Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0063360 | OGI:99059670 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg477:242855-246971 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGGCGCCGTGGACGCTGCAGCGGGAGATGGTGTCGTCGTCTTATGTTTAGCACCGGTGGCAGTCTCAGAAAGATATTCCGGGAGGACAGCTTCCAGGAGATCCAACAAGGTCCATATATACTTGAACTTTGTGGCGAGGATGGCCTCGCCCTCCGAAGACGACCTCTCCGAGCATCCACTCTTGCAGAGCGGCAGCGGGTGGCCGCCGTGGAACAAGACGGTGAGATTCTGGTGGATCATAGGGGGCCTGTCTTCCATGTAGGTGTTTCCGCAGGTCTGGATGGCGTCAACGTCGCCGATGGTCTTGTTGCAGCTCAAGAGGCACTTGCCGGGATGTGTTTTTGTCGTTATCGCCTCGTCCCCTTTCCACTGCGGGAAGAAGGTGGCGATGATCACGGGGTCGGCGGCGGTGGTGGTTGCAATCATGGATTCTGCGAGCGATGAGGCCTCGTAGATCTTGACTCCACAGTAGTCGTACAGCCGTGTGTAGAGCTGCTCGTTATCCTGCGACTTGGCGACGTCGTCCGGGAGTGTTGGGTACACCCTGAGGCACGACGCTACGTCTGTCGTCTTGGAGCAGAATGCCTTGGGATCGTAGCTGCCGGTGGCGCCACTGACTGCAGCGGCTAGGAGGAGGAGGAGGAGGCGGAGGCGGAGGCGGAGTGGCAGCAGCAGTGAGCATATTTCTAACAGGTGCTCCGGTACCAACACTCATGTATGACGCCGCCATTATCATGGATCCTCGTCGGCTCGTCGTTGCTTGTCTGCTCATGATCAGTGACGCTATCCTGGCCGCACTGCCGCAGGCCGCCTCGCGTGGTGCTGGCTCTAATCGCAGGGACTGTTAGACTTAATCTTGTCGTTTGTGTTTTTTCATCCTATCAAGTCGTGTTTAGCTAATTAGTGGTTTGTGTCCACGTTAGTCTTTCCATGTGTGTACTGAGCAGTGAGCAGGTCAATAGTATGTGTGATTTAGTTTGATCAGGGAGGCCATGATCTGCATGCAAGTGAAGCATGGATTCTTGGCGAGAAGGCTGGATCAGATGGCTCATGCATGTGTTAGTGATTTAGTGGTGCTCTGCATGCAGCGAGTTGTGCCTTGCATGTAGGAAGGTGATTAGAGGATAATCCACGGGAGGTGCTTGCCGGTTTGTGCGGCAAGACGTGGCTTAACCTGTGCGTGTGTGTGCTCTATTTAACCAATGTAATCAGCATTTGTTAAAGTGTGTCAAAAGTGAAGTGAAAAACAAGTGTTTGTGCTGTGCGCGCTGGTGTGCAGCGTGGAAATTCCTTGCGTACTGTTCATCTTGTTCCTCCGTCAGTTCATCATCTCTGTGCGTGTATTTCATCAAGTGAGAAAGAGAGAGGTGTGTGTGCGAGTGAGTGTTTGGGCTGACAGGGACGAGCAAAGGTTGCCGAGCTCGCCAGCTGCTTGCTGCCTGCAAATAGAGTGAAAAAAAAAACAGGTGCAAATAGAAAAGGAAAAAGAAACCGAGTTCTGAAATTTTAGGAGCCACAGATGCCGGAGATGGTCACGCTGCTGACGGTGACATAGAAACGCACACTCCCTACTGGTTGCCTCATTTGAAACAAGGTGTAGAGAGATGGGAAGGAAAAAGATGGGAGGATGAAGGAAGATGGAAATGACATGTGGGTCCCACGTGCAGATGAGGAGATGGATGGGAAATGTGACGTTAGTGGCATGGTTCTAATTTTGTAAAATTTTAGTGGCATGGTTACGAATAGATGAATTGTAATGACATTTATTTAAAATGGCATGGATTGAATTAACCCTTGTAAAACGTATGGAAATTGAGGGATGGAGTCCTATTGGAAATAGGAGCTCTACACCTACTTTGAGTCGGCGGGCTTTGTGGTATAAATAGATGAGGGGTTGAGACTAGAAGATATTGACTTTTTGGGAGAGAAAAGTTGGGGTTTACTTCGAGGTTTCAATCCTAGTTCGTGAGTTGAGAGAGGAGTGCTTTAGATGCACTTTTGAAACACATATTGATGCAATGAAATTGATCTACTTTCAAGAGTTTTGTTGATACATGTTTTTCTGGATCTGACGGTTAAATCGGAGGCAAGTCGGCGGTCTAACCCAGATGGCGGTCCAACTGGCGATGAGGGGGTGGTCAGACCGGAATAAATCTAACGGTCAGATCGGCTATGTCGAGATCTCCATCAATTTGAAGGTAACTTTTTATTTCCACTAAAAGTTTTTGCCTTTTTTGTTTTCCCTACCATTCACCCCCTCTGGTAGGTTTGTTTGGTCTTGTTTCGATCGTACAATAGTGGTCCATATATGTCGTCATCTCCCACGAACTGTGGCACATGTGCGGAGCCCTCCCCTACTTCTGGCTACCGAGACGTAAGCTCCTCCTCACTAACCCTGCCCATCTAGCCATACTGGCCCGACCTGCATGCACGTTGCCATCTTGCTATATGCACCCCACCACACAGTGCAATAGCACCACCAACTCAGCTCCATGCCCGCTCACCATAGAAGTTAGACCGTCACCGTTGTGGGCCACTGGTTGCTCTTCCTCTCATTATATTTGGGGTACCTAATGATTTTGAGAACATGTGGTCGGAGGCATGTGATTTATGTAGGTGGTAGAACCATTATTTTTCTATTTTGTAAATCAATTTTCCTTTAATTCACCTATTCTGAGCCCATAACGATCATATAAAACAGGAGTAGTACCTCATCTTAACGATTATATAAAACAGGTGCAGTATGCGGATGAACTGATTTTTATATGGATCATAATTTAGAGCAAGCTGAAAATATTTTCTATATGTTTTAGAACAACTACCTATCCTCAATATTAATTTCCATAAAAGTGAACTTTTTGCTTTGCCTAAACTAAAGACTGAGGAACAATATTTGTAGTTGTTTGGTTGCCAGATAGATATTGTTCTTTTAGATATCTTGGTATATCACAATTGCAGCAAGTGAGGGCAAAACCACAAACCGTAAAAAGCAAAGGAAAAATCACAATTGCAGCAAGTAATTAAAGGCAAGAATACAATTATGCCTAAAAAACTAAATTCAATCTTTACATGCCAAAAAAAAAAACATAAGTTTGGTTATGATATATGCTTGCTGTATAAATGCTTTAATTATTTTTCAGAACATTTTGTAACTATTTGAGTGATAGGGAAGCAAGTATGTGTATGTACTTGAGGGGTGAACATCCAATTCCACTGTAAGAATTAGAACACTAACTGATGGATGAAATTAAATGGGCTACTATATACTGCAACAATTAGTGAAACATGATTCTTAAATGCTCTCTGTGAAATCTTGATTATTTCTTAGATACATAGTATATGCGTGTATATAGGGATTCCAAGAGCACTGCACTGTTGTGGTCTGGTCGATCGAATCGAAGGGACTGCATGCTTGTAGTTGCTCATGGCGCCGGGGCCGCCGCAGCAGCGACGTAGGGAGATGGTACCGTCGTCGTCGCAGTCCCAGTCTCAGAAAGATATTCCGGTAGGACAGCTTTCATGAGATCCAACAAGCTCCATATATAGTTGAACTTGGTGGCGAGGAGGGCCTCACCCTCTGACGACGAGCCGTCAAGGCATCCACTCTTGCAGAGTGACGGCGGGTGGCCGCCATGGAACAAGACGGTGAGGTTCTGGTGGATGATGGGGGGCCTGTCTTCCATGTAGGTGTGTCCGCAGGTTAGGATGGCGTCAACTTCGCCGATGGTCTTGTTGCAGCTCAGGAGGCACTTGTGCCTGGAGGTGTTTTTGTCGTCATCGCCTCGTCCCTTTTCCACTGCGGGAAGAAGGGGGCGCTGATCTTGGGGTCGGCAGCGGTGGTGGTGGCAATCATGGATTCCGCGAGCGACGTGGCCTCGTAGGTCTTGAAAGAGCAGTAGCGGACCAGCCGTTTGTACAACTCTTTGTTGTCCTGCGCCTTGGTGACGATGTCTGGGAGTGTCGGGAACACCCTAAGGCACGATGCTATGTCTGTCGTCTTGGAGCAGAACGCCTTGGGGTCGTAGCTGCCTATGGCAGCGGCAACGAGGAGGAAAAGAAGGAGGAGTGGTAGCAGCAGTGAGTGAGGCGATGCAAGAGAGGAGGAGCCGGCCAT
More
|
||||||||||
| CDS seq | ATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCACAACCGCTGCAGTCAGTGGCGCCACCGGCAGCTACGATCCCAAGGCATTCTGCTCCAAGACGACAGACGTAGCGTCGTGCCTCAGGGTGTACCCAACACTCCCGGACGACGTCGCCAAGTCGCAGGATAACGAGCAGCTCTACACACGGCTGTACGACTACTGTGGAGTCAAGATCTACGAGGCCTCATCGCTCGCAGAATCCATGATTGCAACCACCACCGCCGCCGACCCCGTGATCATCGCCACCTTCTTCCCGCAGTGGAAAGGGGACGAGGCGATAACGACAAAAACACATCCCGGCAAGTGCCTCTTGAGCTGCAACAAGACCATCGGCGACGTTGACGCCATCCAGACCTGCGGAAACACCTACATGGAAGACAGGCCCCCTATGATCCACCAGAATCTCACCGTCTTGTTCCACGGCGGCCACCCGCTGCCGCTCTGCAAGAGTGGATGCTCGGAGAGGTCGTCTTCGGAGGGCGAGGCCATCCTCGCCACAAAGTTCAAGTATATATGGACCTTGTTGGATCTCCTGGAAGCTGTCCTCCCGGAATATCTTTCTGAGACTGCCACCGGTGCTAAACATAAGACGACGACACCATCTCCCGCTGCAGCGTCCACGGCGCCATGA
More
|
||||||||||
| Protein seq | MAGSSSLASPHSLLLPLLLLFLLVAAAIGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPGTTAAVSGATGSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESMIATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRPPMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAILATKFKYIWTLLDLLEAVLPEYLSETATGAKHKTTTPSPAAASTAP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0063360 | OsLiXu_Ung0063360.01 | ChrUN-Ctg477 | 242855 | 246971 | - | NAM | ||
