Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_Ung0058230 OGI:99055860 | 1/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) ChrUN-Ctg437:258242-261140
Gene Symbol -
DNA seq

AATTAGTTTGTGTTTTAATAAGATTAGACACGACCTTTTTTTACTGCAGAAAAACCTGTCTTTGTTATAGTTCTGAGCATAGCATTGGCAAATTGGTACGTATTGCACCATAGTTGTATAAAATAACTTGTGAGTGTTGAAAGTAAAAAAATAACTGGTGCAAAGTATTTGATAGATGGTTAGGAAAATATTAATAGTATTTTCTGAAGGCCCATATTCCACAGATGGACTTGAAAAACTCTACAATCTACATCAGGAAGCATCCATTTCATTCATACAATCGATGCTAGAGCAACCCATAGCTCCATGGTCAAAGGTTTGAATGATTCATTTTCAATGCAACCACTTCATCCTTCATTGCCTGACAATATTTTTCAGCAGCTTCTACTTCCTTCTCTAAACTGAATATAGATGAACTAGAAGCTTGATTCTTTGCGTCCAAATGCCACTCCATTGTTTGTATATTGTGTTTCAGTTTACTCAGATGGCTTGACAGTGATTGTAACCTGTTTGCTTCATGCTCTTTTTTCCGAGCATCCTCAAGCCTTGTAATAGAATCTTGAAGCAGCCTAAGACGGCTTTGTGGCTCCTTCAAGCGGGCAATGAGATGTTTCACATTGAACCCTAGTTGCTCCAATTCCTGAGCCTTTTTCATCAAACAAACAATCTCAGAAGCATCTGTATCACATGATGTCTTGAGCACCTCCTTAGCTAAACCAACCAGCAAAAACCATAGTCCACTGTAGGCTAGATCTCCTAGAGCTTCATCATTGTTCAGCAACCCTCGGTAATGTGGTTTCTGCGGAATGAACTCAAAGAACAGAGGGTATTCCCTCCTGGCTGCTTCAGAAAAAGGGTCATCTTTATTATCCTTCAGTATATCTCGGTTTCTTCTATCTTCCTCATCCTCATCAGAACATTCCTCGCGTTGTGACAGAAGCCCAGAGCGCACAAACTCTTCTAGCTCAAGTACAAGCTGCCTATCATGATGTTTGGGATTAGGGACACTTTGTTCCTCCTCATCGTCAAGATTTATTACTTCACAATTCTTAGCAGGTGGTTCAAGAACAATACATTCATCATTATTAAGTTGTGCCAGTTCATCACATCTCTTACTAGAAGAGTTGGAATCTTCCTGTGGTCCAGAGCGCTCCTGAACATCAAGTTGCAATGAATTATTTTCATTGTTACTCACAGTTAGCGGCACCCAATCATAGAATTGGGGACACTCGCCGCCCTCATTAGCAAATACCTTATTTTTCTTCTTCTTCCTATTCACATCGGTTGATTTATCTCGTATTTTTTTAATGGCATCTTTTCTTTTCACTGCATTTTGACTACGGTCAAAATCATATGCACTAAGGCCTAGGACAACTTGATTCCATTCGTTGTTGGGAGCAACATTACCCAGTTGTGTTAACTGCCTTTTTGTCATGCATTTACTGTTCTCTTGCTTGGTGCCTTTTCTAAAATGATCAACAGCCATCTGTACCACACTTATCAGACCTGTATTCAGAGGCAATGCGCTCGTCTTATTTTCCTTGTTTAACATCATCCCACAACCATGTTGATTGCCTTCCTGATGCCTCTCGAAACGTGCATTCCACCATGCAGCATAATCCTTGCTAGCAACCCCATGTCTACCAATACTTGGTACCCAAACCTCAATTCCACTGGAATCAGAACCATGTATAATAGATACAGGAAAATCCTGATCATAACCAAATTGCCTAGCAACAAGGTGTGGATTATACATTACTGAATTGGCCATCCCATCACCAAACCATCCAGTCAACACTGCTTGCGTAATCATTGCACTGTAATCATCCAACCACTTTGGCTTATGTTTACTTTCCGAACTCGCTGTAGTGGTTTTCTCATTGAACCACTCAGGTTGCGTCCAGTTCAGCGAGTTGTACTGGTATGGCCTCCACAGAAAGCATGCCTCATCCTGGAAAACCTGTTGAGCCTCCTCCGATGTGGTTGTCCTCTTCCTCCGGCTCCAAAGGTGCACTCGAGCATTCGAGACAGGGAACGGTGGAGCCTTCAGTGGCGGTGGGCGCAAGCAGTCGAAACGTTCCCATATCCACACCTGAAGAAGCAAGAGAGGGCCCCAGGTTTCAACACGCCCGCTGACCCCCTCCATTACCCCAGAAGCAACAATCCTATCCATATCGGCATACAGATTCGCTACCATTGCCGGGCCAAGGGCAATACGCTCTCCAAGACTAAGACGAGCGGCGAGCGCAAACGTGCAATCCGGCAGCTCCCCGCTCCTTGGCCGCAGCCGCGGAGTAACGAAGAAAGCAAGCCAGTATGCGAGGAACCCAAGCCGCCGCAGCCCATCATCCTCGCCGGGGCGGATGCTGCTGTCGAACCACTCGAGCCACAACTCCGCCGACACGCGGCGGGCGTCGCGGGCGCAGGGGTGGAGCTCCCGAATCTTCTCCTTCTCGATGACGAGGCGGATTCGGAGGTCGTCCTCCTCGGGGGTGAGGGGCCGGTCCAGCGGGGCGCCGGTCGGGGGCAGGCCGGCGAGGAGGAGCGCGTCCTCGAGGGAGAACGTGGCGGCCCCGGCGGGGAGGCGGAAGGCGTGGGAGGCCGGGTCCCAGAACGAGAGCAGCGCCGCTAGGGCGCCGCGGTCGGGATTGACGGTGGCGGCGGACGCCCCGACGGCGTCGGCGATGCCGGCGGAGCGGAGGAGCGGCGCGAACGCGGGGTCGCGGAGGGCGGCGGCGACCCAGGCGGACCACCGCGCGCAGGGGGAGAGGTGGCGGAAGGAGAGCGGCGGGATGGGGTGGGGCGGCGAGGAGGGGGCCGGCGGAGGGAGGGTCGTGACGCGGGAGAGGAGGGGGATGGGGAGGAAGGAGGGGTCTCCTCCGTCGTCGGAGGGTGGCAT

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CDS seq

ATGCCACCCTCCGACGACGGAGGAGACCCCTCCTTCCTCCCCATCCCCCTCCTCTCCCGCGTCACGACCCTCCCTCCGCCGGCCCCCTCCTCGCCGCCCCACCCCATCCCGCCGCTCTCCTTCCGCCACCTCTCCCCCTGCGCGCGGTGGTCCGCCTGGGTCGCCGCCGCCCTCCGCGACCCCGCGTTCGCGCCGCTCCTCCGCTCCGCCGGCATCGCCGACGCCGTCGGGGCGTCCGCCGCCACCGTCAATCCCGACCGCGGCGCCCTAGCGGCGCTGCTCTCGTTCTGGGACCCGGCCTCCCACGCCTTCCGCCTCCCCGCCGGGGCCGCCACGTTCTCCCTCGAGGACGCGCTCCTCCTCGCCGGCCTGCCCCCGACCGGCGCCCCGCTGGACCGGCCCCTCACCCCCGAGGAGGACGACCTCCGAATCCGCCTCGTCATCGAGAAGGAGAAGATTCGGGAGCTCCACCCCTGCGCCCGCGACGCCCGCCGCGTGTCGGCGGAGTTGTGGCTCGAGTGGTTCGACAGCAGCATCCGCCCCGGCGAGGATGATGGGCTGCGGCGGCTTGGGTTCCTCGCATACTGGCTTGCTTTCTTCGTTACTCCGCGGCTGCGGCCAAGGAGCGGGGAGCTGCCGGATTGCACGTTTGCGCTCGCCGCTCGTCTTAGTCTTGGAGAGCGTATTGCCCTTGGCCCGGCAATGGTAGCGAATCTGTATGCCGATATGGATAGGATTGTTGCTTCTGGGGTAATGGAGGGGGTCAGCGGGCGTGTTGAAACCTGGGGCCCTCTCTTGCTTCTTCAGGTGTGGATATGGGAACGTTTCGACTGCTTGCGCCCACCGCCACTGAAGGCTCCACCGTTCCCTGTCTCGAATGCTCGAGTGCACCTTTGGAGCCGGAGGAAGAGGACAACCACATCGGAGGAGGCTCAACAGGTTTTCCAGGATGAGGCATGCTTTCTGTGGAGGCCATACCAGTACAACTCGCTGAACTGGACGCAACCTGAGTGGTTCAATGAGAAAACCACTACAGCGAGTTCGGAAAGTAAACATAAGCCAAAGTGGTTGGATGATTACAGTGCAATGATTACGCAAGCAGTGTTGACTGGATGGTTTGGTGATGGGATGGCCAATTCAGTAATGTATAATCCACACCTTGTTGCTAGGCAATTTGGTTATGATCAGGATTTTCCTGTATCTATTATACATGGTTCTGATTCCAGTGGAATTGAGGTTTGGGTACCAAGTATTGGTAGACATGGGGTTGCTAGCAAGGATTATGCTGCATGGTGGAATGCACGTTTCGAGAGGCATCAGGAAGGCAATCAACATGGTTGTGGGATGATGTTAAACAAGGAAAATAAGACGAGCGCATTGCCTCTGAATACAGGTCTGATAAGTGTGGTACAGATGGCTGTTGATCATTTTAGAAAAGGCACCAAGCAAGAGAACAGTAAATGCATGACAAAAAGGCAGTTAACACAACTGGGTAATGTTGCTCCCAACAACGAATGGAATCAAGTTGTCCTAGGCCTTAGTGCATATGATTTTGACCGTAGTCAAAATGCAGTGAAAAGAAAAGATGCCATTAAAAAAATACGAGATAAATCAACCGATGTGAATAGGAAGAAGAAGAAAAATAAGGTATTTGCTAATGAGGGCGGCGAGTGTCCCCAATTCTATGATTGGGTGCCGCTAACTGTGAGTAACAATGAAAATAATTCATTGCAACTTGATGTTCAGGAGCGCTCTGGACCACAGGAAGATTCCAACTCTTCTAGTAAGAGATGTGATGAACTGGCACAACTTAATAATGATGAATGTATTGTTCTTGAACCACCTGCTAAGAATTGTGAAGTAATAAATCTTGACGATGAGGAGGAACAAAGTGTCCCTAATCCCAAACATCATGATAGGCAGCTTGTACTTGAGCTAGAAGAGTTTGTGCGCTCTGGGCTTCTGTCACAACGCGAGGAATGTTCTGATGAGGATGAGGAAGATAGAAGAAACCGAGATATACTGAAGGATAATAAAGATGACCCTTTTTCTGAAGCAGCCAGGAGGGAATACCCTCTGTTCTTTGAGTTCATTCCGCAGAAACCACATTACCGAGGGTTGCTGAACAATGATGAAGCTCTAGGAGATCTAGCCTACAGTGGACTATGGTTTTTGCTGGTTGGTTTAGCTAAGGAGGTGCTCAAGACATCATGTGATACAGATGCTTCTGAGATTGTTTGTTTGATGAAAAAGGCTCAGGAATTGGAGCAACTAGGGTTCAATGTGAAACATCTCATTGCCCGCTTGAAGGAGCCACAAAGCCGTCTTAGGCTGCTTCAAGATTCTATTACAAGGCTTGAGGATGCTCGGAAAAAAGAGCATGAAGCAAACAGGTTACAATCACTGTCAAGCCATCTGAGTAAACTGAAACACAATATACAAACAATGGAGTGGCATTTGGACGCAAAGAATCAAGCTTCTAGTTCATCTATATTCAGTTTAGAGAAGGAAGTAGAAGCTGCTGAAAAATATTGTCAGGCAATGAAGGATGAAGTGGTTGCATTGAAAATGAATCATTCAAACCTTTGA

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Protein seq

