Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0427500 | OGI:11039150 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:13632428-13637346 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGACCCAAAGTGCTAATATCATGTTTAAACATGAAAATGGTCACTAGATCCAAAAAATAAATTACAATTACACCCAAAGTGCATAAGTCCAAAGCATAATTTTGTAACCAGTTTGAAAACATAAATATTCTATATTGTCAGAGCAGCAAATAAATCCTCTTGTACTCAGACCATGTCCTTCTCCTATGGCAGTCTAGTAGCTTTGAGTATTGACCTTGGATCCATTCTGTCACCCTGGCGACCTTGGACCATGTACTTCCATTGTTTTCCTTCATCAAATGTGTCAACTGTCAAGAAAATTAAAGAACAGTAAAATGAGTAAAGAACAGTATTAGCTTACATGATCAGTAAAATGAGTAAAGAACAATATATGTTCAGGATGGTGGTTTACATGATTAGTTTCAGCATTAGCTTCAGTAAAGAACAGTAAAATGAGCTCAAACACATAACATAAGAAAAGATGACTCACAAAAGAAATCTTGATAGCATACAGATAAATCTTAGGACCACAGTGGCAACTAATATGGCATCATTAGTTGCCAAACCAATGATATTATATGGTTGAGAATGTCTATCTCCAATTGTTAATTTGTTAACACAAGCTCTAAATACACAGACCTTTCTTATGTAATAAAAGATGCAGCCAATCTAAGTCCCAACCCCCTTTGTCCATCCCATTCTCTACTCTATTCCCATTCTCAAGTCTCAATCCTAAGGCCCTAACTAAACAAGGAATTGAAGTGAAATTTAAATCGCCGACTCACTATCAAACTAAACAAATATGAATATAATTTCAAGTAGAAAACAAGGACGAGAACTAACCTTTGGTGATGCTAGGCCATTTCACTTCTCAGCTAAATTAAAGCAGACTCTAAGTCATCTTCGCAAGCACACATAAAGACTTCTCTATTTGCTGGGGTCTTAAGAACTGCATAATCCTTTGCCTTCTCTTGTTTGGTAACATCCATTGAGCTCAATAAATACACACTTGACAAAATAATCTGTTGCTTGTGAACATACCTTCTCTCTAGCTGCAACTTCTTCCTCGGCTTGTTTACTCCTCATCTCAAGGTATCGCTCCATCATGCTCTCCACTCTTGAATTCTTACTAGTCTTGTTATCTTCTTTTTTTGTCTCCTCTTTGCTATTAAAGCCTGTCTTCTTTGCTCTTCAGTAACAATTCTTGAATCCTCAGCTTGAGTTTCTTTGTCTCTCGGGTTTCTTTGGTCTCCAAGCAGCACAACATCAGTTTCTTCCTCTCTTGAGTTTCTTTGGTCTTCGAGCAGCACAACATCATCTTGCTCTTGACTATCATCTTCCAATTCCTGTACTAGCCTCAGGGGTTTCTCATCTTCCATTGAATCAAAGGAGGTGCAGTTGTGTTTTCCCTCAGCAAGATGGCCTGTGTAAGAACAAGGAAACAGTACACACTTTAAATTGTAGATAAGTAGCAATTTTTCTACCAAGTTACTTATATCCAAACAAAATATTCCTAATGAGTCACTTATTAATTTGGACAAAGAGAACTCATTAATTTGGACAGCAAGATCAAAACTTACCGTCATATAGCTCACCAAGTGCATCATACAAGGGAAAGCTGGCCTTGTTGTTGCGAAACTTTTTGATCTTTGGGAATGTCTACACATGCAAAAGCATAACCACAAATCATTGTAAGGCATCAAAGAAATCACAAATCACATGCAAAGGAAGATATTGATCACAAATCCACTTATAATTTGCAAGTTTTGCCACATAGCTGGCGATCCCTCGACCATGCATCTCTTCTCGTTCCAAGAAGACCCGCTTTGTTGTCTGACCGCTTTCAACATCTTGTAATCTCTTTTCAGTTGACCCTCCTCTTGAACTTGATTTTTGGTGAATGATACGCATTTGTTCCCTGCGTGGAATTCCTTCACCATTCTATTCCAACCTTTAGTGGTCCAGCCATTATCTCCTCTACAACCATTGACTTTGTACTCGAAAAGGATTTCAACAAGTGACTTCTCCAACTCCGCGTTCCAAATTGCTCTCTGCTTGACTTGGTTGCCTAAAAGGAATCATCTTTAGAATCATTTACAGACATAATAGATGTACATTGTGTTGAGTATTGAGAAACCATGAACAAACAATAAATACCATACCTTTTGGAGAGCTTGCAGTCTTCTTAGCAAGTATGCTTTGAGGAGAGACTGTCTTCATCCTAGTACTTGCTGCAGATAGCATCCTACCAAACTTAGGAGATCCCTTTGGAATCATACTGAGTTTTGGTGAACCTCTTCCAACCATAGCTGTCATATTATACATAAATTTATTCAACTATTACATGATGACTCATATTATACATAACTTTATTCAATTATTACATGACTCATGACTAATGTCGACTAATGTACATGCTGCTGATACTGGACCCACATCTCTTGAGCAATTGAGTCTCTCAATGCATTGCCCTCTTCACTGCTAGCTATATTGCCTTTGATAACCACTTGGCAAATCAACAAAGTCTGTTGGGTCGATATTATCTGGCTGATCATCTAGCCACAACTCATCTCCTTCCATTTCCCTGATTAGATTGTGAAATATAGCGGTTGCAATGCGTATTTTGACTTGATTCTTCAACTTGTGGAATGTTGCGACTTTAAGAATAGGAAAGCGCTTCTTAAGCACTCCTAGAGTCCTTTTCACATCGTAGTGCATGGCGATCATTAAACAACTCTTTAGGATTTTGTGGTCTTCTATGTCCAGCCCCAAACTCTTTTAAGTGGTATTTGACTCCCCGATATGGTGCTAGAAAAGAAGAGGTGTTTGCGTACCCGCCATCGACAAGATAAGCCTTGCCTGGAGGCACCTCGAATCCTTTGCTCATAGCAGACCTCAACACTCTAGAGTCCGTAGCAGAACCCTCCCATCCACTAGAAACATACGTGATCTTATGGTCAAAATCACAAACAATCATAACATTGATGCTCAGTGTTGACTTCCTATTTCTAAAAGGGGCAGCTTTTTCAGAGGCAATTGAAATAGGAATGTGGGTGCCACCAATGGCACCAAGGCAGTCTTTGAAGAAAGGAAAGAATCTTGGATTTGTGGCAATTTTTGGATGGACTAGATTAGGGTTGGGAGGTTTCAGGAACTCGCGAGCAAGACCTGGCAGAACATGATTGAAGAAGTGGTTTAGGTGGCGGTGAAATGTATCATTGCTATGGTCAAATTGGACCTGGAGATCCTCATAGGAAGAGTTATGGCTGAGCATCTAAAAAAAGAATCCAAGTTTCTCCTCGATCTTGATTCTCGTGTCAAGGACAAGTTCGTTCCTTCGAAGGTAATCAGCCAAATAATTGAAGATCCAGGGTTCCATCCGGAAAGCTACCAAACAATTCTTCACGTGTCCTTGGAGCAACCGACGGACCTCCTCCTCACCCGATTCCTTTGGGCTATGACGTTGTTCCTTTTCCCCTCATCGGTTAGAACCCAAAACAGAAAGGGCAGGGAAAAGAAAGAGCATCATGTCATCGTCCTCTAACACAATCTCTCAAAGTCATATTCATTGGATTACTATATACCAAAATAGCAGGGCAGTCATATATTTATTGAAGAACAGGGCAGCCATATAGAACAGGACAATAGGAGGGAGAAAACTACTGGAATACCTTTCGGAGTCAAAACAAAGTCCCAGGAAGGAGGCGGCTCGTCTTCACCAATTCTAGGAATTGCTGGTACAATCTGAATAAAAGCACAAAGTAACTAGAAATTAGGAAATACAGAGAGTCATCAGATGTGGACACTGTCATCAGATTCTACTAATTGAAATACTTTAACAATGAAGAATGTTCTTGTCAATTGTCAAGGAGATATGATTGAGTTGTACTATTGATTATAGGTCTGCCAAAAAAATAAATGTTTGCGTGCTTCAAGTTTTCAACACAACATTATAGGATAACACAAGCACAGGAATGGGCCACACAAGTACACAATTTACAGATGATTGACATGAGAAATAGGAGATGGGATTACTGCCTGAGCAAAGAAATTTTGGAGCTAGAAAAACTGTTTTCATGCATCAACAACAAAAGCAATCCATATGAGCTATCCTAGCAGCTTAGATCATTCTATCCAGTACTTTGAAGGCATCAACAGCAGAACATGAGTTTGGAACTTAAAATAGACAGGATAAGTTCCTACTGTCCAATATCCTCTGCATTTACATAAGAAATGAACTTACTAAAATCTTTCGAGATGTCTGCAGCTGCAAATTCCAACAAGCATGAGAATCAAAAAAAAAAGGAGAAACTAAAGAAACATGTATTAATTCATCTCACTTGACCATCAATATGAAATTTTAGAACTGTAATATAAGCTAGAAGATATTGTATGGTATTATACAAACATAAGAGCATTTGCTTTTCTTCCTTGCCACTTGTGTACTTATTCAACCTAATATTCGATTTATCAGTAGCCATGCCCAAGAAAGGCAGCCAGGACCACGAATCCTCCCAGAAAGGCAGCCAGGACCACGAATCGAACAAAATCAAGAAATCCACACACACGCATACCAAGGAGATGTTCGGAAATCAAGAAATCAAGAAACCTCATGTTCGGCTCCCCTCGCGGCTGAGCCGGAGCAGCACGAGTGCCGCTTCGAGCGCGGCGGCGAGCGAAGCCAGCGCTCGCCCCTCCCCCTCCCCCCTCTGCTCCCAGAGCTCCTCCACGAAGGGCTCCAGCAACCAAATCCGCCGCAAGAACTATAGCAAGAATCCTACCAGGAACAAGGAAGACGACGGTGATGCGTTACCGGCGAGAAGGTAGCGGAGAGCGCGGACGTCGGATGGGAAGTTGTCGCCGTCGCCGTCAACGTCAGTGCGCCGCCACGCCGTCTCCTCGCACCGCACGCCGTTGCCTCTCGTGTCACCAGCCGCAC
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| CDS seq | GATTCTTGCTATAGTTCTTGCGGCGGATTTGGTTGCTGGAGCCCTTCGTGGAGGAGCTCTGGGAGCAGAGGGGGGAGGGGGAGGGGCGAGCGCTGGCTTCGCTCGCCGCCGCGCTCGAAGCGGCACTCGTGCTGCTCCGGCTCAGCCGCGAGGGGAGCCGAACATGAGATTGTACCAGCAATTCCTAGAATTGGTGAAGACGAGCCGCCTCCTTCCTGGGACTTTGTTTTGACTCCGAAAGCTATGGTTGGAAGAGGTTCACCAAAACTCAGTATGATTCCAAAGGGATCTCCTAAGTTTGGTAGGATGCTATCTGCAGCAAGTACTAGGATGAAGACAGTCTCTCCTCAAAGCATACTTGCTAAGAAGACTGCAAGCTCTCCAAAAGGCAACCAAGTCAAGCAGAGAGCAATTTGGAACGCGGAGTTGGAGAAGTCACTTGTTGAAATCCTTTTCGAGTACAAAGTCAATGGTTGTAGAGGAGATAATGGCTGGACCACTAAAGGTTGGAATAGAATGGTGAAGGAATTCCACGCAGGGAACAAATGCGTATCATTCACCAAAAATCAAGTTCAAGAGGAGGGTCAACTGAAAAGAGATTACAAGATGTTGAAAGCGGTCAGACAACAAAGCGGGTCTTCTTGGAACGAGAAGAGATGCATGGTCGAGGGATCGCCAGCTATGTGGCAAAACTTGCAAATTATAAGTGGATTTGTGATCAATATCTTCCTTTGCATGTGA
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| Protein seq | DSCYSSCGGFGCWSPSWRSSGSRGGRGRGERWLRSPPRSKRHSCCSGSAARGAEHEIVPAIPRIGEDEPPPSWDFVLTPKAMVGRGSPKLSMIPKGSPKFGRMLSAASTRMKTVSPQSILAKKTASSPKGNQVKQRAIWNAELEKSLVEILFEYKVNGCRGDNGWTTKGWNRMVKEFHAGNKCVSFTKNQVQEEGQLKRDYKMLKAVRQQSGSSWNEKRCMVEGSPAMWQNLQIISGFVINIFLCM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0427500 | OsNip_11t0427500-02 | Chr11 | 13632428 | 13637209 | - | RAP2018-11-26 | ||