| CDS seq | ATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGTTGCCGCTGCCATAGGCAGCTACGACCCCAAGGCGTTCTGCTCCAAGACGACAGACATAGCATCGTGCCTTAGGGTGTTCCCGACACTCCCAGACATCGTCACCAAGGCGCAGGACAACAAAGAGTTGTACAAACGGCTGGTCCGCTACTGCTCTTTCAAGACCTACGAGGCCACGTCGCTCGCGGAATCCATGATTGCCACCACCACCGCTGCCGACCCCAAGATCAGCGCCCCCTTCTTCCCGCAGTGGAAAAGGGACGAGGCGATGACGACAAAAACACCTCCAGGCACAACCGCTGCAGTCAGTGGCGCCACCGGCAGCTACGATCCCAAGGCATTCTGCTCCAAGACGACAGACGTAGCGTCGTGCCTCAGGGTGTACCCAACACTCCCGGACGACGTCGCCAAGTCGCAGGATAACGAGCAGCTCTACACACGGCTGTACGACTACTGTGGAGTCAAGATCTACGAGGCCTCATCGCTCGCAGAATCCATGATTGCAACCACCACCGCCGCCGACCCCGTGATCATCGCCACCTTCTTCCCGCAGTGGAAAGGGGACGAGGCGATAACGACAAAAACACATCCCGGCAAGTGCCTCTTGAGCTGCAACAAGACCATCGGCGACGTTGACGCCATCCAGACCTGCGGAAACACCTACATGGAAGACAGGCCCCCTATGATCCACCAGAATCTCACCGTCTTGTTCCACGGCGGCCACCCGCTGCCGCTCTGCAAGAGTGGATGCTCGGAGAGGTCGTCTTCGGAGGGCGAGGCCATCCTCGCCACAAAGTTCAAGTATATATGGACCTTGTTGGATCTCCTGGAAGCTGTCCTCCCGGAATATCTTTCTGAGACTGCCACCGGTGCTAAACATAAGACGACGACACCATCTCCCGCTGCAGCGTCCACGGCGCCATGA
More
|
|||||||
| Protein seq | MAGSSSLASPHSLLLPLLLLFLLVAAAIGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPGTTAAVSGATGSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESMIATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRPPMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAILATKFKYIWTLLDLLEAVLPEYLSETATGAKHKTTTPSPAAASTAP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0191800 | SBH | 0.0 | 0.0 | 5.199798 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08707 | SBH | 0.0 | 0.0 | 1.335064 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0194400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005980 | SBH | 0.0 | 0.0 | 7.849263 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005990 | SBH | 0.0 | 0.0 | 14.464406 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006020 | SBH | 0.0 | 0.0 | 10.659677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005930 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005900 | SBH | 0.0 | 0.0 | 33.442772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0077900 | SBH | 0.007876 | 0.0458685 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005950 | SBH | 0.0 | 0.0 | 11.502898 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0078700 | SBH | 0 | 0 | 0.0034995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005920 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005980 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006000 | SBH | 0.0 | 0.0 | 0.486084 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006000 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006040 | SBH | 0.0 | 0.0 | 5.765546 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005810 | SBH | 0.0 | 0.0 | 60.548889 |
