Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0069110 | OGI:11039150 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg519:474035-481543 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagtttccattattgatatcccccaaaagataatcttctccgtgtcccaagaacagctcataatggctgtgactaaatactcagacccaaagtgctaatatcatgtttaaacatgaaaatggtcactagatccaaaaaataaattacaattacacccaaagtgcataagtccaaagcataattttgtaaccagtttgaaaacataaatattctatattgtcagagcagcaaataaatcctcttgtactcagaccatgtccttctcctatggcagtctagtagctttgagtattgaccttggatccattctgtcaccctggcgaccttggaccatgtacttccattgttttccttcatcAaatgtgtcaactgtcaagaaaattaaagaacagtaaaatgagtaaagaacagtattagcttacatgatcagtaaaatgagtaaagaacaatatatgttcaggatggtggtttacatgattagtttcagcattagcttcagtaaagaacagtaaaatgagctcaaacacataacataagaaaagatgactcacaaaagaaatcttgatagcatacagataaatcttaggaccacagtggcaactaatatggcatcattagttgccaaaccaatgatattatatggttgagaatgtctatctccaattgttaatttgttaacacaagctctaaatacacagacctttcttatgtaataaaagatgcagccaatctaagtcccaaccccctttgtccatcccattctctactctattcccattctcaagtctcaatcctaaggccctaactaaacaaggaattgaagtgaaatttaaatcgccgactcactatcaaactaaacaaatatgaatataatttcaagtagaaaacaaggacgagaactaacctttggtgatgctaggccatttcacttctcagctaaattaaagcagactctaagtcatcttcgcaagcacacataaagacttctctatttgctggggtcttaagaattgcataatcctttgccttctcttgtttggtaacatccattgagctcaataaatacacacttgacaaaataatctgttgcttgtgaacataccttctctctagctgcaacttcttcctcggcttgtttactcctcatctcaaggtatcgctccatcatgctctccactcttgaattcttactagtcttgttatcttcTttttttgtctcctctttgctattaaagcctgtcttctttgctcttcagtaacaattcttgaatcctcagcttgagtttctttgtctctcgggtttctttggtctccaagcagcacaacatcagtttcttcctctcttgagtttctttggtcttcgagcagcacaacatcatcttgctcttgactatcatcttccaattcctgtactagcctcaggggtttctcatcttccattgaatcaaaggaggtgcagttgtgttttccctcagcaagatggcctgtgtaagaacaaggaaacagtacacactttaaattgtagataagtagcaatttttctaccaagttacttatatccaaacaaaatattcctaatgagtcacttattaatttggacaaagagaactcattaatttggacagcaagatcaaaacttaccgtcatatagctcaccaagtgcatcatacaagggaaagctggccttgttgttgcgaaactttttgatctttgggaatgtctacacatgcaaaagcataaccacaaatcattgtaaggcatcaaagaaatcacaaatcacatgcaaaggaagatattgatcacaaatccacttataatttgcatgttttgccacatagctggcgatccctcgaccatgcatctcttctcgttccaagaagacccgctttgttgtctgaccgctttcaacatcttgtaatctcttttcagttgaccctcctcttgaacttgatttttggtgaatgatacgcatttgttccctgcgtggaattccttcaccattctattccaacctttagtggtccagccattatctcctctacaaccattgactttgtactcgaaaaggatttcaacaagtgacttctccaactccgcgttccaaattgctctctgcttgacttggttgcctaaaaggaatcatctttagaatcatttacagacataatagatgtacattgtgttgagtattgagaaaccatgaacaaacaataaataccataccttttggagagcttgcagtcttcttagcaagtatgctttgaggagagactgtcttcatcctagtacttgctgcagatagcatcctaccaaacttaggagatccctttggaatcatactgagttttggtgaacctcttccaaccatagctgtcatattatacataaatttattcaactattacatgatgactcatattatacataactttattcaattattacatgactcatgactaatgtcgactaatgtacatgctgctgatactggacccacatctcttgagcaattgagtctagccacaacttcactgctagctatattgcctttgataaccacttggcaaatcaacaaagtctgttgggtcgatattatctggctgatcatctagccacaactcatctccttccatttccctgattagattgtgaaatatagcggttgcaatgcgtattttgacttgattcttcaacttgtggaatgttgcgactttaagaataggaaagcgcttcttaagcactcctagagtccttttcacatcgtagtgcatggcgatcattaaacaactctttaggattttgtggtcttctatgtccagccccaaactcttttaagtggtatttgactccccgatacggtgctagaaaagaagaggtgtttgcgtacccgccatcgacaagataagccttgcctggaggcacctcgaatcctttgctcatagcagacctcaacactctagagtccgtagcagaaccctcacatccactagaaacatacgtgatcttatggtcaaaatcacaggcaatcataacattgatgctcagtgttgacttcctatttctaaaaggggcagctttttcagaggcaattgaaataggaatgtgggtgccaccaatggcaccaaggcagtctttgaagaaaggaaagaatcttggatttgtggcaatttttggatggactagattagggttgggaggtttcaggaactcgcgagcaagacctggcagaacatgattgaagaagtggtttaggtggcggtgaaatgtatcattgctatggtcaaattggacctggagatcctcataggaagagttatggctgagcatctaaaaaaagaatccaagtttctcctcgatcttgattctcgtgtcaaggacaagttcgttccttcgaaggtaatcagccaaataattgaagatccagggttccatccggaaagctaccaaacaattcttcacgtgtccttggagcaaccgacggacctcctcctcacccgattcctttgggctatgacgttgttccttttcccctcatcggttagaacccaaaacagaaagggcagggaaaagaaagagcatcatgtcgtcgtcctctaacacaatctctcaaagtcatattcattggattactatataccaaaatagcagggcagtcatatatttattgaagaacagggcagccatatagaacaggacaataggagggagaaaactactggaatacctttcggagtcaaaacaaagtcccaggaaggaggcggctcgtcttcaccaattctaggaattgctggtacaatctgaataaaagcacaaagtaactagaaattaggaaatacagagagtcatcagatgtggacactgtcatcagattctactaattgaaatactttaacaatgaagaatgttcttgtcaattgtcaaggagatatgattgagttgtactattgattataggtctgccaaaaaaataaatgtttgcgtgcttcaagttttcaacacaacattataggataacacaagcacaggaatgggccacacaagtacacaatttacagatgattgacatgagaaataggagatgggattactgcctgagcaaagaaattttggagctagaaaaactgttttcatgcatcaacaacaaaagcaatccatatgagctatcctagcagcttagatcattctatccagtactttgaaggcatcaacagcagaacatgagtttggaacttaaaatagacaggataagttcctactgtccaatatcctctgcatttacataagaaatgaacttactaaaatctttcgagatgtctgcagctgcaaattccaacaagcatgagaatcaaaaaaaaaggagaaactaaagaaacatgtattaattcatctcacttgaccatcaatatgaaattttagaactgtaatataagctagaagatattgtatggtattatacaaacataagagcatttgcttttcttccttgccacttgtgtacttattcaacctaatattcgatttatcagtagccatgcccaagaaaggcagccaggaccacgaatcctcccagaaaggcagccaggaccacgaatcgaacaaaatcaagaaatccacacacacacgcataccaaggagatgttcggaaatcaagaaatcaagaaacctcatgttcggctcccctcgcggctgagccggagcagcacgagtgccgcttcgagcgcggcggcgagcgaagccagcgctcgcccctccccctcccccctctgctcccagagctcctccacgaagggctccagcaaccaaatccgccgcaagaactctagcaagaatcctaccaggaacaaggaagacgacggtgatgcgttaccggcgagaaggtagcggagagcgcggacgtcggatgggaagttgtcgccgtcgccgtcaacgtcagtgcgccgccacgccgtctcctcgcaccgcacgccgttgcctctcgtgtcaccagccgcacgccctcacctctcgcgtcttgcgtccggattggagtcggagggttcctgggggagggaggccaaaccgggcccgtttccaatccgggccggccgaaacgaatgacgattccgggtcagaccagatttttaaatgggccacttcgttccggttggatcagaggtcgttccgggtcgtaccgaacgaggcctgaagctgcttcggcttcatagcctattcttcaactccttgctaagctgttgttgcaggcgcgagggctccccgggcccggtggctcctcgccatggccttttcttgtgtcaaacatggaaggaattaatgcaaatagccgtcgacccgtgcgttgcacgggctattattatgatactacaaataataaaaatttaatcatatttttaatatagatgttaataaaaatctttgaatttattgatgtacatttttagatttttcgataaaatttgttagttggtgtacattatgtgtaaaaaaatcgtgtgcacacatcatgttcccctccattatagcttttcgtgacataataattaaatatgcataattaattagtatctaattgtatttggtttgaaatctaaaatgattcacgatttatgattagaaaatatccagttgtattcggtttggggtcttgatgtttcttttagagaaaaggctttggggtcttaatcttaatgttatcgtgatttaataattctaaaatcatgtttaataactattgaattgtaattggtttggtgtctcatttttgaattttcataattttgtagttccaacattcgtaattagtaagtatcgatttgtactgttattggagtaacaattatagaattttacataatttaatatttctgaaattaatcattaatcacttcatgcttgtttttctattctactcataattttgtagtttttagtttgatattcagaaattaggaattaataagttgcaagttgtaactttggaatcttcctttcagactaaactaaaaaaaACaaaataaaaggactaaaggattgcctatatggtatgtttaatttaaaataaattctaaaccagattattgatacatagtaacatcgaccgaaactgatggagtatatataatataaaaatatatttatgtcatatgaaatagaagtatgtagtgcttatgtgtgttattttcttcatcttttatgattcatcgacttgatgccaagtaatatgctaaatataaattagtcacacatgaattaagaaaggattcatttatagatgtataaacatattgcttatactacttaaaacatactacctccgttttttaaatagatgacgccgttgattttttctcatatgtttgactattcgtcttattcaaaaattttatgtaaatgtataagatataaatcacacttaaagtactatgagtgataaaacaactcataacaaaataaattataattatataaattttttaaataagacgaatggtcaaacatgcgaaaaaaagtcaacggcgtcatctattaaaaaacggatggagtatttaagtccacacataagatcgagctggattggtttgcaatgcttttgtaacattgtaatgatatggaagcgtagttggataattttcaaacgaaatttagcatgaatatacttaattatggagaattattggaggtacactacaattagaaatagagcattgccttgaggttaactaaaaaggtatttagttatcatcttcgagttacctcttccagaagatctagcttttatcccatcctactaactcgttaactctgaaaaaaatattagcaaaagcaacataataaataaatatatatataatatttgcctggactctagcttccatgatttggatcctgacaccaacatatattacacagatatagatgcacgtttaatagaattttagagagtctttatctcatgaccatgtgttgagacttgagaatacattcaggtgtatcgatgAaaaaaaaagagcagccatgaattgcattacgccatcaaaattttcatttatttgttcacgcatgtcgatgactgggtaccatgattattgcaattcatcctctgtcttctttcgcataagaacatgttgtgaggaaaaaatagggtcaaaatttaaaaaattctatgtagttgcaatacaaaagtcatccgataatttctccatagatttaaatcttaataaaggcatggaatttaatgagaaaaatattgcaaacagcagaataagcaataccaccaatgaagtaactacacggttctacaggagcggcaacagcagcaactcgtcatcgtgtgcatttcttcagtcaattaggcaggatggttgcatgtcctgcgaggattaaaaaacagtgttagaaacgccaagcaaatcaatcgaagttgcatgcctgcatgtataacatacgcacaactactgtctgcaggtatcttcatttcgctgcaaatcgggatgaagggtgagtcgttcat
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| CDS seq | atgaacgactcacccttcatcccgatttgcagcgaaatgaagatacctgcagacagtagttgtgcaggcaacggcgtgcggtgcgaggagacggcgtggcggcgcactgacgttgacggcgacggcgacaacttcccatccgacgtccgcgctctccgctaccttctcgccggtaacgcatcaccgtcgtcttccttgttcctggtaggattcttgctagagttcttgcggcggatttggttgctggagcccttcgtggaggagctctgggagcagaggggggagggggaggggcgagcgctggcttcgctcgccgccgcgctcgaagcggcactcattgtaccagcaattcctagaattggtgaagacgagccgcctccttcctgggactttgttttgactccgaaaggccatcttgctgagggaaaacacaactgcacctcctttgattcaatggaagatgagaaacccctgaggctagtacaggaattggaagatgatagtcaagagcaagatgatgttgtgctgctcgaagaccaaagaaactcaagagaggaagaaactgatgttgtgctgcttggagaccaaagaaacccgagagacaaagaaactcaagctgaggattcaagaattgttactgaagagcaaagaagacaggctttaatagcaaagaggagacaaaaaaAgaagataacaagactagtaagaattcaagagtggagagcatga
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| Protein seq | MNDSPFIPICSEMKIPADSSCAGNGVRCEETAWRRTDVDGDGDNFPSDVRALRYLLAGNASPSSSLFLVGFLLEFLRRIWLLEPFVEELWEQRGEGEGRALASLAAALEAALIVPAIPRIGEDEPPPSWDFVLTPKGHLAEGKHNCTSFDSMEDEKPLRLVQELEDDSQEQDDVVLLEDQRNSREEETDVVLLGDQRNPRDKETQAEDSRIVTEEQRRQALIAKRRQKKKITRLVRIQEWRA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0069110 | OsLiXu_Ung0069110.01 | ChrUN-Ctg519 | 474035 | 481543 | - | NAM | ||
