Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0006990 | OGI:11017230 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:5837617-5840238 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggacgatgatacaacaacttggacctcagctgatgctgcagcatcagcttggtttctttcagcttctattctttgccttgcaatcctgaccctttcctctttggatagccgaagctgcaccctctgctgccgctccgcgaacgtctccaatccggcgtgcgacatgaccagcgagacaacggtgaggtactcccctcccgtgccgaggcttttggcatgtaagtagcccctgcatctaccagcagagaagcagagcatctcgatccatacgcctttgattatttcccacatcttcttctcatcacccaattgcttcagctcttcagcaagaatccaggcatcgcgaataaagccgcattctgcaaactctgcctttccaattatctcttgagtaagttctttttcgtctaaaaatgatacatcatcaccttggaggatgtccttgagttcttcgtaggcagctgtggacaacactcttctgctgctaggcaacatctcaggattatcgaacaaaagatgcatcatgtagttggagatttgttgacacggcttggcacactcatcagattcaagagatgcgtccttatgacgaaagcaaaaatctgtggccagatgccagagaatgatgctctcatcgaagggcttctctatactgcttcggataacaatatcttcacattcattgtgctcaagtgtccaatggccccggttatcgctgaatttccaataactctgaacatccattatatagttcacccacccatctttagcatgagcagaaactaagtttgtaatgtccttggatgagtagcaaggctcatgttgaccaagaaaggctttggattgtatgcaatctgcgatggtcatcaattttttgtgtcttttcttataggctaagaaccctataagattgtgttggaaaaccaggttggaccattcattggaagcataatatctccatgttaggatggtggcgaactccagaaagtaggtgatgtacaacaatatgaatgtaactttgatgtcaataccactgtaatcttctttctggctactatggcacatgccaatggacacgattggcactatcagagtaattaaccatacaaggaaagagaaactaataccaaagcttggtgtagctctgttttgatcatcgtattgccaaaccttactagaaataagattaaatgtatcagagagcccttcacataatgttctatagactctgtcggcatcgagcgaccagaaggattccaatttagtaagacgattagcataggagtatgcaaagtctacaaatagcttatcaggtatagagagatcgatgcttcttgctgattgtagggtttgagctgctgcttgttgcgtgttccttgaattgcataaaatcctttgctctttgtatgtattcttcttgctctacttctctatcgatagattcagtcctcggtgaaggatggaatgtgctgactatgctagtaaaggtagaactcatgagagctcttggcttgtcgaagcatttgaaaaccccaataataaaaagaagtattgctgcagcgagtaacctcctgtcggctgagggagaccaaaacttggtaaacacgtagagagctactatgacctgggacaatggagttatcgaaggttgttggtatttctttgagattttggttcatgaaatagtacataaattagcataacgcagtaaacaaggaaaggtacaacacggcataaacataagggttcatttggtacacaggaataagaaaaaaaataggaactgagattggaggcatagttgatcctttaggaattctaaaattcaagaactgtgtgaaagttgttgcttcgatgcttcatagaaagagcaattttacgatccttgaggaggtactatgaggtaccaaaaatttagtgtaaaatttggtacctcatggtacctcctcaagtaccgtagaattgctccataggaaaagtataggattgaggggagatagacaagacaaaagtttccctttagagttcatgttagaaatcctccaaattcccatgagtcaagttatttcataggaaatttgtaggaatctcatatgcccattcattcgtttcaaaggtgcatctaggaaaactttcaataaaattttggtcctacaaaaataatctatttgtcatttgttccgaacgagcctttaaattgaatgggttcaactgaacggaaaatccaagagtagttttgttttgacaaattacctgagacacagcggttactatgtgccacctccatagctcgttgtcctcaatattgtgggcggatatggaaaaaatctgtccaccgaggtggatgagtaggataggtgcccataacacctcgagatcatggctaccagttttgaactgcagcttcttctgacggttgaagagcgttgcgagagcgtatatcgctagagcatccccgcctaggtatgccaaccagatgctgaatctgaacaagggtcggatatgcttcttgcgagtgttggcaaagatcgccaggtacaactgaacgccgaggctgcccaatacaaggatgcgcagctgccactctttccaccattgcacagcacttgagagacccat
