Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0064380 | OGI:11014800 | 5/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg481:599971-602058 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggacgatgatacaacaacttggacatcacctgatggagcagcagcggcagcatcagcttggtttctttcagcttctattctttggcttgcaatcctcaccctctcctctttggatagccgaagctgcaccctctgctgccgctctgcgaacgtctccaatccggcgtgccacatcaccagcgagacaacagtcaggtactcccctcctgtgccgaggcttttggcatgcaggtagcccctgcatctaccagtagagaagcagagcatctcgatccatacacctttcattacttcccacatcttcttctcatcacccaattgcatcagctcttttgcgagaatccaggcgtcgcgagtaaagccgaattctgcagactctgcctttcttattatcttttgagtgagttctttgtcatccaacaacgatacatcgtcaccttggaggatgtcctcgagttctttgtaggcagttgtgaacagcatccttctgctgctgggcaacaacatctcaagattatcaaatagaagatgcatcatgtagttggagatttgtcgacactcatctgaatcaggagatgcgtccttatgatgaaagcaaaaatccgtggccagatgccagagaatgatgctctcatcgaagagcttctctatattgcttcggataacggtatcttcatattcattgcgctcaagtgtccaatggcccctggtatcactgaatttccaataactctgaacatccattatgcagttcagccatccatctttagcatgggcagaaagtaagtttgtaatgtcctcaaacgagtagcaaggctctagatgaaaatattggtcaagcaagcccttgcattgtaggcaatccaagatggccataaattttttatgtcttttcttagaggctaagaacccaataagattgtgttggaaaaccaagttggacaatccattgacagagtaatatccccatgttatgcaggtggcaaactccagaaagtaggagacgtataacaatataaatgtaactttgatgtcaataacactgtaaggttctttctggctactatggaagaggccaatgggcacgattggcagtgttacggtaattaagaatacaaagggggagaaaacgtcaccaaattcaggttcagatctgttttgatctccgaaatccaaaaccttgctataaataagatcaaatgtatcagacagccctttacgtaatgcttcatagactctgttggcatcgagcaaacagaaggattccaatttagtaagacgattatgataggagcatgcaaagtccacaaatagcttatcaggtatagagagatccttctctaaccgtccaaaatcctcatgatagattgtcgggttagagttagagctgctgcttcttgcttctttattgcgttgcataaaatcctttgctttttggatgtattcttcatgctctacttccctatcgatagatttggtcatgggtgaaggatggaaggtgctgactaagctagtaaagctagccctcatgagagcccttggcttgtcgaagcatttggaaaccccaataataaaaagcagtattgctgcagctagtaacctcttgtcggctgagggagaccaagatttggtaaacacatagatagctactatgacctgggacagtggagttatcgaatgttgttgatttgacttagagattttggttcactagtacatcaattagcataacaccgtaaacaagggaaggtatggcactgcataaacctaagggctcatttagcacataggaaaaaaacacaggaataagaaaaagataggaattgaggtagaaaagtatagttgatatttaagaattataaaatgcagcaactgtgtgaaactggaagcaaacctttgatctcgccgataggggcaagcttgctgcagccttgatcttatcgcgctccaccagctgccactcaaacctaggccacaactcgtcacagcagccatggccaggccaagcttggcagcgtccccgcgagtcgcagccctccagccatgccgaggatgacaccactgaccgatgcagccagtctccat
More
|
||||||||||
