Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0065140 | OGI:99060900 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg484:275880-282833 | ||||||||
| Gene Symbol | RPR1, RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1 | ||||||||||
| DNA seq | ctctgctcttcgagatactctcgatctgcacctcaggttagattggttaatcttgctttgtatcaagcagttcgtagctgtaatcagcttttacttttgtacttatgtctgctggaaaattctgccttttcttcctgtgaattttgcctcgatgaggtgaggaactgttaagtctctttgcttgaaaatattgggaaattatttctgaaatttcaccctgagcgagcatatcacttcatacactacatgtttcccgtatttttcaccttttattatcttattgttggttatctgctgcaaggatatcttaagctaggtgccaagcaagtgttgcatctccatactttgttcctgctgaaatgattagtactaatagtttccatgggcattcaaaccataatccaaagaaatgttcatatggtcaatcaatcctgacatatacgttgctatatagtagttgaattgttgctttacaaaataaccagtgtttctatagaggcaaaataattccttagtagaaagatggaaactggaaaggctgaaaacattagattgagtacacttgaattatcacctgccatagaaaacataggtgatcgccaagattcatcttctgagatatactgcgtaacgtgaatagattgtattgagcctcaggggatcttcaggggaccggtgtatataggaatacatgggaaagagataaggaaggattacatatatgtaaaaaatccacacaaatcaatcctatcttaatatgactttaactaccatacactctatcgccttcaaggctgatagctgggtatagctggtacttcaaaatattaagcagtaggtctcaggctaaatacaaatatgaaaactacaaacaaatggcacataaaaacacggaccctcagtgacagtaaatgttggagaccctgtaaacggaacagttctcaggttatagattttacgattacgattacaattgcgtgatctgccagcgagtccgagcggctgcctagggtcgtcgggtcttgttatagatggccaaaaggcccgctcggcccggcccggcccaggcatggcccaccatccatcgggccggcacggcccgatcggcactttgtgctgggccgtgccggcccatgggctgcgcctcccgcccaggcacggctcaccagccgtcaggccgtgccgggccgacacgaaggcgtgggtggctcattgtgcctttttctaaataagtctattttccgtccctcctctttgggctgaatagcgaaaataagtctatttttcgtccctcctctttgggctgtgacatatatatagtgaaaataagtctattttccatccctcctctttgggctgacatatatatagctaaaataagtctattttacatccttattctttcgaccgtggcatataatatgtctatttttactccctattgtttatgtgtcgggcctggcctgcggcccatcgtgccgtgccggtggagaggcccaggcacggcctggtggtcgggccgggccggcacgggcccgacccttgacgagccgtgtcgtgcttgggccgggccaaaacgccgtgccgtgggccgggcctcgggccttttggctatctataggtcttgtatccacccctggttcatagcgtcgcaccaaagtatttggcgtcaggcagccttgtaggatggtcaatgaagccatagaggttctacatgccaccccacatgacgccaagtcttgcagcactaggttacatataaactgcgccaaaatttcatggctctatgtttaaggtatgtttcagagaagttttatcagggggttaatttataataaaactagtaatatgcccgtactaacattacgggggaacttataatgtaaataaaagagtgaaataaatggtcggtctctaaacttgtgtgctggtgtcacttagatccgtgaacttgaaaattgcacgtttagatatgtgaacttggtttaatgtatcacccctagtccaatcgtcctttgattgcattcggccgctaatgtggcacaccacacagataacccttttgcgtctcagccccctccgcatataccttctcaagcctggccgttagggtttcgacggtggagttagtggcaggaggcggtgaggtagcggttgtggcggccttggcggcgagattagtggcaagagacggtgccgtgtagcgaggttagcggtggcgtgacgtgtagaggggaccaagggcaaaagtgttacttgcgtgacgtgtcacgttgacggtcaaacgtggtcaaagggcaattgaaagggatggtacattaaaccaagttcatgaatcttgacatgtaatttttaagtttagggatctaagtaacaccgccctacaagtttaagaaccggacatatattttactctaaataaaataactaaaaatgataatttaaagttcacgtaagaaagaaactttctagatctttgagcaaagctatacgtccattaaggaacgttatgagatgagatctacataatggttgtgcttttcatgatgtaacattttctcggattcagtcaactttgttgcacggtgtaaagcatcaaccagatcaacactccaagaatttaccctgaaagaaccactaaaagacgggaaactcatacataattagtgggcttgtgatggcagtttgtgtcactcctctggcattatccaactcatcatttttcatatggtatcacattcataacatccctcgcaacatttacaataacaatcagatacataataaaatgcagtattttcattAaaacaatatatgatggtcaataaggacgaggcttgtaatctactttcattgcttcctcttgacttccactgtgtttctttctggattgacaatttgtacaaggacaaccttctctgatatttggattcctatctgagaagtatctccaacctaagcagttcaaaaccaaaacatgcatagtgcttggacttgattaaggtaacaaatctgatatgatcctgttcgacagggcattcatcatttgatcctgtacacttacaatatcatgtcaatagatatttctaaaatgaccagcagacaattgcaagcttataagcttgaacaaaatttttataacttccataaccaataaatagattaccaggggtttttcatcagcaagcgatacaatctttggatgttaaccagaaaccagtccattatccaaagtctaacctttattttttatgcaacataacaaaaagagtataagatattagtccttgtacaatcatcatatttaataaaaaaaagtgtccccctttccataccaatgaggttcttgttagagcaaatatctgaaatttagagctaacacatgtcaattcagaaatgtgcAaaatactaaccgcttgttttccagtaactgaaaaaacatccagaataatcctgattcaccttgctatgaagatttttcttgcaaaagatagataataatttcatgagaaacaaatttcccctggttaacagtttcaggtttcaacgagctgcaaaaagaaggggatccaaaatctgttattatagtaaaatttgcacacctattaatacaagtgttattcaaaactcaattgaagtgtgatggattggggatataacctcaggagttacgtgtgattcaaaagtcaatttaagatttacttccaggcctcgaatataatattcagacctcaatttcagtcacacttccagtcttcaaattcatttttttattatggtgtaacatatatgctaggagtaaaatctgtcacggttaaatgcatggtaatggtaaggtaaagtgacaatgtatatcagtcatatagcagttctggaagcatataccattaagtaagaagaatagaatgacctaacttctcatatagtcatatgatcgctttcccgtatggcactccttaagaatactaaccagatattgttgatattgcgattaaccttacaaccaattgagttacttagaaatctgtccagaccagtctaatggaaaatataatgcactaaatagagcatgggaattgggaaagtgtcaagtatggcaatatgttcagattaaccaaatgggaaacaacaaggggtctgaagaacggaagcaggtggttggtgcgacaatgggtaggttctgctcctgctagatgatggtgatggatacacaaaataaatgtggaaaagttagagtgcaaatcattcatgattaaaatcaaaatcagtatcttgaaaattcacttagaaaaaatccagaactgatatcgccaaattcagaaaaattcagaacttgaaagaacagggatgccctgatttggtgtaaatacggtcaaattgttgcttgcacaaatttattgactgcaattaacatataagagatcattatactgataatgacctagctcgtcgggtcttgtatccacccctggttcatagcgttgcaccaaagtatttgtcgtcaggcggccttgtaggatggtcaatggagccatagaggttctacatgccaccccacatgacgccaagtcttgcagcaccaggctacatataaactgcgccaaaatttcatggctctatgcttaaggaatgtttcagaaaagttttatcagggggttaatttataataaaatatgtaaaaattaccctcatgtaacagggtgggcacatagaggatgaaaataaattaaaactcaagataatgtaagggatgaaacgaaactgagtggcacataagtatttattttcatagcctttttgctaattaactcctacaaggactgatgccctgtgttctgttagtttgctttagtttgttactgcattatgtaatacaatctgtgcctttgttcagcacacatggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagAaaaaaattgaaaatgttgcaacgcggaaaaaacggtggcagcagcagtcccaccacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgagcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgAaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacAaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatgttggaagttcttggaaatgatgagctaggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagaggagaagttcggctctgcaaataattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaaacagtcagcgtttcgctatttcattggaatgcaagcacccaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttga
More
|
||||||||||
| CDS seq | atggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagAaaaaaattgaaaatgttgcaacgcggaaaaaacggtggcagcagcagtcccaccacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgagcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgAaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacAaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatgttggaagttcttggaaatgatgagctaggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagaggagaagttcggctctgcaaataattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaaacagtcagcgtttcgctatttcattggaatgcaagcacccaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttga
More
|
||||||||||
