Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0005990 | OGI:11014520 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:4655902-4659981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagaaagatattccgggaggacagcttccaggagatccaacaaggtccatatatacttgaactttgtggcggatggcctcgccctccgaagacgacctctccgagcatccactcttgcagagcggcagcgggtggccgccgtggaacaagacggtgagattctggtggatcatagggggcctgtcttccatgtaggtgtttccgcaggtctggatggcgtcaacgtcgccgatggtcttgttgcagctcaagaggcacttgccgggatgtgtttttgtcgttatcgcctcgtcccctttccactgcgggaagaaggtggcgatgatcacggggtcggcggcggtggtggttgcaatcatggattctgcgagcgatgaggcctcgtagatcttgactccacagtagtcgtacagccgtgtgtagagctgctcgttatcctgcgacttggcgacgtcgtccgggagtgttgggtacaccctgaggcacgacgctacgtctgtcgtcttggagcagaatgccttgggatcgtagctgccggtggcgccactgactgcagcggctaggaggaggaggaggaggcggaggcggaggcggagtggcagcagcagtgagcatatttctaacaggtgctccggtaccaacactcatgtatgacgccgccattatcatggatcctcgtcggctcgtcgttgcttgtctgctcatgatcagtgacgctatcctggccgcactgccgcaggccgcctcgcgtggtgctggctctaatcgcagggactgttagacttaatcttgtcgtttgtgttttttcatcctatcaagtcgtgtttagctaattagtggtttgtgtccacgttagtctttccatgtgtgtactgagcagtgagcaggtcaatagtatgtgtgatttagtttgatcagggaggccatgatctgcatgcaagtgaagcatggattcttggcgagaaggctggatcagatggctcatgcatgtgttagtgatttagtggtgctctgcatgcagcgagttgtgccttgcatgtaggaaggtgattagaggataatccacgggaggtgcttgccggtttgtgcggcaagacgtggcttaacctgtgcgtgtgtgtgctctatttaaccaatgtaatcagcatttgttaaagtgtgtcaaaagtgaagtgaaaaacaagtgtttgtgctgtgcgcgctggtgtgcagcgtggaaattccttgcgtactgttcatcttgttcctccgtcagttcatcatctctgtgcgtgtatttcatcaagtgagaaagagagaggtgtgtgtgcgagtgagtgtttgggctgacagggacgagcaaaggttgccgagctcgccagctgcttgctgcctgcaaatagagtgaaaaaaaaaacaggtgcaaatagaaaaggaaaagaaaccgagttctgaaattttaggagccacagatgccggagatggtcacgctgctgacggtgacatagaaacgcacactccctactggttgcctcatttgaaacaaggtgtagagagatgggaaggaaaaagatgggaggatgaaggaagatggaaatgacatgtgggtcccacgtgcagatgaggagatggatgggaaatgtgacgttagtggcatggttctaattttgtaaaattttagtggcatggttacgaatagatgaattgtaatgacatttatttaaaatggcatggattgaattaacccttgtaaaacgtatggaaattgagggatggagtcctattggaaataggagctctacacctactttgagtcggcgggctttgtggtataaatagatgaggggttgagactagaagatattgactttttgggagagaaaagttggggtttacttcgaggtttcaatcctagttcgtgagttgagagaggagtgctttagatgcacttttgaaacacatattgatgcaatgaaattgatctactttcaagagttttgttgatacatgtttttctggatctgacggttaaatcggaggcaagtcggcggtctaacccagatggcggtccaactggcgatgagggggtggtcagaccggaataaatctaacggtcagatcggctatgtcgagatctccatcaatttgaaggtaactttttatttccactaaaagtttttgccttttttgttttccctaccattcaccccctctggtaggtttgtttggtcttgtttcgatcgtacaatagtggtccatatatgtcgtcatctccacgaactgtggcacatgtgcggagccctcccctacttctggctaccgagacgtaagctcctcctcactaaccctgcccatctagccatactggcccgacctgcatgcacgttgccatcttgctatatgcaccccaccacacagtgcaatagcaccaccaactcagctccatgcccgctcaccatagaagttagaccgtcaccgttgtgggccactggttgctcttcctctcattatatttggggtacctaatgattttgagaacatgtggtcggaggcatgtgatttatgtaggtggtagaaccattatttttctattttgtaaatcaattttcctttaattcacctattctgagcccataacgatcatataaaacaggagtagtacctcatcttaacgattatataaaacaggtgcagtatgcggatgacacactgatttttatatggatcataatttagagcaagctgaaaATattttctatatgttttagaacaactacctatcctcaatattaatttccataaaagtgaactttttgctttgcctaaactaaagactgaggaacaatatttgtagttgtttggttgccagatagatattgttcttttagatatcttggtatatcacaattgcagcaagtgagggcaaaaccacaaaccgtaaaaagcaaaggaaaaatcacaattgcagcaagtaattaaaggcaagaatacaattatgcctaaaaaactaaattcaatctttacatgccaaaaaaaaaaacataagtttggttatgatatatgcttgctgtataaatgctttaattatttttcagaacattttgtaactatttgagtgatagggaagcaagtatgtgtatgtacttgaggggtgaacatccaattccactgtaagaattagaacactaactgatggatgaaattaaatgggctactatatactgcaacaattagtgaaacatgattcttaaatgctctctgtgaaatcttgattaTttcttagatacatagtatatgcgtgtatatagggattccaagagcactgcactgttgtggtctggtcgatcgaatcgaagggactgcatgcttgtagttgctcatggcgccggggccgccgcagcagcgacgtagggagatggtaccgtcgtcgtcgcagtcccagtctcagaaagatattccggtaggacagctttcatgagatccaacaagctccatatatagttgaacttggtggcgaggagggcctcaccctctgacgacgagccgtcaaggcatccactcttgcagagtgacggcgggtggccgccatggaacaagacggtgaggttctggtggatgatggggggcctgtcttccatgtaggtgtgtccgcaggttaggatggcgtcaacttcgccgatggtcttgttgcagctcaggaggcacttgcctggaggtgtttttgtcgtcatcgcctcgtcccttttccactgcgggaagaagggggcgctgatcttggggtcggcagcggtggtggtggcaatcatggattccgcgagcgacgtggcctcgtaggtcttgaaagagcagtagcggaccagccgtttgtacaactctttgttgtcctgcgccttggtgacgatgtctgggagtgtcgggaacaccctaaggcacgatgctatgtctgtcgtcttggagcagaacgccttggggtcgtagctgcctatggcagcggcaCGAGGAGGAAAAGAAGGAGGAGTGGTAGCAGCAGTGAGTGAGGCGATGCAAGAGAGGAGGAGCCGGCCATGCTTGCTAGGATGGGAATTGAGGGTAACTAACAT
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| CDS seq | ATGTTAGTTACCCTCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGtgccgctgccataggcagctacgaccccaaggcgttctgctccaagacgacagacatagcatcgtgccttagggtgttcccgacactcccagacatcgtcaccaaggcgcaggacaacaaagagttgtacaaacggctggtccgctactgctctttcaagacctacgaggccacgtcgctcgcggaatccatgattgccaccaccaccgctgccgaccccaagatcagcgcccccttcttcccgcagtggaaaagggacgaggcgatgacgacaaaaacacctccaggcaagtgcctcctgagctgcaacaagaccatcggcgaagttgacgccatcctaacctgcggacacacctacatggaagacaggccccccatcatccaccagaacctcaccgtcttgttccatggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggccctcctcgccaccaagttcaactatatatggagcttgttggatctcatgaaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacgcacctgttagaaatatgctcactgctgctgccactccgcctccgcctccgcctcctcctcctcctcctagccgctgcagtcagtggcgccaccggcagctacgatcccaaggcattctgctccaagacgacagacgtagcgtcgtgcctcagggtgtacccaacactcccggacgacgtcgccaagtcgcaggataacgagcagctctacacacggctgtacgactactgtggagtcaagatctacgaggcctcatcgctcgcagaatccatgattgcaaccaccaccgccgccgaccccgtgatcatcgccaccttcttcccgcagtggaaaggggacgaggcgataacgacaaaaacacatcccggcaagtgcctcttgagctgcaacaagaccatcggcgacgttgacgccatccagacctgcggaaacacctacatggaagacaggccccctatgatccaccagaatctcaccgtcttgttccacggcggccacccgctgccgctctgcaagagtggatgctcggagaggtcgtcttcggagggcgaggccatccgccacaaagttcaagtatatatggaccttgttggatctcctggaagctgtcctcccggaatatctttctga
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| Protein seq | MLVTLNSHPSKHGRLLLSCIASLTAATTPPSFPPRAAAIGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPGKCLLSCNKTIGEVDAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEALLATKFNYIWSLLDLMKAVLPEYLSETGTATTTHLLEICSLLLPLRLRLRLLLLLLAAAVSGATGSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESMIATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRPPMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAIRHKVQVYMDLVGSPGSCPPGISF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0005990 | OsKeNa_11g0005990.01 | Chr11 | 4655902 | 4659981 | - | NAM | ||
