Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0070820 | OGI:99064530 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg534:94582-96416 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccggactacttgcctctctggccataaggaaagcactggagaagctctcctcctacctggcagcgagcctttcggcatcgtcctcgtctacgtctgggagggcaaggcacgacaaggaccttgaggacctgaggatgctggagcggaccatgcgcaggatccatgctactgtgcatgacgcggagcagcactggaacatcagggaggagtccaccaagctgcggctcaaggagctcaaggatcttgcctaccacgcggaggatgtggtggatgcatacgagatgaatcgccaaaaggtggaggtcctcaaggcatttgcaggcgccgccagccacaagcgcaagttccagcaggtaaatttctgcttctgccattaatccGgggaccacctatacatttgtcgacaaattttctcctaaaaatttgatagatgtaattataatacaatcgtagtgtaattacactataacttatatgtaattacactgtaacttgcatgtaactacagtgtaacttatatgtaagtttcacataattttgaatcgttagatctattataagatttattttggtgaggaagaaaacaaatcatagcacacacatatgtgaaagaatttgtttccacgacctccattttaccgaaataacatgttacggagagatttttgaaagttacatataagttacattatagttacagtgtaattacactataattatactgtaattacatctgtcaaatttttagggaaaaatttgtcgacaaatatatagtaaaattgttaatctgattcccgagtgggaaaacaaaagcaaagataataactaattaatcgacatatatattttcttggaataggaaagcgagggcttgttctgtgattctcatacggttgccattacagacgagctggctatcaaaacaaggaaacttattgagcgatttgacgagatcaagtattattcagacaactttactttgtcggagaatgatggagagatacggcttactcctgataTtagtggtttacagacaagctctgttgtatttgagaatagcattgtgggaagagagaaagataagaacaacgttgtagaaaagctgttgtccaagagaggtgacaatctagctagtccggtttctgtcatggcaattgttggtatggaaggattaggcaagacaacgctggcccagctggtgtataaccacccagaagtgtgcaagtattttgatgtgcacgcatgggtttgtgtatctgagcagtttgatatcaacaacataacacagagcatcattgtcgcggttacaaaggagaagtgtgatctatcagaacttcctaatctccaagagagactggtagaagaaattaagcaaaagaaagttttgcttgtgttggatgatgtgtggaatgaaagaagagattgttgggatctgctgtgcatgccaatgaacaccacgaagctttgtatgattgtagtgaccacccgcagcgagaaagtcgcaaagcttgtgcagacaatgccaaacttctataacctagaatgcttgagttttgatgagagctggatgttgttcaagcaagttgctctgactgttaaccaagaaaatgctccaccaaacctggtagagattggaaaggctgtagttaaaaagtgcaagggcttgcctttagcgatcaagaggataggcagcatgctgcgctatgaaacgaatgagcagagctggttGgaggtcctagaaaatgtgctctatgacatggaccaaccatggaacgaggtttcgccatccttggagttgagctacaggcatatgcctgtatacttgaaatga
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| CDS seq | atggccggactacttgcctctctggccataaggaaagcactggagaagctctcctcctacctggcagcgagcctttcggcatcgtcctcgtctacgtctgggagggcaaggcacgacaaggaccttgaggacctgaggatgctggagcggaccatgcgcaggatccatgctactgtgcatgacgcggagcagcactggaacatcagggaggagtccaccaagctgcggctcaaggagctcaaggatcttgcctaccacgcggaggatgtggtggatgcatacgagatgaatcgccaaaaggtggaggaaagcgagggcttgttctgtgattctcatacggttgccattacagacgagctggctatcaaaacaaggaaacttattgagcgatttgacgagatcaagtattattcagacaactttactttgtcggagaatgatggagagatacggcttactcctgataTtagtggtttacagacaagctctgttgtatttgagaatagcattgtgggaagagagaaagataagaacaacgttgtagaaaagctgttgtccaagagaggtgacaatctagctagtccggtttctgtcatggcaattgttggtatggaaggattaggcaagacaacgctggcccagctggtgtataaccacccagaagtgtgcaagtattttgatgtgcacgcatgggtttgtgtatctgagcagtttgatatcaacaacataacacagagcatcattgtcgcggttacaaaggagaagtgtgatctatcagaacttcctaatctccaagagagactggtagaagaaattaagcaaaagaaagttttgcttgtgttggatgatgtgtggaatgaaagaagagattgttgggatctgctgtgcatgccaatgaacaccacgaagctttgtatgattgtagtgaccacccgcagcgagaaagtcgcaaagcttgtgcagacaatgccaaacttctataacctagaatgcttgagttttgatgagagctggatgttgttcaagcaagttgctctgactgttaaccaagaaaatgctccaccaaacctggtagagattggaaaggctgtagttaaaaagtgcaagggcttgcctttagcgatcaagaggataggcagcatgctgcgctatgaaacgaatgagcagagctggttGgaggtcctagaaaatgtgctctatgacatggaccaaccatggaacgaggtttcgccatccttggagttgagctacaggcatatgcctgtatacttgaaatga