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| CDS seq | atgggtctctcaagtgctgtgcaatggtggaaagagtggcagctgcgcatccttgtattgggcagcctcggcgttcagttgtacctggcgatctttgccaacactcgcaagaagcatatccgacccttgttcagattcagcatctggttggcatacctaggcggggatgctctagcgatatacgctctcgcaacgctcttcaaccgtcagaagaagctgcagttcaaaactggtagccatgatctcgaggtgttatgggcacctatcctactcatccacctcggtggacagattttttccatatccgcccacaatattgaggacaacgagctatggaggtggcacataaaataccaacaaccttcgataactccattgtcccaggtcatagtagctctctacgtgtttaccaagttttggtctccctcagccgacaggaggttactcgctgcagcaatacttctttttattattggggttttcaaatgcttcgacaagccaagagctctcatgagttctacctttactagcatagtcagcacattccatccttcaccgaggactgaatctatcgatagagaaagcaagaagaatacatacaaagagcaaaggattttatgcaattcaaggaacacgcaacaagcagcagctcaaaccctacaatcagcaagaagcatcgatctctctatacctgataagctatttgtagactttgcatactcctatgctaatcgtcttactaaattggaatccttctggtcgctcgatgccgacagagtctatagaacattatgtgaagggctctctgatacatttaatcttatttctagtaaggtttggcaatacgatgatcaaaacagagctacaccaagctttggtattagtttctctttccttgtatggttaattactctgatagtgccaatcgtgtccattggcatgtgccatagtagccagaaagaagattacagtggtattgacatcaaagttacattcatattgttgtacatcacctactttctggagttcgccaccatcctaacatggagatattatgcttccaatgaatggtccaacctggttttccaacacaatcttatagggttcttagcctataagaaaagacacaaaaaattgatgaccatcgcagattgcatacaatccaaagcctttcttggtcaacatgagccttgctactcatccaaggacattacaaacttagtttctgctcatgctaaagatgggtgggtgaactatataatggatgttcagagttattggaaattcagcgataaccggggccattggacacttgagcacaatgaatgtgaagatattgttatccgaagcagtatagagaagcccttcgatgagagcatcattctctggcatctggccacagatttttgctttcgtcataaggacgcatctcttgaatctgatgagtgtgccaagccgtgtcaacaaatctccaactacatgatgcatcttttgttcgataatcctgagatgttgcctagcagcagaagagtgttgtccacagctgcctacgaagaactcaaggacatcctccaaggtgatgatgtatcatttttagacgaaaaagaacttactcaagagataattggaaaggcagagtttgcagaatgcggctttattcgcgatgcctggattcttgctgaagagctgaagcaattgggtgatgagaagaagatgtgggaaataatcaaaggcgtatggatcgagatgctctgcttctctgctggtagatgcaggggctacttacatgccaaaagcctcggcacgggaggggagtacctcaccgttgtctcgctggtcatgtcgcacgccggattggagacgttcgcggagcggcagcagagggtgcagcttcggctatccaaagaggaaagggtcaggattgcaaggcaaagaatagaagctgaaagaaaccaagctgatgctgcagcatcagctgaggtccaagttgttgtatcatcgtcctag
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| Protein seq | MGLSSAVQWWKEWQLRILVLGSLGVQLYLAIFANTRKKHIRPLFRFSIWLAYLGGDALAIYALATLFNRQKKLQFKTGSHDLEVLWAPILLIHLGGQIFSISAHNIEDNELWRWHIKYQQPSITPLSQVIVALYVFTKFWSPSADRRLLAAAILLFIIGVFKCFDKPRALMSSTFTSIVSTFHPSPRTESIDRESKKNTYKEQRILCNSRNTQQAAAQTLQSARSIDLSIPDKLFVDFAYSYANRLTKLESFWSLDADRVYRTLCEGLSDTFNLISSKVWQYDDQNRATPSFGISFSFLVWLITLIVPIVSIGMCHSSQKEDYSGIDIKVTFILLYITYFLEFATILTWRYYASNEWSNLVFQHNLIGFLAYKKRHKKLMTIADCIQSKAFLGQHEPCYSSKDITNLVSAHAKDGWVNYIMDVQSYWKFSDNRGHWTLEHNECEDIVIRSSIEKPFDESIILWHLATDFCFRHKDASLESDECAKPCQQISNYMMHLLFDNPEMLPSSRRVLSTAAYEELKDILQGDDVSFLDEKELTQEIIGKAEFAECGFIRDAWILAEELKQLGDEKKMWEIIKGVWIEMLCFSAGRCRGYLHAKSLGTGGEYLTVVSLVMSHAGLETFAERQQRVQLRLSKEERVRIARQRIEAERNQADAAASAEVQVVVSSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0006990 | OsPr106_11g0006990.01 | Chr11 | 5837617 | 5840238 | - | NAM | ||
| CDS seq | atgggtctctcaagtgctgtgcaatggtggaaagagtggcagctgcgcatccttgtattgggcagcctcggcgttcagttgtacctggcgatctttgccaacactcgcaagaagcatatccgacccttgttcagattcagcatctggttggcatacctaggcggggatgctctagcgatatacgctctcgcaacgctcttcaaccgtcagaagaagctgcagttcaaaactggtagccatgatctcgaggtgttatgggcacctatcctactcatccacctcggtggacagattttttccatatccgcccacaatattgaggacaacgagctatggaggtggcacataaaataccaacaaccttcgataactccattgtcccaggtcatagtagctctctacgtgtttaccaagttttggtctccctcagccgacaggaggttactcgctgcagcaatacttctttttattattggggttttcaaatgcttcgacaagccaagagctctcatgagttctacctttactagcatagtcagcacattccatccttcaccgaggactgaatctatcgatagagaaagcaagaagaatacatacaaagagcaaaggattttatgcaattcaaggaacacgcaacaagcagcagctcaaaccctacaatcagcaagaagcatcgatctctctatacctgataagctatttgtagactttgcatactcctatgctaatcgtcttactaaattggaatccttctggtcgctcgatgccgacagagtctatagaacattatgtgaagggctctctgatacatttaatcttatttctagtaaggtttggcaatacgatgatcaaaacagagctacaccaagctttggtattagtttctctttccttgtatggttaattactctgatagtgccaatcgtgtccattggcatgtgccatagtagccagaaagaagattacagtggtattgacatcaaagttacattcatattgttgtacatcacctactttctggagttcgccaccatcctaacatggagatattatgcttccaatgaatggtccaacctggttttccaacacaatcttatagggttcttagcctataagaaaagacacaaaaaattgatgaccatcgcagattgcatacaatccaaagcctttcttggtcaacatgagccttgctactcatccaaggacattacaaacttagtttctgctcatgctaaagatgggtgggtgaactatataatggatgttcagagttattggaaattcagcgataaccggggccattggacacttgagcacaatgaatgtgaagatattgttatccgaagcagtatagagaagcccttcgatgagagcatcattctctggcatctggccacagatttttgctttcgtcataaggacgcatctcttgaatctgatgagtgtgccaagccgtgtcaacaaatctccaactacatgatgcatcttttgttcgataatcctgagatgttgcctagcagcagaagagtgttgtccacagctgcctacgaagaactcaaggacatcctccaaggtgatgatgtatcatttttagacgaaaaagaacttactcaagagataattggaaaggcagagtttgcagaatgcggctttattcgcgatgcctggattcttgctgaagagctgaagcaattgggtgatgagaagaagatgtgggaaataatcaaaggcgtatggatcgagatgctctgcttctctgctggtagatgcaggggctacttacatgccaaaagcctcggcacgggaggggagtacctcaccgttgtctcgctggtcatgtcgcacgccggattggagacgttcgcggagcggcagcagagggtgcagcttcggctatccaaagaggaaagggtcaggattgcaaggcaaagaatagaagctgaaagaaaccaagctgatgctgcagcatcagctgaggtccaagttgttgtatcatcgtcctag
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| Protein seq | MGLSSAVQWWKEWQLRILVLGSLGVQLYLAIFANTRKKHIRPLFRFSIWLAYLGGDALAIYALATLFNRQKKLQFKTGSHDLEVLWAPILLIHLGGQIFSISAHNIEDNELWRWHIKYQQPSITPLSQVIVALYVFTKFWSPSADRRLLAAAILLFIIGVFKCFDKPRALMSSTFTSIVSTFHPSPRTESIDRESKKNTYKEQRILCNSRNTQQAAAQTLQSARSIDLSIPDKLFVDFAYSYANRLTKLESFWSLDADRVYRTLCEGLSDTFNLISSKVWQYDDQNRATPSFGISFSFLVWLITLIVPIVSIGMCHSSQKEDYSGIDIKVTFILLYITYFLEFATILTWRYYASNEWSNLVFQHNLIGFLAYKKRHKKLMTIADCIQSKAFLGQHEPCYSSKDITNLVSAHAKDGWVNYIMDVQSYWKFSDNRGHWTLEHNECEDIVIRSSIEKPFDESIILWHLATDFCFRHKDASLESDECAKPCQQISNYMMHLLFDNPEMLPSSRRVLSTAAYEELKDILQGDDVSFLDEKELTQEIIGKAEFAECGFIRDAWILAEELKQLGDEKKMWEIIKGVWIEMLCFSAGRCRGYLHAKSLGTGGEYLTVVSLVMSHAGLETFAERQQRVQLRLSKEERVRIARQRIEAERNQADAAASAEVQVVVSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0261500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0261500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021530 | SBH | 0.559765 | 1.943588 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007200 | RBH | 0.0 | 0.542706 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020840 | SBH | 0.133369 | 0.140162 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092400 | RBH | 0.04573 | 5.6896605 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006980 | RBH | 0.0 | 0.158728 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0094800 | RBH | 0.128229 | 8.6467375 | 0.228731 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021480 | SBH | 0.0 | 18.091593 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007100 | RBH | 0.0 | 2.150704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007060 | RBH | 0.0 | 0.644246 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006900 | RBH | 0.0 | 28.883427 | 0.0 |