| CDS seq | atggagactggctgcatcggtcagtggtgtcatcctcggcatggctggagggctgcgactcgcggggacgctgccaagcttggcctggccatggctgctgtgacgagttgtggcctagccgacaagaggttactagctgcagcaatactgctttttattattggggtttccaaatgcttcgacaagccaagggctctcatgagggctagctttactagcttagtcagcaccttccatccttcacccatgaccaaatctatcgatagggaagtagagcatgaagaatacatccaaaaagcaaaggattttatgcaacgcaataaagaagcaagaagcagcagctctaactctaacccgacaatctatcatgaggattttggacggttagagaaggatctctctatacctgataagctatttgtggactttgcatgctcctatcataatcgtcttactaaattggaatccttctgtttgctcgatgccaacagagtctatgaagcattacgtaaagggctgtctgatacatttgatcttatttatagcaaggttttggatttcggagatcaaaacagatctgaacctgaatttggtgacgttttctccccctttgtattcttaattaccgtaacactgccaatcgtgcccattggcctcttccatagtagccagaaagaaccttacagtgttattgacatcaaagttacatttatattgttatacgtctcctactttctggagtttgccacctgcataacatggggatattactctgtcaatggattgtccaacttggttttccaacacaatcttattgggttcttagcctctaagaaaagacataaaaaatttatggccatcttggattgcctacaatgcaagggcttgcttgaccaatattttcatctagagccttgctactcgtttgaggacattacaaacttactttctgcccatgctaaagatggatggctgaactgcataatggatgttcagagttattggaaattcagtgataccaggggccattggacacttgagcgcaatgaatatgaagataccgttatccgaagcaatatagagaagctcttcgatgagagcatcattctctggcatctggccacggatttttgctttcatcataaggacgcatctcctgattcagatgagtgtcgacaaatctccaactacatgatgcatcttctatttgataatcttgagatgttgttgcccagcagcagaaggatgctgttcacaactgcctacaaagaactcgaggacatcctccaaggtgacgatgtatcgttgttggatgacaaagaactcactcaaaagataataagaaaggcagagtctgcagaattcggctttactcgcgacgcctggattctcgcaaaagagctgatgcaattgggtgatgagaagaagatgtgggaagtaatgaaaggtgtatggatcgagatgctctgcttctctactggtagatgcaggggctacctgcatgccaaaagcctcggcacaggaggggagtacctgactgttgtctcgctggtgatgtggcacgccggattggagacgttcgcagagcggcagcagagggtgcagcttcggctatccaaagaggagagggtgaggattgcaagccaaagaatagaagctgaaagaaaccaagctgatgctgccgctgctgctccatcaggtgatgtccaagttgttgtatcatcgtcctag
More
|
||||||||||
| Protein seq | METGCIGQWCHPRHGWRAATRGDAAKLGLAMAAVTSCGLADKRLLAAAILLFIIGVSKCFDKPRALMRASFTSLVSTFHPSPMTKSIDREVEHEEYIQKAKDFMQRNKEARSSSSNSNPTIYHEDFGRLEKDLSIPDKLFVDFACSYHNRLTKLESFCLLDANRVYEALRKGLSDTFDLIYSKVLDFGDQNRSEPEFGDVFSPFVFLITVTLPIVPIGLFHSSQKEPYSVIDIKVTFILLYVSYFLEFATCITWGYYSVNGLSNLVFQHNLIGFLASKKRHKKFMAILDCLQCKGLLDQYFHLEPCYSFEDITNLLSAHAKDGWLNCIMDVQSYWKFSDTRGHWTLERNEYEDTVIRSNIEKLFDESIILWHLATDFCFHHKDASPDSDECRQISNYMMHLLFDNLEMLLPSSRRMLFTTAYKELEDILQGDDVSLLDDKELTQKIIRKAESAEFGFTRDAWILAKELMQLGDEKKMWEVMKGVWIEMLCFSTGRCRGYLHAKSLGTGGEYLTVVSLVMWHAGLETFAERQQRVQLRLSKEERVRIASQRIEAERNQADAAAAAPSGDVQVVVSSS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0064380 | OsLiXu_Ung0064380.01 | ChrUN-Ctg481 | 599971 | 602058 | - | NAM | ||
| CDS seq | atggagactggctgcatcggtcagtggtgtcatcctcggcatggctggagggctgcgactcgcggggacgctgccaagcttggcctggccatggctgctgtgacgagttgtggcctagccgacaagaggttactagctgcagcaatactgctttttattattggggtttccaaatgcttcgacaagccaagggctctcatgagggctagctttactagcttagtcagcaccttccatccttcacccatgaccaaatctatcgatagggaagtagagcatgaagaatacatccaaaaagcaaaggattttatgcaacgcaataaagaagcaagaagcagcagctctaactctaacccgacaatctatcatgaggattttggacggttagagaaggatctctctatacctgataagctatttgtggactttgcatgctcctatcataatcgtcttactaaattggaatccttctgtttgctcgatgccaacagagtctatgaagcattacgtaaagggctgtctgatacatttgatcttatttatagcaaggttttggatttcggagatcaaaacagatctgaacctgaatttggtgacgttttctccccctttgtattcttaattaccgtaacactgccaatcgtgcccattggcctcttccatagtagccagaaagaaccttacagtgttattgacatcaaagttacatttatattgttatacgtctcctactttctggagtttgccacctgcataacatggggatattactctgtcaatggattgtccaacttggttttccaacacaatcttattgggttcttagcctctaagaaaagacataaaaaatttatggccatcttggattgcctacaatgcaagggcttgcttgaccaatattttcatctagagccttgctactcgtttgaggacattacaaacttactttctgcccatgctaaagatggatggctgaactgcataatggatgttcagagttattggaaattcagtgataccaggggccattggacacttgagcgcaatgaatatgaagataccgttatccgaagcaatatagagaagctcttcgatgagagcatcattctctggcatctggccacggatttttgctttcatcataaggacgcatctcctgattcagatgagtgtcgacaaatctccaactacatgatgcatcttctatttgataatcttgagatgttgttgcccagcagcagaaggatgctgttcacaactgcctacaaagaactcgaggacatcctccaaggtgacgatgtatcgttgttggatgacaaagaactcactcaaaagataataagaaaggcagagtctgcagaattcggctttactcgcgacgcctggattctcgcaaaagagctgatgcaattgggtgatgagaagaagatgtgggaagtaatgaaaggtgtatggatcgagatgctctgcttctctactggtagatgcaggggctacctgcatgccaaaagcctcggcacaggaggggagtacctgactgttgtctcgctggtgatgtggcacgccggattggagacgttcgcagagcggcagcagagggtgcagcttcggctatccaaagaggagagggtgaggattgcaagccaaagaatagaagctgaaagaaaccaagctgatgctgccgctgctgctccatcaggtgatgtccaagttgttgtatcatcgtcctag
More
|
|||||||
| Protein seq | METGCIGQWCHPRHGWRAATRGDAAKLGLAMAAVTSCGLADKRLLAAAILLFIIGVSKCFDKPRALMRASFTSLVSTFHPSPMTKSIDREVEHEEYIQKAKDFMQRNKEARSSSSNSNPTIYHEDFGRLEKDLSIPDKLFVDFACSYHNRLTKLESFCLLDANRVYEALRKGLSDTFDLIYSKVLDFGDQNRSEPEFGDVFSPFVFLITVTLPIVPIGLFHSSQKEPYSVIDIKVTFILLYVSYFLEFATCITWGYYSVNGLSNLVFQHNLIGFLASKKRHKKFMAILDCLQCKGLLDQYFHLEPCYSFEDITNLLSAHAKDGWLNCIMDVQSYWKFSDTRGHWTLERNEYEDTVIRSNIEKLFDESIILWHLATDFCFHHKDASPDSDECRQISNYMMHLLFDNLEMLLPSSRRMLFTTAYKELEDILQGDDVSLLDDKELTQKIIRKAESAEFGFTRDAWILAKELMQLGDEKKMWEVMKGVWIEMLCFSTGRCRGYLHAKSLGTGGEYLTVVSLVMWHAGLETFAERQQRVQLRLSKEERVRIASQRIEAERNQADAAAAAPSGDVQVVVSSS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007200 | SBH | 0.0 | 0.542706 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006990 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092400 | SBH | 0.04573 | 5.6896605 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006980 | SBH | 0.0 | 0.158728 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0099400 | RBH | 0 | 0.0893075 | 0.015486 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007140 | RBH | 0.0 | 0.131823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007130 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007100 | SBH | 0.0 | 2.150704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007160 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007010 | RBH | 0.0 | 1.563471 | 0.0 |
