Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0493100 | OGI:11051350 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:17509307-17509867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAATTGTTGGTATGGAAGGATTAGGCAAGACAACGCTGGCCCAGCTAGTGTATAACCACCCAGAAGTGTGCAAGTATTTTGATGTGCACGCATGGGTTTGCGTATCTGAGCAGTTTGATATCAACAACATAACACAGAGCATCATTGTCGCGGTTACAAAGGAGAAGTGTGATCTATCAGAACTTCCTAATCTCCATGAGAGACTGGTAGAAGAAATTAAGCAAAAGAAAGTTTTGCTTGTGTTGGATGATGTGTGGAATGAAAGAAGAGATTGTTGGGATCTGCTGTGCATGCCTATGAACACCACGAAGCTTTGTATGATTGTAGTGACCACCCGCAGCGAGAAAGTCGCAAAGCTTGTGCAGACAATGTCAAACTTCTATAACCTAGAATGCTTGAGTTTTGATGAGAGCTGGTTGTTGTTCAGGCAAGTTGCTCTCACTGTTAACCAAGAAAATGCTCCACCAAACCTGGTAGAGATTGGAAAGGCTATAGTTAGAAAGTGCAAGGGCTTTGCCTTTAGCGATCAAGAGGATAGGCAGCATGCTGCGCTATGA
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| CDS seq | ATGGCAATTGTTGGTATGGAAGGATTAGGCAAGACAACGCTGGCCCAGCTAGTGTATAACCACCCAGAAGTGTGCAAGTATTTTGATGTGCACGCATGGGTTTGCGTATCTGAGCAGTTTGATATCAACAACATAACACAGAGCATCATTGTCGCGGTTACAAAGGAGAAGTGTGATCTATCAGAACTTCCTAATCTCCATGAGAGACTGGTAGAAGAAATTAAGCAAAAGAAAGTTTTGCTTGTGTTGGATGATGTGTGGAATGAAAGAAGAGATTGTTGGGATCTGCTGTGCATGCCTATGAACACCACGAAGCTTTGTATGATTGTAGTGACCACCCGCAGCGAGAAAGTCGCAAAGCTTGTGCAGACAATGTCAAACTTCTATAACCTAGAATGCTTGAGTTTTGATGAGAGCTGGTTGTTGTTCAGGCAAGTTGCTCTCACTGTTAACCAAGAAAATGCTCCACCAAACCTGGTAGAGATTGGAAAGGCTATAGTTAGAAAGTGCAAGGGCTTTGCCTTTAGCGATCAAGAGGATAGGCAGCATGCTGCGCTATGA
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| Protein seq | MAIVGMEGLGKTTLAQLVYNHPEVCKYFDVHAWVCVSEQFDINNITQSIIVAVTKEKCDLSELPNLHERLVEEIKQKKVLLVLDDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMSNFYNLECLSFDESWLLFRQVALTVNQENAPPNLVEIGKAIVRKCKGFAFSDQEDRQHAAL |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0493100 | OsNip_11t0493100-00 | Chr11 | 17509307 | 17509867 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAATTGTTGGTATGGAAGGATTAGGCAAGACAACGCTGGCCCAGCTAGTGTATAACCACCCAGAAGTGTGCAAGTATTTTGATGTGCACGCATGGGTTTGCGTATCTGAGCAGTTTGATATCAACAACATAACACAGAGCATCATTGTCGCGGTTACAAAGGAGAAGTGTGATCTATCAGAACTTCCTAATCTCCATGAGAGACTGGTAGAAGAAATTAAGCAAAAGAAAGTTTTGCTTGTGTTGGATGATGTGTGGAATGAAAGAAGAGATTGTTGGGATCTGCTGTGCATGCCTATGAACACCACGAAGCTTTGTATGATTGTAGTGACCACCCGCAGCGAGAAAGTCGCAAAGCTTGTGCAGACAATGTCAAACTTCTATAACCTAGAATGCTTGAGTTTTGATGAGAGCTGGTTGTTGTTCAGGCAAGTTGCTCTCACTGTTAACCAAGAAAATGCTCCACCAAACCTGGTAGAGATTGGAAAGGCTATAGTTAGAAAGTGCAAGGGCTTTGCCTTTAGCGATCAAGAGGATAGGCAGCATGCTGCGCTATGA
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| Protein seq | MAIVGMEGLGKTTLAQLVYNHPEVCKYFDVHAWVCVSEQFDINNITQSIIVAVTKEKCDLSELPNLHERLVEEIKQKKVLLVLDDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMSNFYNLECLSFDESWLLFRQVALTVNQENAPPNLVEIGKAIVRKCKGFAFSDQEDRQHAAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0493100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014560 | RBH | 0.0 | 14.574969 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014520 | RBH | 0.0 | 0.730674 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014450 | RBH | 0.0 | 1.391383 | 0.505034 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014240 | RBH | 0.0 | 0.263177 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014440 | SBH | 0.258863 | 0.853887 | 0.836064 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0273000 | RBH | 0.180791 | 9.692956 | 0.2507565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014810 | RBH | 0.0 | 0.204951 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0286500 | RBH | 0.480209 | 12.379383 | 0.6080375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014710 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014330 | RBH | 0.0 | 15.428655 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014320 | SBH | 0.0 | 0.198698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014310 | RBH | 0.0 | 3.946732 | 0.266399 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014570 | RBH | 0.0 | 4.281900 | 0.0 |