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| Protein seq | MAGLLASLAIRKALEKLSSYLAASLSASSSSTSGRARHDKDLEDLRMLERTMRRIHATVHDAEQHWNIREESTKLRLKELKDLAYHAEDVVDAYEMNRQKVEESEGLFCDSHTVAITDELAIKTRKLIERFDEIKYYSDNFTLSENDGEIRLTPDISGLQTSSVVFENSIVGREKDKNNVVEKLLSKRGDNLASPVSVMAIVGMEGLGKTTLAQLVYNHPEVCKYFDVHAWVCVSEQFDINNITQSIIVAVTKEKCDLSELPNLQERLVEEIKQKKVLLVLDDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMPNFYNLECLSFDESWMLFKQVALTVNQENAPPNLVEIGKAVVKKCKGLPLAIKRIGSMLRYETNEQSWLEVLENVLYDMDQPWNEVSPSLELSYRHMPVYLK |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0070820 | OsLiXu_Ung0070820.01 | ChrUN-Ctg534 | 94582 | 96416 | + | NAM | ||
| CDS seq | atggccggactacttgcctctctggccataaggaaagcactggagaagctctcctcctacctggcagcgagcctttcggcatcgtcctcgtctacgtctgggagggcaaggcacgacaaggaccttgaggacctgaggatgctggagcggaccatgcgcaggatccatgctactgtgcatgacgcggagcagcactggaacatcagggaggagtccaccaagctgcggctcaaggagctcaaggatcttgcctaccacgcggaggatgtggtggatgcatacgagatgaatcgccaaaaggtggaggaaagcgagggcttgttctgtgattctcatacggttgccattacagacgagctggctatcaaaacaaggaaacttattgagcgatttgacgagatcaagtattattcagacaactttactttgtcggagaatgatggagagatacggcttactcctgataTtagtggtttacagacaagctctgttgtatttgagaatagcattgtgggaagagagaaagataagaacaacgttgtagaaaagctgttgtccaagagaggtgacaatctagctagtccggtttctgtcatggcaattgttggtatggaaggattaggcaagacaacgctggcccagctggtgtataaccacccagaagtgtgcaagtattttgatgtgcacgcatgggtttgtgtatctgagcagtttgatatcaacaacataacacagagcatcattgtcgcggttacaaaggagaagtgtgatctatcagaacttcctaatctccaagagagactggtagaagaaattaagcaaaagaaagttttgcttgtgttggatgatgtgtggaatgaaagaagagattgttgggatctgctgtgcatgccaatgaacaccacgaagctttgtatgattgtagtgaccacccgcagcgagaaagtcgcaaagcttgtgcagacaatgccaaacttctataacctagaatgcttgagttttgatgagagctggatgttgttcaagcaagttgctctgactgttaaccaagaaaatgctccaccaaacctggtagagattggaaaggctgtagttaaaaagtgcaagggcttgcctttagcgatcaagaggataggcagcatgctgcgctatgaaacgaatgagcagagctggttGgaggtcctagaaaatgtgctctatgacatggaccaaccatggaacgaggtttcgccatccttggagttgagctacaggcatatgcctgtatacttgaaatga
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| Protein seq | MAGLLASLAIRKALEKLSSYLAASLSASSSSTSGRARHDKDLEDLRMLERTMRRIHATVHDAEQHWNIREESTKLRLKELKDLAYHAEDVVDAYEMNRQKVEESEGLFCDSHTVAITDELAIKTRKLIERFDEIKYYSDNFTLSENDGEIRLTPDISGLQTSSVVFENSIVGREKDKNNVVEKLLSKRGDNLASPVSVMAIVGMEGLGKTTLAQLVYNHPEVCKYFDVHAWVCVSEQFDINNITQSIIVAVTKEKCDLSELPNLQERLVEEIKQKKVLLVLDDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMPNFYNLECLSFDESWMLFKQVALTVNQENAPPNLVEIGKAVVKKCKGLPLAIKRIGSMLRYETNEQSWLEVLENVLYDMDQPWNEVSPSLELSYRHMPVYLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0493100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30110 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0493100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014560 | SBH | 0.0 | 14.574969 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014520 | SBH | 0.0 | 0.730674 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014450 | SBH | 0.0 | 1.391383 | 0.505034 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014240 | SBH | 0.0 | 0.263177 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014510 | SBH | 0.0 | 1.082820 | 1.023822 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0273000 | SBH | 0.180791 | 9.692956 | 0.2507565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014810 | SBH | 0.0 | 0.204951 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0286500 | SBH | 0.480209 | 12.379383 | 0.6080375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014710 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014330 | SBH | 0.0 | 15.428655 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014320 | SBH | 0.0 | 0.198698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014310 | SBH | 0.0 | 3.946732 | 0.266399 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014570 | SBH | 0.0 | 4.281900 | 0.0 |