| CDS seq | atgaacgactcacccttcatcccgatttgcagcgaaatgaagatacctgcagacagtagttgtgcaggcaacggcgtgcggtgcgaggagacggcgtggcggcgcactgacgttgacggcgacggcgacaacttcccatccgacgtccgcgctctccgctaccttctcgccggtaacgcatcaccgtcgtcttccttgttcctggtaggattcttgctagagttcttgcggcggatttggttgctggagcccttcgtggaggagctctgggagcagaggggggagggggaggggcgagcgctggcttcgctcgccgccgcgctcgaagcggcactcattgtaccagcaattcctagaattggtgaagacgagccgcctccttcctgggactttgttttgactccgaaaggccatcttgctgagggaaaacacaactgcacctcctttgattcaatggaagatgagaaacccctgaggctagtacaggaattggaagatgatagtcaagagcaagatgatgttgtgctgctcgaagaccaaagaaactcaagagaggaagaaactgatgttgtgctgcttggagaccaaagaaacccgagagacaaagaaactcaagctgaggattcaagaattgttactgaagagcaaagaagacaggctttaatagcaaagaggagacaaaaaaAgaagataacaagactagtaagaattcaagagtggagagcatga
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| Protein seq | MNDSPFIPICSEMKIPADSSCAGNGVRCEETAWRRTDVDGDGDNFPSDVRALRYLLAGNASPSSSLFLVGFLLEFLRRIWLLEPFVEELWEQRGEGEGRALASLAAALEAALIVPAIPRIGEDEPPPSWDFVLTPKGHLAEGKHNCTSFDSMEDEKPLRLVQELEDDSQEQDDVVLLEDQRNSREEETDVVLLGDQRNPRDKETQAEDSRIVTEEQRRQALIAKRRQKKKITRLVRIQEWRA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0069110 | OsLiXu_Ung0069110.02 | ChrUN-Ctg519 | 474120 | 479026 | - | IsoSeq | ||
| CDS seq | cggctggtgacacgagaggcaacggcgtgcggtgcgaggagacggcgtggcggcgcactgacgttgacggcgacggcgacaacttcccatccgacgtccgcgctctccgctaccttctcgccgattgtaccagcaattcctagaattggtgaagacgagccgcctccttcctgggactttgttttgactccgaaagctatggttggaagaggttcaccaaaactcagtatgattccaaagggatctcctaagtttggtaggatgctatctgcagcaagtactaggatgaagacagtctctcctcaaagcatacttgctaagaagactgcaagctctccaaaaggcaaccaagtcaagcagagagcaatttggaacgcggagttggagaagtcacttgttgaaatccttttcgagtacaaagtcaatggttgtagaggagataatggctggaccactaaaggttggaatagaatggtgaaggaattccacgcagggaacaaatgcgtatcattcaccaaaaatcaagttcaagaggagggtcaactgaaaagagattacaagatgttgaaagcggtcagacaacaaagcgggtcttcttggaacgagaagagatgcatggtcgagggatcgccagctatgtggcaaaacatgcaaattataagtggatttgtgatcaatatcttcctttgc
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| Protein seq | RLVTREATACGARRRRGGALTLTATATTSHPTSALSATFSPIVPAIPRIGEDEPPPSWDFVLTPKAMVGRGSPKLSMIPKGSPKFGRMLSAASTRMKTVSPQSILAKKTASSPKGNQVKQRAIWNAELEKSLVEILFEYKVNGCRGDNGWTTKGWNRMVKEFHAGNKCVSFTKNQVQEEGQLKRDYKMLKAVRQQSGSSWNEKRCMVEGSPAMWQNMQIISGFVINIFLC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | ChrUN-Ctg519 | 477833 | 478904 | - | OsLiXu_Ung0069110.01 | OsLiXu_Ung0069110.02,OsLiXu_Ung0069110.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.220462 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0427500 | SBH | 7.892547 | 5.814742 | 4.886111 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0427500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0205200 | SBH | 6.5635355 | 13.103808 | 11.153189 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0216600 | SBH | 6.8086035 | 19.53811 | 11.272805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012100 | RBH | 1.243290 | 1.110676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011701 | RBH | 1.376333 | 0.0 | 0.511009 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011870 | RBH | 3.589279 | 23.878914 | 9.338849 |