| CDS seq | GATTCTTGCTATAGTTCTTGCGGCGGATTTGGTTGCTGGAGCCCTTCGTGGAGGAGCTCTGGGAGCAGAGGGGGGAGGGGGAGGGGCGAGCGCTGGCTTCGCTCGCCGCCGCGCTCGAAGCGGCACTCGTGCTGCTCCGGCTCAGCCGCGAGGGGAGCCGAACATGAGATTGTACCAGCAATTCCTAGAATTGGTGAAGACGAGCCGCCTCCTTCCTGGGACTTTGTTTTGACTCCGAAAGCTATGGTTGGAAGAGGTTCACCAAAACTCAGTATGATTCCAAAGGGATCTCCTAAGTTTGGTAGGATGCTATCTGCAGCAAGTACTAGGATGAAGACAGTCTCTCCTCAAAGCATACTTGCTAAGAAGACTGCAAGCTCTCCAAAAGGCAACCAAGTCAAGCAGAGAGCAATTTGGAACGCGGAGTTGGAGAAGTCACTTGTTGAAATCCTTTTCGAGTACAAAGTCAATGGTTGTAGAGGAGATAATGGCTGGACCACTAAAGGTTGGAATAGAATGGTGAAGGAATTCCACGCAGGGAACAAATGCGTATCATTCACCAAAAATCAAGTTCAAGAGGAGGGTCAACTGAAAAGAGATTACAAGATGTTGAAAGCGGTCAGACAACAAAGCGGGTCTTCTTGGAACGAGAAGAGATGCATGGTCGAGGGATCGCCAGCTATGTGGCAAAACTTGCAAATTATAAGTGGATTTGTGATCAATATCTTCCTTTGCATGTGA
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| Protein seq | DSCYSSCGGFGCWSPSWRSSGSRGGRGRGERWLRSPPRSKRHSCCSGSAARGAEHEIVPAIPRIGEDEPPPSWDFVLTPKAMVGRGSPKLSMIPKGSPKFGRMLSAASTRMKTVSPQSILAKKTASSPKGNQVKQRAIWNAELEKSLVEILFEYKVNGCRGDNGWTTKGWNRMVKEFHAGNKCVSFTKNQVQEEGQLKRDYKMLKAVRQQSGSSWNEKRCMVEGSPAMWQNLQIISGFVINIFLCM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0427500 | OsNip_11t0427500-01 | Chr11 | 13632455 | 13637346 | - | RAP2018-11-26 | ||
| CDS seq | GTGCGGCTGGTGACACGAGAGGCAACGGCGTGCGGTGCGAGGAGACGGCGTGGCGGCGCACTGACGTTGACGGCGACGGCGACAACTTCCCATCCGACGTCCGCGCTCTCCGCTACCTTCTCGCCGATTGTACCAGCAATTCCTAGAATTGGTGAAGACGAGCCGCCTCCTTCCTGGGACTTTGTTTTGACTCCGAAAGCTATGGTTGGAAGAGGTTCACCAAAACTCAGTATGATTCCAAAGGGATCTCCTAAGTTTGGTAGGATGCTATCTGCAGCAAGTACTAGGATGAAGACAGTCTCTCCTCAAAGCATACTTGCTAAGAAGACTGCAAGCTCTCCAAAAGGCAACCAAGTCAAGCAGAGAGCAATTTGGAACGCGGAGTTGGAGAAGTCACTTGTTGAAATCCTTTTCGAGTACAAAGTCAATGGTTGTAGAGGAGATAATGGCTGGACCACTAAAGGTTGGAATAGAATGGTGAAGGAATTCCACGCAGGGAACAAATGCGTATCATTCACCAAAAATCAAGTTCAAGAGGAGGGTCAACTGAAAAGAGATTACAAGATGTTGAAAGCGGTCAGACAACAAAGCGGGTCTTCTTGGAACGAGAAGAGATGCATGGTCGAGGGATCGCCAGCTATGTGGCAAAACTTGCAAATTATAAGTGGATTTGTGATCAATATCTTCCTTTGCATGTGA
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| Protein seq | VRLVTREATACGARRRRGGALTLTATATTSHPTSALSATFSPIVPAIPRIGEDEPPPSWDFVLTPKAMVGRGSPKLSMIPKGSPKFGRMLSAASTRMKTVSPQSILAKKTASSPKGNQVKQRAIWNAELEKSLVEILFEYKVNGCRGDNGWTTKGWNRMVKEFHAGNKCVSFTKNQVQEEGQLKRDYKMLKAVRQQSGSSWNEKRCMVEGSPAMWQNLQIISGFVINIFLCM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0427500 | OsNip_11t0427500-03 | Chr11 | 13634688 | 13635379 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCGCCATGCACTACGATGTGAAAAGGACTCTAGGAGTGCTTAAGAAGCGCTTTCCTATTCTTAAAGTCGCAACATTCCACAAGTTGAAGAATCAAGTCAAAATACGCATTGCAACCGCTATATTTCACAATCTAATCAGGGAAATGGAAGGAGATGAGTTGTGGCTAGATGATCAGCCAGATAATATCGACCCAACAGACTTTGTTGATTTGCCAAGTGGTTATCAAAGGCAATATAGCTAG
