Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0005220 | OGI:10021620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:7254699-7257597 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aattagtttgtgttttaataagattagacacgacctttttttactgcagaaaaacctgtctttgttatagttctgagcatagcattggcaaattggtacgtattgcaccatagttgtataaaataacttgtgagtgttgaaagtaaaaaaataactggtgcaaagtatttgatagatggttaggaaaatattaatagtattttctgaaggcccatattccacagatggacttgaaaaactctacaatctacatcaggaagcatccatttcattcatacaatcgatgctagagcaacccatagctccatggtcaaaggtttgaatgattcattttcaatgcaaccacttcatccttcattgcctgacaatatttttcagcagcttctacttccttctctaaactgaatatagatgaactagaagcttgattctttgcgtccaaatgccactccattgtttgtatattgtgtttcagtttactcagatggcttgacagtgattgtaacctgtttgcttcatgctcttttttccaagcatcctcaagccttgtaatagaatcttgaagcagcctaagacggctttgtggctccttcaagcgggcaatgagatgtttcacattgaaccctagttgctccaattcctgagccttttttatcaaacaaacaatctcagaagcatctgtatcacatgatgtcttgagcacctccttagctaaaccaaccagcaaaaaccatagtccactgtaggctagatctcctagagcttcatcattgttcagcaaccctcggtaatgtggtttctgcggaatgaactcaaagaacagagggtattccctcctggctgcttcagaaaaagggtcatctttattatccttcagtatatctcggtttcttctatcttcctcatcctcatcagaacattcctcgcgttgtgacagaagcccagagcgcacaaactcttctagctcaagtacaagctgcctatcatgatgtttgggattagggacactttgttcctcctcatcgtcaagatttattacttcacaattcttagctggtggttcaagaacaatacattcatcattattaagttgtgccagttcatcacatctcttactagaagagttggaatcttcctgtggtccagagcgctcctgaacatcaagttgcaatgaattattttcattgttactcacagttagcggcacccaatcatagaattggggacactcgccgccctcattagcaaataccttatttttcttcttcttcctattcacatcggttgatttatctcgtatttttttaatggcatcttttcttttcactgcattttgactacggtcaaaatcatatgcactaaggcctaggacaacttgattccattcgttgttgggagcaacattacccagttgtgttaactgcctttttgtcatgcatttactgttctcttgcttggtgccttttctaaaatgatcaacagccatctgtaccacacttatcagacctgtattcagaggcaatgcgctcgtcttattttccttgtttaacatcatcccacaaccatgttgattgccttcctgatgcctctcgaaacgtgcattccaccatgcagcataatccttgctagcaaccccatgtctaccaatacttggtacccaaacctcaattccactggaatcagaaccatgtataatagatacaggaaaatcctgatcataaccaaattgcctagcaacaaggtgtggattatacattactgaattggccatcccatcaccaaaccatccagtcaacactgcttgcgtaatcattgcactgtaatcatccaaccactttggcttatgtttactttccgaactcgctgtagtggttttctcattgaaccactcaggttgcgtccagttcagcgagttgtactggtatggcctccacagaaagcatgcctcatcctggaaaacctgttgagcctcctccgatgtggttgtcctcttcctccggctccaaaggtgcactcgagcattcgagacagggaacggtggagccttcagtggcggtgggcgcaagcagtcgaaacgttcccatatccacacctgaagaagcaagagagggccccaggtttcaacacgcccgctgaccccctccattaccccagaagcaacaatcctatccatatcggcatacagattcgctaccattgccgggccaagggcaatacgctctccaagactaagacgagcggcgagcgcaaacgtgcaatccggcagctccccgctccttggccgcagccgcggagtaacgaagaaagcaagccagtatgcgaggaacccaagccgccgcagcccatcatcctcgccggggcggatgctgctgtcgaaccactcgagccacaactccgccgacacgcggcgggcgtcgcgggcgcaggggtggagctcccgaatcttctccttctcgatgacgaggcggattcggaggtcgtcctcctcgggggtgaggggccggtccagcggggcgccggtcgggggcaggccggcgaggaggagcgcgtcctcgagggagaacgtggcggccccggcggggaggcggaaggcgtgggaggccgggtcccagaacgagagcagcgccgctagggcgccgcggtcgggattgacggtggcggcggacgccccgacggcgtcggcgatgccggcggagcggaggagcggcgcgaacgcggggtcgcggagggcggcggcgacccaggcggaccaccgcgcgcagggggagaggtggcggaaggagagcggcgggatggggtggggcggcgaggagggggccggcggagggagggtcgtgacgcgggagaggagggggatggggaggaaggaggggtctcctccgtcgtcggagggtggcat