MPPSDDGGDPSFLPIPLLSRVTTLPPPAPSSPPHPIPPLSFRHLSPCARWSAWVAAALRDPAFAPLLRSAGIADAVGASAATVNPDRGALAALLSFWDPASHAFRLPAGAATFSLEDALLLAGLPPTGAPLDRPLTPEEDDLRIRLVIEKEKIRELHPCARDARRVSAELWLEWFDSSIRPGEDDGLRRLGFLAYWLAFFVTPRLRPRSGELPDCTFALAARLSLGERIALGPAMVANLYADMDRIVASGVMEGVSGRVETWGPLLLLQVWIWERFDCLRPPPLKAPPFPVSNARVHLWSRRKRTTTSEEAQQVFQDEACFLWRPYQYNSLNWTQPEWFNEKTTTASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSIIHGSDSSGIEVWVPSIGRHGVASKDYAAWWNARFERHQEGNQHGCGMMLNKENKTSALPLNTGLISVVQMAVDHFRKGTKQENSKCMTKRQLTQLGNVAPNNEWNQVVLGLSAYDFDRSQNAVKRKDAIKKIRDKSTDVNRKKKKNKVFANEGGECPQFYDWVPLTVSNNENNSLQLDVQERSGPQEDSNSSSKRCDELAQLNNDECIVLEPPAKNCEVINLDDEEEQSVPNPKHHDRQLVLELEEFVRSGLLSQREECSDEDEEDRRNRDILKDNKDDPFSEAARREYPLFFEFIPQKPHYRGLLNNDEALGDLAYSGLWFLLVGLAKEVLKTSCDTDASEIVCLMKKAQELEQLGFNVKHLIARLKEPQSRLRLLQDSITRLEDARKKEHEANRLQSLSSHLSKLKHNIQTMEWHLDAKNQASSSSIFSLEKEVEAAEKYCQAMKDEVVALKMNHSNL

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_Ung0058230 OsLiXu_Ung0058230.01 ChrUN-Ctg437 258242 261140 - NAM
CDS seq

ATGCCACCCTCCGACGACGGAGGAGACCCCTCCTTCCTCCCCATCCCCCTCCTCTCCCGCGTCACGACCCTCCCTCCGCCGGCCCCCTCCTCGCCGCCCCACCCCATCCCGCCGCTCTCCTTCCGCCACCTCTCCCCCTGCGCGCGGTGGTCCGCCTGGGTCGCCGCCGCCCTCCGCGACCCCGCGTTCGCGCCGCTCCTCCGCTCCGCCGGCATCGCCGACGCCGTCGGGGCGTCCGCCGCCACCGTCAATCCCGACCGCGGCGCCCTAGCGGCGCTGCTCTCGTTCTGGGACCCGGCCTCCCACGCCTTCCGCCTCCCCGCCGGGGCCGCCACGTTCTCCCTCGAGGACGCGCTCCTCCTCGCCGGCCTGCCCCCGACCGGCGCCCCGCTGGACCGGCCCCTCACCCCCGAGGAGGACGACCTCCGAATCCGCCTCGTCATCGAGAAGGAGAAGATTCGGGAGCTCCACCCCTGCGCCCGCGACGCCCGCCGCGTGTCGGCGGAGTTGTGGCTCGAGTGGTTCGACAGCAGCATCCGCCCCGGCGAGGATGATGGGCTGCGGCGGCTTGGGTTCCTCGCATACTGGCTTGCTTTCTTCGTTACTCCGCGGCTGCGGCCAAGGAGCGGGGAGCTGCCGGATTGCACGTTTGCGCTCGCCGCTCGTCTTAGTCTTGGAGAGCGTATTGCCCTTGGCCCGGCAATGGTAGCGAATCTGTATGCCGATATGGATAGGATTGTTGCTTCTGGGGTAATGGAGGGGGTCAGCGGGCGTGTTGAAACCTGGGGCCCTCTCTTGCTTCTTCAGGTGTGGATATGGGAACGTTTCGACTGCTTGCGCCCACCGCCACTGAAGGCTCCACCGTTCCCTGTCTCGAATGCTCGAGTGCACCTTTGGAGCCGGAGGAAGAGGACAACCACATCGGAGGAGGCTCAACAGGTTTTCCAGGATGAGGCATGCTTTCTGTGGAGGCCATACCAGTACAACTCGCTGAACTGGACGCAACCTGAGTGGTTCAATGAGAAAACCACTACAGCGAGTTCGGAAAGTAAACATAAGCCAAAGTGGTTGGATGATTACAGTGCAATGATTACGCAAGCAGTGTTGACTGGATGGTTTGGTGATGGGATGGCCAATTCAGTAATGTATAATCCACACCTTGTTGCTAGGCAATTTGGTTATGATCAGGATTTTCCTGTATCTATTATACATGGTTCTGATTCCAGTGGAATTGAGGTTTGGGTACCAAGTATTGGTAGACATGGGGTTGCTAGCAAGGATTATGCTGCATGGTGGAATGCACGTTTCGAGAGGCATCAGGAAGGCAATCAACATGGTTGTGGGATGATGTTAAACAAGGAAAATAAGACGAGCGCATTGCCTCTGAATACAGGTCTGATAAGTGTGGTACAGATGGCTGTTGATCATTTTAGAAAAGGCACCAAGCAAGAGAACAGTAAATGCATGACAAAAAGGCAGTTAACACAACTGGGTAATGTTGCTCCCAACAACGAATGGAATCAAGTTGTCCTAGGCCTTAGTGCATATGATTTTGACCGTAGTCAAAATGCAGTGAAAAGAAAAGATGCCATTAAAAAAATACGAGATAAATCAACCGATGTGAATAGGAAGAAGAAGAAAAATAAGGTATTTGCTAATGAGGGCGGCGAGTGTCCCCAATTCTATGATTGGGTGCCGCTAACTGTGAGTAACAATGAAAATAATTCATTGCAACTTGATGTTCAGGAGCGCTCTGGACCACAGGAAGATTCCAACTCTTCTAGTAAGAGATGTGATGAACTGGCACAACTTAATAATGATGAATGTATTGTTCTTGAACCACCTGCTAAGAATTGTGAAGTAATAAATCTTGACGATGAGGAGGAACAAAGTGTCCCTAATCCCAAACATCATGATAGGCAGCTTGTACTTGAGCTAGAAGAGTTTGTGCGCTCTGGGCTTCTGTCACAACGCGAGGAATGTTCTGATGAGGATGAGGAAGATAGAAGAAACCGAGATATACTGAAGGATAATAAAGATGACCCTTTTTCTGAAGCAGCCAGGAGGGAATACCCTCTGTTCTTTGAGTTCATTCCGCAGAAACCACATTACCGAGGGTTGCTGAACAATGATGAAGCTCTAGGAGATCTAGCCTACAGTGGACTATGGTTTTTGCTGGTTGGTTTAGCTAAGGAGGTGCTCAAGACATCATGTGATACAGATGCTTCTGAGATTGTTTGTTTGATGAAAAAGGCTCAGGAATTGGAGCAACTAGGGTTCAATGTGAAACATCTCATTGCCCGCTTGAAGGAGCCACAAAGCCGTCTTAGGCTGCTTCAAGATTCTATTACAAGGCTTGAGGATGCTCGGAAAAAAGAGCATGAAGCAAACAGGTTACAATCACTGTCAAGCCATCTGAGTAAACTGAAACACAATATACAAACAATGGAGTGGCATTTGGACGCAAAGAATCAAGCTTCTAGTTCATCTATATTCAGTTTAGAGAAGGAAGTAGAAGCTGCTGAAAAATATTGTCAGGCAATGAAGGATGAAGTGGTTGCATTGAAAATGAATCATTCAAACCTTTGA

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Protein seq

MPPSDDGGDPSFLPIPLLSRVTTLPPPAPSSPPHPIPPLSFRHLSPCARWSAWVAAALRDPAFAPLLRSAGIADAVGASAATVNPDRGALAALLSFWDPASHAFRLPAGAATFSLEDALLLAGLPPTGAPLDRPLTPEEDDLRIRLVIEKEKIRELHPCARDARRVSAELWLEWFDSSIRPGEDDGLRRLGFLAYWLAFFVTPRLRPRSGELPDCTFALAARLSLGERIALGPAMVANLYADMDRIVASGVMEGVSGRVETWGPLLLLQVWIWERFDCLRPPPLKAPPFPVSNARVHLWSRRKRTTTSEEAQQVFQDEACFLWRPYQYNSLNWTQPEWFNEKTTTASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSIIHGSDSSGIEVWVPSIGRHGVASKDYAAWWNARFERHQEGNQHGCGMMLNKENKTSALPLNTGLISVVQMAVDHFRKGTKQENSKCMTKRQLTQLGNVAPNNEWNQVVLGLSAYDFDRSQNAVKRKDAIKKIRDKSTDVNRKKKKNKVFANEGGECPQFYDWVPLTVSNNENNSLQLDVQERSGPQEDSNSSSKRCDELAQLNNDECIVLEPPAKNCEVINLDDEEEQSVPNPKHHDRQLVLELEEFVRSGLLSQREECSDEDEEDRRNRDILKDNKDDPFSEAARREYPLFFEFIPQKPHYRGLLNNDEALGDLAYSGLWFLLVGLAKEVLKTSCDTDASEIVCLMKKAQELEQLGFNVKHLIARLKEPQSRLRLLQDSITRLEDARKKEHEANRLQSLSSHLSKLKHNIQTMEWHLDAKNQASSSSIFSLEKEVEAAEKYCQAMKDEVVALKMNHSNL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.031791 0.0 0.238098

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0194300 SBH 0.173274 0.355395 0.293087
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g11820 SBH 0.110252 0.224906 0.070988
Nipponbare | IRGSP 1.0 | RAP-db Os10g0194300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0004780 SBH 0.131063 0.899192 1.093113
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0005140 SBH 0.044314 0.739459 0.643551
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0005130 SBH 0.0 0.769046 0.872715
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0005470 SBH 0.073798 0.060300 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0005180 SBH 1.804315 2.366491 2.646402
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0109100 SBH 0.8574315 1.791613 2.6331675
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0005370 SBH 0.0 0.0 0.359670
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0117400 SBH 0.6441485 1.5163385 7.068504
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0005220 SBH 0.028577 0.041637 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0005270 SBH 0.062897 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0005410 SBH 0.0 4.356162 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0005140 RBH 0.106793 0.0 0.177690
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0005510 SBH 0.0 0.533826 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G005310 SBH 0.053903 0.306805 0.489607
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0005360 SBH 0.491263 1.359077 2.165133
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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