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| Protein seq | MIAMHYDVKRTLGVLKKRFPILKVATFHKLKNQVKIRIATAIFHNLIREMEGDELWLDDQPDNIDPTDFVDLPSGYQRQYS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr11 | 13636151 | 13637346 | - | OsNip_11t0427500-02 | OsNip_11t0427500-02,OsNip_11t0427500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.892547 | 5.814742 | 4.886111 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24050 | RBH | 4.042773 | 2.954126 | 1.143169 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0427500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012030 | RBH | 2.132478 | 6.605154 | 11.756510 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012050 | RBH | 1.154949 | 4.649098 | 3.939842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011980 | RBH | 5.718763 | 2.299055 | 13.582503 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011720 | RBH | 0.724130 | 0.162829 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0205200 | RBH | 6.5635355 | 13.103808 | 11.153189 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011941 | RBH | 0.532369 | 0.445549 | 2.459295 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0216600 | RBH | 6.8086035 | 19.53811 | 11.272805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012100 | RBH | 1.243290 | 1.110676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012210 | RBH | 2.118408 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011860 | RBH | 23.790518 | 40.113155 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011701 | RBH | 1.376333 | 0.0 | 0.511009 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011981 | RBH | 0.851383 | 8.553144 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011880 | RBH | 2.922603 | 3.387689 | 5.359387 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011870 | RBH | 3.589279 | 23.878914 | 9.338849 |