| CDS seq | ATGTTAGTTACCCTCAATTCCCATCCTAGCAAGCATGGCCGGCTCCTCCTCTCTTGCATCGCCTCACTCACTGCTGCTACCACTCCTCCTTCTTTTCCTCCTCGtgccgctgccataggcagctacgaccccaaggcgttctgctccaagacgacagacatagcatcgtgccttagggtgttcccgacactcccagacatcgtcaccaaggcgcaggacaacaaagagttgtacaaacggctggtccgctactgctctttcaagacctacgaggccacgtcgctcgcggaatccatgattgccaccaccaccgctgccgaccccaagatcagcgcccccttcttcccgcagtggaaaagggacgaggcgatgacgacaaaaacacctccaggcaagtgcctcctgagctgcaacaagaccatcggcgaagttgacgccatcctaacctgcggacacacctacatggaagacaggccccccatcatccaccagaacctcaccgtcttgttccatggcggccacccgccgtcactctgcaagagtggatgccttgacggctcgtcgtcagagggtgaggccctcctcgccaccaagttcaactatatatggagcttgttggatctcatgaaagctgtcctaccggaatatctttctgagactgggactgcgacgacgacgcacctgttagaaatatgctcactgctgctgccactccgcctccgcctccgcctcctcctcctcctcctagccgctgcagtcagtggcgccaccggcagctacgatcccaaggcattctgctccaagacgacagacgtagcgtcgtgcctcagggtgtacccaacactcccggacgacgtcgccaagtcgcaggataacgagcagctctacacacggctgtacgactactgtggagtcaagatctacgaggcctcatcgctcgcagaatccatgattgcaaccaccaccgccgccgaccccgtgatcatcgccaccttcttcccgcagtggaaaggggacgaggcgataacgacaaaaacacatcccggcaagtgcctcttgagctgcaacaagaccatcggcgacgttgacgccatccagacctgcggaaacacctacatggaagacaggccccctatgatccaccagaatctcaccgtcttgttccacggcggccacccgctgccgctctgcaagagtggatgctcggagaggtcgtcttcggagggcgaggccatccgccacaaagttcaagtatatatggaccttgttggatctcctggaagctgtcctcccggaatatctttctga
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| Protein seq | MLVTLNSHPSKHGRLLLSCIASLTAATTPPSFPPRAAAIGSYDPKAFCSKTTDIASCLRVFPTLPDIVTKAQDNKELYKRLVRYCSFKTYEATSLAESMIATTTAADPKISAPFFPQWKRDEAMTTKTPPGKCLLSCNKTIGEVDAILTCGHTYMEDRPPIIHQNLTVLFHGGHPPSLCKSGCLDGSSSEGEALLATKFNYIWSLLDLMKAVLPEYLSETGTATTTHLLEICSLLLPLRLRLRLLLLLLAAAVSGATGSYDPKAFCSKTTDVASCLRVYPTLPDDVAKSQDNEQLYTRLYDYCGVKIYEASSLAESMIATTTAADPVIIATFFPQWKGDEAITTKTHPGKCLLSCNKTIGDVDAIQTCGNTYMEDRPPMIHQNLTVLFHGGHPLPLCKSGCSERSSSEGEAIRHKVQVYMDLVGSPGSCPPGISF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0005990 | OsKeNa_11g0005990.02 | Chr11 | 4659078 | 4659708 | - | IsoSeq | ||
| CDS seq | cacgtcgctcgcggaatccatgattgccaccaccaccgctgccgaccccaagatcagcgcccccttcttcccgcagtggaaaagggacgaggcgatgacgacaaaaacacctccaggcaagtgcctcctgagctgcaacaagaccatcggcga |
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| Protein seq | HVARGIHDCHHHRCRPQDQRPLLPAVEKGRGDDDKNTSRQVPPELQQDHRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 14.464406 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0193800 | RBH | 0.0 | 0.0 | 14.162162 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08707 | RBH | 0.0 | 0.0 | 1.335064 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0192500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005980 | RBH | 0.0 | 0.0 | 7.849263 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006030 | RBH | 0.0 | 0.0 | 10.928123 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006020 | RBH | 0.0 | 0.0 | 10.659677 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005920 | SBH | 0.0 | 0.0 | 91.978531 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0077900 | RBH | 0.007876 | 0.0458685 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005940 | RBH | 0.0 | 0.0 | 14.159996 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0078300 | RBH | 0 | 0 | 0.0685385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006060 | RBH | 0.0 | 0.0 | 0.245021 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006030 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006060 | RBH | 0.0 | 0.0 | 9.234823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005860 | RBH | 0.000000 | 0.000000 | 55.302120 |