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| CDS seq | atgccaccctccgacgacggaggagacccctccttcctccccatccccctcctctcccgcgtcacgaccctccctccgccggccccctcctcgccgccccaccccatcccgccgctctccttccgccacctctccccctgcgcgcggtggtccgcctgggtcgccgccgccctccgcgaccccgcgttcgcgccgctcctccgctccgccggcatcgccgacgccgtcggggcgtccgccgccaccgtcaatcccgaccgcggcgccctagcggcgctgctctcgttctgggacccggcctcccacgccttccgcctccccgccggggccgccacgttctccctcgaggacgcgctcctcctcgccggcctgcccccgaccggcgccccgctggaccggcccctcacccccgaggaggacgacctccgaatccgcctcgtcatcgagaaggagaagattcgggagctccacccctgcgcccgcgacgcccgccgcgtgtcggcggagttgtggctcgagtggttcgacagcagcatccgccccggcgaggatgatgggctgcggcggcttgggttcctcgcatactggcttgctttcttcgttactccgcggctgcggccaaggagcggggagctgccggattgcacgtttgcgctcgccgctcgtcttagtcttggagagcgtattgcccttggcccggcaatggtagcgaatctgtatgccgatatggataggattgttgcttctggggtaatggagggggtcagcgggcgtgttgaaacctggggccctctcttgcttcttcaggtgtggatatgggaacgtttcgactgcttgcgcccaccgccactgaaggctccaccgttccctgtctcgaatgctcgagtgcacctttggagccggaggaagaggacaaccacatcggaggaggctcaacaggttttccaggatgaggcatgctttctgtggaggccataccagtacaactcgctgaactggacgcaacctgagtggttcaatgagaaaaccactacagcgagttcggaaagtaaacataagccaaagtggttggatgattacagtgcaatgattacgcaagcagtgttgactggatggtttggtgatgggatggccaattcagtaatgtataatccacaccttgttgctaggcaatttggttatgatcaggattttcctgtatctattatacatggttctgattccagtggaattgaggtttgggtaccaagtattggtagacatggggttgctagcaaggattatgctgcatggtggaatgcacgtttcgagaggcatcaggaaggcaatcaacatggttgtgggatgatgttaaacaaggaaaataagacgagcgcattgcctctgaatacaggtctgataagtgtggtacagatggctgttgatcattttagaaaaggcaccaagcaagagaacagtaaatgcatgacaaaaaggcagttaacacaactgggtaatgttgctcccaacaacgaatggaatcaagttgtcctaggccttagtgcatatgattttgaccgtagtcaaaatgcagtgaaaagaaaagatgccattaaaaaaatacgagataaatcaaccgatgtgaataggaagaagaagaaaaataaggtatttgctaatgagggcggcgagtgtccccaattctatgattgggtgccgctaactgtgagtaacaatgaaaataattcattgcaacttgatgttcaggagcgctctggaccacaggaagattccaactcttctagtaagagatgtgatgaactggcacaacttaataatgatgaatgtattgttcttgaaccaccagctaagaattgtgaagtaataaatcttgacgatgaggaggaacaaagtgtccctaatcccaaacatcatgataggcagcttgtacttgagctagaagagtttgtgcgctctgggcttctgtcacaacgcgaggaatgttctgatgaggatgaggaagatagaagaaaccgagatatactgaaggataataaagatgaccctttttctgaagcagccaggagggaataccctctgttctttgagttcattccgcagaaaccacattaccgagggttgctgaacaatgatgaagctctaggagatctagcctacagtggactatggtttttgctggttggtttagctaaggaggtgctcaagacatcatgtgatacagatgcttctgagattgtttgtttgataaaaaaggctcaggaattggagcaactagggttcaatgtgaaacatctcattgcccgcttgaaggagccacaaagccgtcttaggctgcttcaagattctattacaaggcttgaggatgcttggaaaaaagagcatgaagcaaacaggttacaatcactgtcaagccatctgagtaaactgaaacacaatatacaaacaatggagtggcatttggacgcaaagaatcaagcttctagttcatctatattcagtttagagaaggaagtagaagctgctgaaaaatattgtcaggcaatgaaggatgaagtggttgcattgaaaatgaatcattcaaacctttga
