccaaaaatccaggagaaagctgccttctttgcctggcaggctgtgtgtacttgcggctaaccttttcttttttgcgttgaagaattgaatgggctcgaatattttggcccaaggcctgcatagtgaaaagggacaaacttcattcaaaatgcatatataacaagtttagaacagaaaggaaatacagcaaagcatggaacaggattaaatgcatttactaaatcggcatgtcaactatttgattattgcgccttcacaaaaggaaacttaaccctatgtgatttactttttgtgaaaagttcactggatcaagccacaataaatgctatgcagcgtagcagtaagaacaaatcacgttacaataacttttagactctcaaatcaaagctgaaactcacaggatctagaacgcgtgttgaactgccacagaaattgagctaatcaatgcttgcttatgcattggagaaaaacatgaaaacacacaaacaagagaatttgctgaatacaaattgcagtattgttggaaaatgggacctctgatatcacattgatatttgttggaatgacgacataaatttcttaatcttagaactcatcctctcatcataaaaggaagaaaaaaaaacagagaaagcaacaagattgtggaactcattcaaatgatttcataatgattacatctttatttttaggataaatatgatgaaaatcttgctctttaccattcaagagatttacagtcaacatgccaagatttgcatgtaatgtttttagacactggagaatcgtcaatttaccaactatagctaaaaatgttatcacgtgtttgtgatccaagaaaaacaatttgcttgctgattgtcatgctctaaatttgcttgctgattatcctgctctaaaagcatcaactgtcctctcaatcattttatatagtgatcctgactagctatgcgcccaagaataatcaaatttgaagctcatatttccatgaagaagaccattattgtagcttgcaacattagttagtactttagtagcatttccttaatggtactagcttaccagttatgctcatattcacttgtttgtcagttatctggtacaaattcagtatctgctcaaatctctcatggtcagataccaaattatatttacttaatttgaagtttgcattctgactatcttgctgattattctactctattaagtattacatgcatccaactcctataatctaaagaaataaggggaaaaatataaatgtacatgttacgtcaagcccaatggctatcccctatagaaaaaaatggaaagtgagtataacacaacacaaatcatgttgtttttgacataggaaccatatcagaagcagcatttggacaaatgtaagtcatacacatgtcattcagtgttgcatatacatccaatgaattaagaaatggagtttttggttaccctttctttttcctgcttcactttctcaggatccttagattcgatccatttttgcatcttaacagttttcttattctgagaatcaacaagagcagttaataaacgatgtgatttcgaagacaaggaagatggcatgaatctcattttccgtaagagccttccttgtgattgaaggactccctgcattacaattcaaaattatatcaggttagtgagacctatgcggtaagagcatgaatgaacagaggtggtagcgaacattgttgaattgcagacaagaagtactttaccttcccattcctcagaaacagatgggactgatcatgatgtgcttcatgtacagatatatcaagaacttcattgccaatcagcagctgcatcgttccatctttccattttacaatgcgcgcattactttcacactgcaacaatgctcatttatcatatgcatagccacatagtgcaccgaccacctgtcacaaactacttaaaagggcaatgaccaaaaaaaaggaggaagaaaaagaaacagagcaagcatcttatggtatgtataataacatatatattcttttgcagggaatacataataacagttgggcaagttggctatgagagaagactcggtgcaagcatcactaaaggctagttcacaaccctgattattgtaagaaagttaagaagctgcccagagcatcttcagggagggaaacttagaagatggcgacatagcataactgagtctgtaatgctaaaggatttcaaaatgctacttgaaaaacattccacttacagatgtagtgccattagcattcttaacggttctccaccgcacaatattgtcctccagtcgtatcctttttttagtcccagattcatctgtaacaaatacatcctcctccacatatgttttaggatcaaaaggcttcgggtcaatccccataatgtttgataccttgatcacattcatctacaagttaagaaatcagtcagtaacaaaaaaatctatgaatagctgcaaaagcacaaaatatttaagcaccaatcattaatattcctagtcaagcctataacatgacagcaaagttctcttcaataataccatgacataaaaaagaaatttcaactactaaagggccaacgtcacataataagtacaagcatggagttcatagcagcacaggttctttatttctgacattgtactgcaccagtcaattgtgcagttctgcacaacaacatttacgaacaagcacaaaatatcagcaattaaacagtaacagatacaaagaatgacaaataaaaatctggtgtatatacagcaacgcaataaatatccatcaaagataactgatgcctgccaatatataatcatcttgtcagaaaagataacagtgctgtatggtcaaagactgaaagatatatggttcgaaaggggtagtcaactcactctgtcgggttgagctggcggctgcttaagtggaaccaccaggttcaacggtggaccaactggtttctcttttggtttcaattcacgattttcatctgattcatatctcatatcttcatcagctactacatcctcaggctgcaaatccttctcatagtgaccttcatcttccatgggtgatctctaaaaaagaaaggaggaaattttgagtacctattgcatccagaaaaaagttaggtgtgaaagttgatcaatactgactggagcacagatctatattcatgcagggtacatacaagaaatgaatagggagaaagattagatttttagataaatacataattagcaaagatgctacctgcattagtaaatttgttacatagttaagcatcatatggtaactctgaatttaaaagaatataaaacacaaaattctctacatattgaattacatgaatacttttgctgatattcagtttaaacaacatgccaccaagtcatcgttagcatactgtacttgctcagtgcagaatgtataaaaaaatggctctgtttagaatttctgtgaaaatctttgctggttttctttaagcccgacaaaagatattcctactttaagcctagaatggtaggtaacttgagcataaaaatctcacatgggaatcttcatcaatttcatgttgatcacgatatggagcaggtccatcttcatcgctttcaccaaatacatcacggacaacttcatgatctctctcctcctcaactggcgagctgcataagattatggttcttacgagttactacttactacaaaggtagggaggatatacataggcaaagagtgcatattgagtcactagcaaaatactaagaaacagttaatgaagcagtggatagattgttactccctccgtactcgtaaaggaagtcgtttaggacaatgtttaagtcaaaccttgggaatataaatcatgaataactctcaagtagttgagtttaaaaatgtaaaaattatatgaatagatttgtcttgaaaaatactttcataaaagtatacatataccactttttaataaatatttttatagaaataagtcaaagttgtgttttggagaccgtgtcggtgtcctaaacgacttcctttacaagtacggagggagtacgtcgtaatgccagatctagaaagcatataatgcacagacaataaataggattctgattgttttcccttaaccttggtgttttccttgtttgatgaggttcctcatcttcatgacctcgaccagcataatagtcatcttcagacccctcagattcagaggcaacaactcctcttcttctgctagctactggccgctgctgatagccttcgtcttcactatccatgcctgctgcatcattttgcatcacccggtcactaaattctctttctggggagctctggaccttttccccatcactttctccttgatcaagatcagcacggtgagcttcagcttcactttcttcttccatcccaacttgcccctcactttcaccttctccttccgcttcaccttcccctccattatcagcctcaccttccacttcttcctgtacaagcaaatcaataagcaagcatcacatcagatagctgcagcggaagtatacagaatgcatcgatgaagaactggggcactagaagagcctacaagagctaaactctgtggcaagatcagcaaggaatgacggttcgatttttacaccgtgataggtccagtatgtctccaaatcacttgctacagctgggcactaaaaaaactagcattacacacagaggatttacacttgagactgacagacttgcgcgcaaagtgtgaggaaacaaaatgatggatttctgaaatgccagtggtgttcaagaggcaatgctccatatcacgtcacctaaaattacaatagttttggttcaaaaaagtacaatattctactagcaagtttattatcaagatgttcctttcaaaggaacatcaatcctttcagaattctcgaacagatgattggggatcagcgaagcagaaatgtactggttcatcaaactgcagtatcccaatggcgagatttattccagccgaacaaacctaagccctaaccccaggacgaggggggggggggggggggggtggacggggacaggaagcaggggaggggagatttgagatttttaccgagtggtagccggagcgggcatggccttcgctacggacgtcgtcttcgtcgtcgtcgtcgtccaccacctggtggcgaagcagctgctgctgctgcggatgcgggtggtcgacctcgtcgacgacctcgacggcctcgtcgtcatcctcttcgtcctccgactggtcgccgaagaggttctgcatcatctggttcctcgtctcctcctcgacatccctctccctgtcgccgccagccatcgccgccgccgccgcctctcctctccaattcttcttcaattggggatttctttcgaaaatgctgtcaaaagtgcggccgatggaagccgaaaaaatggggcgcctcgctcgctctcc
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| CDS seq | atggctggcggcgacagggagagggatgtcgaggaggagacgaggaaccagatgatgcagaacctcttcggcgaccagtcggaggacgaagaggatgacgacgaggccgtcgaggtcgtcgacgaggtcgaccacccgcatccgcagcagcagcagctgcttcgccaccaggtggtggacgacgacgacgacgaagacgacgtccgtagcgaaggccatgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaaggtgaagcggaaggagaaggtgaaagtgaggggcaagttgggatggaagaagaaagtgaagctgaagctcaccgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaatttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagacgaaggctatcagcagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgagggctcgccagttgaggaggagagagatcatgaagttgtccgtgatgtatttggtgaaagcgatgaagatggacctgctccatatcgtgatcaacatgaaattgatgaagattcccatagatcacccatggaagatgaaggtcactatgagaaggatttgcagcctgaggatgtagtagctgatgaagatatgagatatgaatcagatgaaaatcgtgaattgaaaccaaaagagaaaccagttggtccaccgttgaacctggtggttccacttaagcagccgccagctcaacccgacagaatgaatgtgatcaaggtatcaaacattatggggattgacccgaagccttttgatcctaaaacatatgtggaggaggatgtatttgttacagatgaatctgggactaaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatcttgtgaaagtaatgcgcgcattgtaaaatggaaagatggaacgatgcagctgctgattggcaatgaagttcttgatatatctgtacatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattaactgctcttgttgattctcagaataagaaaactgttaagatgcaaaaatggatcgaatctaaggatcctgagaaagtgaagcaggaaaaagaaagggacgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttgaggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaagtcaagtatgggcagaaacattcctcgcaaaccatcctttcctgctcatccgcctagacgacaggcaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccaggggagggaagatgagcttgatgaagaagatgaatatgaggaagatgtggaagaagaagcagccatgtcagatgaagaaattgaggaaccaaaacggaggagagaatctgggggtggcagtgccagccaaaggcgcaaggagatcgactcggacgatgattctccaccaagaaaacagcaggcagttcatcgtcggaaggcggtcgtttttgacagtgatgacgaatga
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| Protein seq | MAGGDRERDVEEETRNQMMQNLFGDQSEDEEDDDEAVEVVDEVDHPHPQQQQLLRHQVVDDDDDEDDVRSEGHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHRADLDQGESDGEKVQSSPEREFSDRVMQNDAAGMDSEDEGYQQRPVASRRRGVVASESEGSPVEEERDHEVVRDVFGESDEDGPAPYRDQHEIDEDSHRSPMEDEGHYEKDLQPEDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPDRMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPEKVKQEKERDEEPDHQYGSRRMPARSRFEDELEAEALAERRIVSAKKSSMGRNIPRKPSFPAHPPRRQANEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGGSASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDSDDE |
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| Function | Protein LEO1 homolog [UniProtKB/Swiss-Prot:Q9FNQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0074580 | OsLiXu_Ung0074580.01 | ChrUN-Ctg563 | 95277 | 103262 | - | NAM | ||
| CDS seq | atggctggcggcgacagggagagggatgtcgaggaggagacgaggaaccagatgatgcagaacctcttcggcgaccagtcggaggacgaagaggatgacgacgaggccgtcgaggtcgtcgacgaggtcgaccacccgcatccgcagcagcagcagctgcttcgccaccaggtggtggacgacgacgacgacgaagacgacgtccgtagcgaaggccatgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaaggtgaagcggaaggagaaggtgaaagtgaggggcaagttgggatggaagaagaaagtgaagctgaagctcaccgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaatttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagacgaaggctatcagcagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgagggctcgccagttgaggaggagagagatcatgaagttgtccgtgatgtatttggtgaaagcgatgaagatggacctgctccatatcgtgatcaacatgaaattgatgaagattcccatagatcacccatggaagatgaaggtcactatgagaaggatttgcagcctgaggatgtagtagctgatgaagatatgagatatgaatcagatgaaaatcgtgaattgaaaccaaaagagaaaccagttggtccaccgttgaacctggtggttccacttaagcagccgccagctcaacccgacagaatgaatgtgatcaaggtatcaaacattatggggattgacccgaagccttttgatcctaaaacatatgtggaggaggatgtatttgttacagatgaatctgggactaaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatcttgtgaaagtaatgcgcgcattgtaaaatggaaagatggaacgatgcagctgctgattggcaatgaagttcttgatatatctgtacatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattaactgctcttgttgattctcagaataagaaaactgttaagatgcaaaaatggatcgaatctaaggatcctgagaaagtgaagcaggaaaaagaaagggacgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttgaggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaagtcaagtatgggcagaaacattcctcgcaaaccatcctttcctgctcatccgcctagacgacaggcaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccaggggagggaagatgagcttgatgaagaagatgaatatgaggaagatgtggaagaagaagcagccatgtcagatgaagaaattgaggaaccaaaacggaggagagaatctgggggtggcagtgccagccaaaggcgcaaggagatcgactcggacgatgattctccaccaagaaaacagcaggcagttcatcgtcggaaggcggtcgtttttgacagtgatgacgaatga
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| Protein seq | MAGGDRERDVEEETRNQMMQNLFGDQSEDEEDDDEAVEVVDEVDHPHPQQQQLLRHQVVDDDDDEDDVRSEGHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHRADLDQGESDGEKVQSSPEREFSDRVMQNDAAGMDSEDEGYQQRPVASRRRGVVASESEGSPVEEERDHEVVRDVFGESDEDGPAPYRDQHEIDEDSHRSPMEDEGHYEKDLQPEDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPDRMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPEKVKQEKERDEEPDHQYGSRRMPARSRFEDELEAEALAERRIVSAKKSSMGRNIPRKPSFPAHPPRRQANEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGGSASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDSDDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.064503 | 0.0 | 1.575849 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0109600 | SBH | 1.875170 | 3.851320 | 4.499899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01880 | SBH | 1.273816 | 2.178179 | 1.167058 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0109600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000610 | SBH | 0.803191 | 5.092445 | 5.123502 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000650 | SBH | 0.157296 | 0.857579 | 2.480677 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000580 | SBH | 1.416286 | 2.997312 | 8.862645 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000580 | SBH | 0.359291 | 0.162318 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000600 | SBH | 4.411851 | 7.684282 | 11.774889 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0318700 | SBH | 6.298765 | 23.323239 | 20.0808145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000590 | SBH | 0.430341 | 0.537451 | 1.089582 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0006300 | SBH | 12.4044475 | 12.144475 | 21.8920325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000610 | SBH | 0.540816 | 0.167154 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000640 | SBH | 0.396336 | 5.593982 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000630 | SBH | 6.923875 | 43.955902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000700 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000630 | RBH | 0.322413 | 9.975264 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000630 | SBH | 0.526064 | 4.797099 | 2.908731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000640 | SBH | 1.010540 | 8.624732 | 4.749391 |