| Protein seq | MEAVILAVSKIGSVLVEEATKAAITKLSEKATNLKELPSKVEEIEDELKTMNNVIKQMSTTNLTDEVVKGWIAEVRGLAHRVQDIMDKYSYHALKLEEENSVKKLFTTPNYVTVFSEIAEEISKIEKKIENVATRKKRWQQQSHHTPNPLADIERKRSQDCLLAPDDLVGIEDNRKLLTDWLYSKEQDNTIITVSGMGGLGKTTLVNNVYEREKNNFEVSTWIVVSQSYDVVDLLRKLLRKIVPDDQTQLLDLDAHDLKIRIKEKLKDENFLIVLDDVWNREAYTQIADAFPNFQASRIIITTRQGDVATLAQSARQLKLNPLEHTDALELFCRRAFYRNCKCPQNLEKLTNDIVVRCQGLPLAIVSIGGLLSSLPPENQVWNETYKQLRSELTKNNNVQAILNMSYHDLPGDLRNCFLYCSLFPEDHELSRETVVRLWVAEGFAVQNEENTPEEVAEKYLRELIQRNMLEVLGNDELGRVSTFKMHDLVRDLALSIAKEEKFGSANNYDTMERMDKEVRRLSSYGWKGKPVLQVKFMRLRTLVALGMKTPSRHMLSSILSESNYLTVLELQDSEITEVPASIGELFNLRYIGLQRTRVKSLPESIGKLSSLLTLNIKQTKIQKLPQSIVKIKKLRHLLADRYEDEKQSAFRYFIGMQAPKSYPTWKNSRPLRLWKPAKNWLSS |
||||||||||
| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0065140 | OsLiXu_Ung0065140.01 | ChrUN-Ctg484 | 275880 | 282833 | + | NAM | ||
| CDS seq | atggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagAaaaaaattgaaaatgttgcaacgcggaaaaaacggtggcagcagcagtcccaccacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgagcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgAaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacAaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatgttggaagttcttggaaatgatgagctaggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagaggagaagttcggctctgcaaataattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaaacagtcagcgtttcgctatttcattggaatgcaagcacccaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttga
More
|
|||||||
| Protein seq | MEAVILAVSKIGSVLVEEATKAAITKLSEKATNLKELPSKVEEIEDELKTMNNVIKQMSTTNLTDEVVKGWIAEVRGLAHRVQDIMDKYSYHALKLEEENSVKKLFTTPNYVTVFSEIAEEISKIEKKIENVATRKKRWQQQSHHTPNPLADIERKRSQDCLLAPDDLVGIEDNRKLLTDWLYSKEQDNTIITVSGMGGLGKTTLVNNVYEREKNNFEVSTWIVVSQSYDVVDLLRKLLRKIVPDDQTQLLDLDAHDLKIRIKEKLKDENFLIVLDDVWNREAYTQIADAFPNFQASRIIITTRQGDVATLAQSARQLKLNPLEHTDALELFCRRAFYRNCKCPQNLEKLTNDIVVRCQGLPLAIVSIGGLLSSLPPENQVWNETYKQLRSELTKNNNVQAILNMSYHDLPGDLRNCFLYCSLFPEDHELSRETVVRLWVAEGFAVQNEENTPEEVAEKYLRELIQRNMLEVLGNDELGRVSTFKMHDLVRDLALSIAKEEKFGSANNYDTMERMDKEVRRLSSYGWKGKPVLQVKFMRLRTLVALGMKTPSRHMLSSILSESNYLTVLELQDSEITEVPASIGELFNLRYIGLQRTRVKSLPESIGKLSSLLTLNIKQTKIQKLPQSIVKIKKLRHLLADRYEDEKQSAFRYFIGMQAPKSYPTWKNSRPLRLWKPAKNWLSS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229500 | SBH | 1.400738 | 1.862948 | 0.773398 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12340 | SBH | 1.142544 | 1.231379 | 0.179194 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0229500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008140 | SBH | 0.615808 | 4.248855 | 4.467988 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | SBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007980 | SBH | 0.114973 | 0.0 | 0.751325 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007890 | SBH | 0.093749 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007920 | SBH | 2.486020 | 5.435768 | 3.408259 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105900 | SBH | 0.109065 | 0.603869 | 0.012481 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007960 | SBH | 0.426523 | 0.831860 | 0.573374 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111500 | SBH | 5.456746 | 174.322876 | 2.407701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008020 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008090 | SBH | 0.094717 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008070 | SBH | 0.000000 | 3.755952 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007960 | RBH | 0.033460 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008040 | SBH | 0.041712 | 4.415436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008100 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007910 | SBH | 0.162102 | 7.456972 | 4.811376 |