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| Protein seq | MPPSDDGGDPSFLPIPLLSRVTTLPPPAPSSPPHPIPPLSFRHLSPCARWSAWVAAALRDPAFAPLLRSAGIADAVGASAATVNPDRGALAALLSFWDPASHAFRLPAGAATFSLEDALLLAGLPPTGAPLDRPLTPEEDDLRIRLVIEKEKIRELHPCARDARRVSAELWLEWFDSSIRPGEDDGLRRLGFLAYWLAFFVTPRLRPRSGELPDCTFALAARLSLGERIALGPAMVANLYADMDRIVASGVMEGVSGRVETWGPLLLLQVWIWERFDCLRPPPLKAPPFPVSNARVHLWSRRKRTTTSEEAQQVFQDEACFLWRPYQYNSLNWTQPEWFNEKTTTASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSIIHGSDSSGIEVWVPSIGRHGVASKDYAAWWNARFERHQEGNQHGCGMMLNKENKTSALPLNTGLISVVQMAVDHFRKGTKQENSKCMTKRQLTQLGNVAPNNEWNQVVLGLSAYDFDRSQNAVKRKDAIKKIRDKSTDVNRKKKKNKVFANEGGECPQFYDWVPLTVSNNENNSLQLDVQERSGPQEDSNSSSKRCDELAQLNNDECIVLEPPAKNCEVINLDDEEEQSVPNPKHHDRQLVLELEEFVRSGLLSQREECSDEDEEDRRNRDILKDNKDDPFSEAARREYPLFFEFIPQKPHYRGLLNNDEALGDLAYSGLWFLLVGLAKEVLKTSCDTDASEIVCLIKKAQELEQLGFNVKHLIARLKEPQSRLRLLQDSITRLEDAWKKEHEANRLQSLSSHLSKLKHNIQTMEWHLDAKNQASSSSIFSLEKEVEAAEKYCQAMKDEVVALKMNHSNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0005220 | OsLima_10g0005220.01 | Chr10 | 7254699 | 7257597 | - | NAM | ||
| CDS seq | atgccaccctccgacgacggaggagacccctccttcctccccatccccctcctctcccgcgtcacgaccctccctccgccggccccctcctcgccgccccaccccatcccgccgctctccttccgccacctctccccctgcgcgcggtggtccgcctgggtcgccgccgccctccgcgaccccgcgttcgcgccgctcctccgctccgccggcatcgccgacgccgtcggggcgtccgccgccaccgtcaatcccgaccgcggcgccctagcggcgctgctctcgttctgggacccggcctcccacgccttccgcctccccgccggggccgccacgttctccctcgaggacgcgctcctcctcgccggcctgcccccgaccggcgccccgctggaccggcccctcacccccgaggaggacgacctccgaatccgcctcgtcatcgagaaggagaagattcgggagctccacccctgcgcccgcgacgcccgccgcgtgtcggcggagttgtggctcgagtggttcgacagcagcatccgccccggcgaggatgatgggctgcggcggcttgggttcctcgcatactggcttgctttcttcgttactccgcggctgcggccaaggagcggggagctgccggattgcacgtttgcgctcgccgctcgtcttagtcttggagagcgtattgcccttggcccggcaatggtagcgaatctgtatgccgatatggataggattgttgcttctggggtaatggagggggtcagcgggcgtgttgaaacctggggccctctcttgcttcttcaggtgtggatatgggaacgtttcgactgcttgcgcccaccgccactgaaggctccaccgttccctgtctcgaatgctcgagtgcacctttggagccggaggaagaggacaaccacatcggaggaggctcaacaggttttccaggatgaggcatgctttctgtggaggccataccagtacaactcgctgaactggacgcaacctgagtggttcaatgagaaaaccactacagcgagttcggaaagtaaacataagccaaagtggttggatgattacagtgcaatgattacgcaagcagtgttgactggatggtttggtgatgggatggccaattcagtaatgtataatccacaccttgttgctaggcaatttggttatgatcaggattttcctgtatctattatacatggttctgattccagtggaattgaggtttgggtaccaagtattggtagacatggggttgctagcaaggattatgctgcatggtggaatgcacgtttcgagaggcatcaggaaggcaatcaacatggttgtgggatgatgttaaacaaggaaaataagacgagcgcattgcctctgaatacaggtctgataagtgtggtacagatggctgttgatcattttagaaaaggcaccaagcaagagaacagtaaatgcatgacaaaaaggcagttaacacaactgggtaatgttgctcccaacaacgaatggaatcaagttgtcctaggccttagtgcatatgattttgaccgtagtcaaaatgcagtgaaaagaaaagatgccattaaaaaaatacgagataaatcaaccgatgtgaataggaagaagaagaaaaataaggtatttgctaatgagggcggcgagtgtccccaattctatgattgggtgccgctaactgtgagtaacaatgaaaataattcattgcaacttgatgttcaggagcgctctggaccacaggaagattccaactcttctagtaagagatgtgatgaactggcacaacttaataatgatgaatgtattgttcttgaaccaccagctaagaattgtgaagtaataaatcttgacgatgaggaggaacaaagtgtccctaatcccaaacatcatgataggcagcttgtacttgagctagaagagtttgtgcgctctgggcttctgtcacaacgcgaggaatgttctgatgaggatgaggaagatagaagaaaccgagatatactgaaggataataaagatgaccctttttctgaagcagccaggagggaataccctctgttctttgagttcattccgcagaaaccacattaccgagggttgctgaacaatgatgaagctctaggagatctagcctacagtggactatggtttttgctggttggtttagctaaggaggtgctcaagacatcatgtgatacagatgcttctgagattgtttgtttgataaaaaaggctcaggaattggagcaactagggttcaatgtgaaacatctcattgcccgcttgaaggagccacaaagccgtcttaggctgcttcaagattctattacaaggcttgaggatgcttggaaaaaagagcatgaagcaaacaggttacaatcactgtcaagccatctgagtaaactgaaacacaatatacaaacaatggagtggcatttggacgcaaagaatcaagcttctagttcatctatattcagtttagagaaggaagtagaagctgctgaaaaatattgtcaggcaatgaaggatgaagtggttgcattgaaaatgaatcattcaaacctttga
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| Protein seq | MPPSDDGGDPSFLPIPLLSRVTTLPPPAPSSPPHPIPPLSFRHLSPCARWSAWVAAALRDPAFAPLLRSAGIADAVGASAATVNPDRGALAALLSFWDPASHAFRLPAGAATFSLEDALLLAGLPPTGAPLDRPLTPEEDDLRIRLVIEKEKIRELHPCARDARRVSAELWLEWFDSSIRPGEDDGLRRLGFLAYWLAFFVTPRLRPRSGELPDCTFALAARLSLGERIALGPAMVANLYADMDRIVASGVMEGVSGRVETWGPLLLLQVWIWERFDCLRPPPLKAPPFPVSNARVHLWSRRKRTTTSEEAQQVFQDEACFLWRPYQYNSLNWTQPEWFNEKTTTASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSIIHGSDSSGIEVWVPSIGRHGVASKDYAAWWNARFERHQEGNQHGCGMMLNKENKTSALPLNTGLISVVQMAVDHFRKGTKQENSKCMTKRQLTQLGNVAPNNEWNQVVLGLSAYDFDRSQNAVKRKDAIKKIRDKSTDVNRKKKKNKVFANEGGECPQFYDWVPLTVSNNENNSLQLDVQERSGPQEDSNSSSKRCDELAQLNNDECIVLEPPAKNCEVINLDDEEEQSVPNPKHHDRQLVLELEEFVRSGLLSQREECSDEDEEDRRNRDILKDNKDDPFSEAARREYPLFFEFIPQKPHYRGLLNNDEALGDLAYSGLWFLLVGLAKEVLKTSCDTDASEIVCLIKKAQELEQLGFNVKHLIARLKEPQSRLRLLQDSITRLEDAWKKEHEANRLQSLSSHLSKLKHNIQTMEWHLDAKNQASSSSIFSLEKEVEAAEKYCQAMKDEVVALKMNHSNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.028577 | 0.041637 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0194300 | RBH | 0.173274 | 0.355395 | 0.293087 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g11820 | RBH | 0.110252 | 0.224906 | 0.070988 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0194300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0004780 | RBH | 0.131063 | 0.899192 | 1.093113 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005140 | RBH | 0.044314 | 0.739459 | 0.643551 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005130 | RBH | 0.0 | 0.769046 | 0.872715 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005470 | RBH | 0.073798 | 0.060300 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005180 | RBH | 1.804315 | 2.366491 | 2.646402 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0109100 | RBH | 0.8574315 | 1.791613 | 2.6331675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005370 | RBH | 0.0 | 0.0 | 0.359670 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0117400 | RBH | 0.6441485 | 1.5163385 | 7.068504 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005270 | RBH | 0.062897 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005410 | RBH | 0.0 | 4.356162 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005140 | RBH | 0.106793 | 0.0 | 0.177690 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005510 | RBH | 0.0 | 0.533826 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005310 | RBH | 0.053903 | 0.306805 | 0.489607 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005360 | RBH | 0.491263 | 1.359077 | 2.165133 |
