Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0056900 | OGI:10013860 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg427:292122-298332 | ||||||||
| Gene Symbol | RLCK378, OsRLCK378 | ||||||||||
| DNA seq | GGAGAAACCATGCATAAACTGTGTCTGTAGTGCAAGAGTACAACATAAGCCTCGATAACGCTACTTGACAAGATCTGATTTTAATGCACAATATACCATAACTACATATATGTTGAACATGATAATTTCAAATCATGTTCCATATGTAACGTTGTTTTGCACATGCATGAACATTCCAGAAAATGATCTGTATGTGATAATTCTATTTAATTACTACGAGCTCTCTTAGCCATGTAGTgaagacgctccgctatatctgtcatttctggtctttgatccacctcaagatttagacattgcgcaatcatgcctgctagattaacaagaagctcatgatcatttgccgctgcaatttcctcatcaacaaactccgtcactgtcttcccacttgtgtaagcatcaagaaaattccgaagtaagctgtttttgtcggagtgtgaggccttcttccttgtaatgagctccaagagaacaactccaaaactataaacatcgctcttgtcggttagaagacctgtctgaaaatacactggatccatataactcatatcaccaatgacagacattgtgtgatcattatctatggcgagcaaccttgatataccgaagtcggagatctttggtagaaggtcatcatttAaaagtatattagctggtttcacatcaccatgcaggatcgtagtgcttgtttttgaatgcatataagctagaccttctgctgattcggcagcaatctgcaaccgttgatccaaattgagaggcagtctgttgctgccatggagaacgtcttcgaggcttcctttggagacaaactcatagaccAaaattgggatatcaacctctaggcaacaaccgatgagcttgacaatgttcttgtgaatgactcgagattgaatgatgacttcatttgcaaattggtcTttttttgccaaattaacattaatgggcttcttcactgcaactaactgattgttatttccaatatgccccttgtagacctcaccgaagccaccctttccaatgacattggcaTttttcaatattggcttaagatcctcctttttgaacagcttgatattattgaccttttccaatatagggcctccattcttttcgaaaaattctttcgtttttcttttctctctacgaagtagtgcaatgaataccaataatgctatgatgaaaagaccacctagcacacctacatagtaaaataatattatAttagaacataaacatctttattcaatttgatAaacggtagaacgatgattttagttgaaataattctatgaatagcaattaaatatgtgtcgtggccacatgcatcctctatactgcatctattacaaatcacctcttggatttgtttaatactcttccctcatcgacaaatatagtgattttcactatctctattcttccaccaatataagggattctagggtactacttatcccatcaatcacattaatttcattaaaaaattcatattatcctcaactacactcacacatccagtatctcatttaacaaggggcatcgttgtttttctctgcatgcccaaagtccctagtatttgttgatggagggaatacacaaaagaccacccatatgtttttttttctttggcttctaaattatagtcgtacattgaatggatccaatcatatgacaattttttttgccatgtatatatgtatccaatgtgttaaatgTtatagtactttagtgtaaacactgttatatttttcttactataaagtaagtttaggacatatgTttgatgcacatgcatgcgcgcctaatgcatgttttatactttttgttgatatcgttctcgttgaagtgaactgataacTtgtagtaactgcatgaagcaaattaaatattcccacctagtattgtgtagttattgaataccgcaattcaatattattgatgctcattgcaataacactatctcatatatattcatcagtaatgtatgcatgacaaatacaaaaaattcacacaatcatgtactgttaaattaatcaaaattttcacataataaTtttgtatgtatttcagtgagttgaatacccactcaaactttccaaagtatataaaactaatattaacggcattattataccaagtggacgatgagatcgaatactcacacatacctactacgatctgtgcagggagaggaaaatttggggtgcaccgttccttgaatggatcagcactggaatgacccttgggacaccagcattcaaaggaacccggcttgttccggcagcgaccatagcaagtgttcgggagttgacactcatcaatatctgtatcgaacatcaagtatacccaacgtaacaaactaatcatttatccatgcctaccatataacagacatatgcggtttggaatatctaatataacactctagcacacttcatctagTtttgtgacatttcatgtacgacactctagttttatggctttaccgtaggacactctaacttgtggtttttcccgaaagacactctaaccattattttaatatgtttccttcaaattgagagataaaactttgtgaggaaaagaaaacgagtttacccaccttgcatattcaaatctaaatgcatttttgctgaatttaaacataTtttggaaaactcaaaacttgtcacaaaataattgaaataaaaagcattcaatattttcAaaaacatgaaatttgaaatattattttctgagattttagaaatttatcataaaatatttttatttcgtaatttgggacaaTtttaatattttgtactttttagaaccagctaatatttgttaaaatttgaatatgctaggtgaatcaagggtaaaataatctatttgaagggtatatattaaaataatggaccaagtgtcttttagtgtccagttacaaagccgcaaacctaaaatgccgtagatcaaatgcgacaaatttagagtgtcctatataatggacttttattctaagtttaggggtatataagattgtttcccctaattaagaaatatatctatacttgaaagcgcatggcctctacaatctctaatacttgttcataatcaataacctttgagcacatagtctctttagtcataaataaactagtgttgttttaaacttttcaacattagccatgattatgaacactcaattattttgcataaatcaaaaaccagtgcctcagtgtaatattatgaattatattctcataataaatttttttgtgtcattttcatgtgcccaaaacctatattataaccaacaatgatggggaaaattagctgttattggttgagctaattttaaaacgtcggagggagatgacatgtctatgtggtagatgtaagaaaaaggactacgtagatcaatgcatattaaatattgttacgatagatggatatatgttgaaattaatattgtgaaatgatatggaggatgatgatttgacatgcttacatattgaactctatgatgttatatttatatagaatgtaataaattatatatgatgtgatattggtcgcatgagatttaagatatagtattaccccatcccaaaatattgctatctaggatgggatttgacccagcctaggacactaatttgcacagaccgtccggattagttgaaggccaaatgggtctattcagattagttgtcctaggtagcaataTtttgggatggaggaaatagttggtagtggttgaggatataaacatgctgagatttaacatgaagtggattgtaagtaggaatgaaggggcttttaactatttgccacttttagatttggcaaataactatttgtcacccatatctcaatgacatatgggtccacatgtgtctatgacatgtggatccagtggtaaaaagttaattgccacatctaaatgtggcaaatggttaaatatctcaggaatgAaaacatcggaaatgttcagaaaacgtctcaaccatttcaatacccatatttgtttgaaaatggtaaagccggaaaaaaagatcgaaaatatcagaaaaccaaaaatggtctatacggacggcaacagcaacacgtcggtatggattggaagcagataacAaatatcagaaacattgaactataaaatcgcacatttaactgtgcataacaatataatatgacaaaataaatttgaggtaaactatctaaattataaattttctccTtttcatattgtactcaaattagggatttggttgaggagttgatgggtctctaaagcatgagtcaaacaaagaattaggccataaatactagtgtatttagaaatatggcaagaacgggtaattacagtaagaacgcagtaaaagttggtaacgattgatacgcagcaaaatcatttcatatctatttccatatgtttttaccacttccattttcgttttcgttggtaaatgtttccacctagcttggccggtttaaatcggaaacacacgccagtcgattgggaatttttcataatcatttccacccctagtcataactatattgaaggcataaataagttcataatttagactaaggaatttaaaccactctacgtttaaactatagtgtgtgtctatatatacacacacacacatctctacaagttctttggagttggatccaagaatcaacaaaggcacttcctgggatggaaTtttttttagaatgatgaaagtactccctccatccataaatataagtccttccaagtttttttttttcgagagatcaagaataaggagaaaagatgggtgatcggttttcagtgtcgattgggtcaaaaattaattaaaagagggatggttaggtaggagtagtactcaacgcatttattcatttcacattaagataataaatttaaactttagtaatacttacttttattttcacaatataagatatttaaacttttttcccgtcaaacttctttgagtttgacagaatttataaaagcaatattttcaacacaaaacaaatatattatcaagatatattaattatttttaattttgggccaagtttataagaaaattaataacatccacaacaacaaattagtttcattagatttaacattaattatattttgacaaactttgggtttgtgtttaaaatagtgctaTttttttctattagtttggataaacttaaaataagtttgactagaaaaaaaatcagaacatctcataatataatacagatggagtatttttttTCttggacgaagtggtacgtagtaattaacaaacttaccgatgcaaccattggggatatagggattgccctcatatcccttattgcatttacaaacgtatcctggtccgttggttgagtcatgacagtcgctgttgtcgctgacgcaggcgtagccgccgacctgcgccgccgtcttcctcgcctggctgcacgtcaggttgtcgcggatggcccagtccagcgtcaccggcatggtccggctcttgtccatcctcaggtcggcggtgctgaaggtgtagttggtcttctccaccaggaaggcgtagtcgcaggggctgtagttgaggtttctctcatgggggtagttatcgaaactcaccatgttgtccgagatgtccggcgggatgtcaacctggcagcagccgacgccgtcgcattcgctgctcaccgcgctgctagaatcgttgcagtagcacaggcagccggtgtacgaggcgcggtcgtagtcactgcccacgaccccggaccggcgctggctcccgacatagcccagcgtgttgcagccgaggacgacgaggtggttgcgggtgtgtgagatgcggtacataccgtcccggttgaaatccaccatggactcatcgtagctgtccacctggtcggaggagttgaagcactgccatccgatgggcagcgtcacgcgtgcctccgacgaatcgatggagagatcgctgatcgggatgagttggttgccgctgccggcgaggaacggcgcatcaTttttgcagatgatctcgaggcctggccggaagcagccggcgccgatgccgaacgggtaagggatgcccacgccgccgcaattgcccgggcaaccggccatcgtggtctcaccaacaacagccgacggcgccattagcagcagcagctgctgcaaaactaaggcgatgatcaatggcgttgtcgacgacat
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| CDS seq | atgtcgtcgacaacgccattgatcatcgccttagttttgcagcagctgctgctgctaatggcgccgtcggctgttgttggtgagaccacgatggccggttgcccgggcaattgcggcggcgtgggcatcccttacccgttcggcatcggcgccggctgcttccggccaggcctcgagatcatctgcaaaaAtgatgcgccgttcctcgccggcagcggcaaccaactcatcccgatcagcgatctctccatcgattcgtcggaggcacgcgtgacgctgcccatcggatggcagtgcttcaactcctccgaccaggtggacagctacgatgagtccatggtggatttcaaccgggacggtatgtaccgcatctcacacacccgcaaccacctcgtcgtcctcggctgcaacacgctgggctatgtcgggagccagcgccggtccggggtcgtgggcagtgactacgaccgcgcctcgtacaccggctgcctgtgctactgcaacgattctagcagcgcggtgagcagcgaatgcgacggcgtcggctgctgccaggttgacatcccgccggacatctcggacaacatggtgagtttcgataactacccccatgagagaaacctcaactacagcccctgcgactacgccttcctggtggagaagaccaactacaccttcagcaccgccgacctgaggatggacaagagccggaccatgccggtgacgctggactgggccatccgcgacaacctgacgtgcagccaggcgaggaagacggcggcgcaggtcggcggctacgcctgcgtcagcgacaacagcgactgtcatgactcaaccaacggaccaggatacgtttgtgtgctaggtggtcttttcatcatagcattattggtattcattgcactacttcgtagagagaaaagaaaaacgaaagaatttttcgaaaagaatggaggccctatattggaaaaggtcaataatatcaagctgttcaaaaaggaggatcttaagccaatattgaaaaAtgccaatgtcattggaaagggtggcttcggtgaggtctacaaggggcatattggaaataacaatcagttagttgcagtgaagaagcccattaatgttaatttggcaaaaaaAgaccaatttgcaaatgaagtcatcattcaatctcgagtcattcacaagaacattgtcaagctcatcggttgttgcctagaggttgatatcccaatttTggtctatgagtttgtctccaaaggaagcctcgaagacgttctccatggcagcaacagactgcctctcaatttggatcaacggttgcagattgctgccgaatcagcagaaggtctagcttatatgcattcaaaaacaagcactacgatcctgcatggtgatgtgaaaccagctaatatactttTaaatgatgaccttctaccaaagatctccgacttcggtatatcaaggttgctcgccatagataatgatcacacaatgtctgtcattggtgatatgagttatatggatccagtgtattttcagacaggtcttctaaccgacaagagcgatgtttatagttttggagttgttctcttggagctcattacaaggaagaaggcctcacactccgacaaaaacagcttacttcggaattttcttgatgcttacacaagtgggaagacagtgacggagtttgttgatgaggaaattgcagcggcaaatgatcatgagcttcttgttaatctagcaggcatgattgcgcaatgtctaaatcttgaggtggatcaaagaccagaaatgacagatatagcggagcgtcttcACTACATGGCTAAGAGAGCTCGTAGTAATTAA
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| Protein seq | MSSTTPLIIALVLQQLLLLMAPSAVVGETTMAGCPGNCGGVGIPYPFGIGAGCFRPGLEIICKNDAPFLAGSGNQLIPISDLSIDSSEARVTLPIGWQCFNSSDQVDSYDESMVDFNRDGMYRISHTRNHLVVLGCNTLGYVGSQRRSGVVGSDYDRASYTGCLCYCNDSSSAVSSECDGVGCCQVDIPPDISDNMVSFDNYPHERNLNYSPCDYAFLVEKTNYTFSTADLRMDKSRTMPVTLDWAIRDNLTCSQARKTAAQVGGYACVSDNSDCHDSTNGPGYVCVLGGLFIIALLVFIALLRREKRKTKEFFEKNGGPILEKVNNIKLFKKEDLKPILKNANVIGKGGFGEVYKGHIGNNNQLVAVKKPINVNLAKKDQFANEVIIQSRVIHKNIVKLIGCCLEVDIPILVYEFVSKGSLEDVLHGSNRLPLNLDQRLQIAAESAEGLAYMHSKTSTTILHGDVKPANILLNDDLLPKISDFGISRLLAIDNDHTMSVIGDMSYMDPVYFQTGLLTDKSDVYSFGVVLLELITRKKASHSDKNSLLRNFLDAYTSGKTVTEFVDEEIAAANDHELLVNLAGMIAQCLNLEVDQRPEMTDIAERLHYMAKRARSN |
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| Function | Wall-associated receptor kinase 4 [UniProtKB/Swiss-Prot:Q9LMN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056900 | OsLiXu_Ung0056900.01 | ChrUN-Ctg427 | 292122 | 298332 | - | NAM | ||
| CDS seq | atgtcgtcgacaacgccattgatcatcgccttagttttgcagcagctgctgctgctaatggcgccgtcggctgttgttggtgagaccacgatggccggttgcccgggcaattgcggcggcgtgggcatcccttacccgttcggcatcggcgccggctgcttccggccaggcctcgagatcatctgcaaaaAtgatgcgccgttcctcgccggcagcggcaaccaactcatcccgatcagcgatctctccatcgattcgtcggaggcacgcgtgacgctgcccatcggatggcagtgcttcaactcctccgaccaggtggacagctacgatgagtccatggtggatttcaaccgggacggtatgtaccgcatctcacacacccgcaaccacctcgtcgtcctcggctgcaacacgctgggctatgtcgggagccagcgccggtccggggtcgtgggcagtgactacgaccgcgcctcgtacaccggctgcctgtgctactgcaacgattctagcagcgcggtgagcagcgaatgcgacggcgtcggctgctgccaggttgacatcccgccggacatctcggacaacatggtgagtttcgataactacccccatgagagaaacctcaactacagcccctgcgactacgccttcctggtggagaagaccaactacaccttcagcaccgccgacctgaggatggacaagagccggaccatgccggtgacgctggactgggccatccgcgacaacctgacgtgcagccaggcgaggaagacggcggcgcaggtcggcggctacgcctgcgtcagcgacaacagcgactgtcatgactcaaccaacggaccaggatacgtttgtgtgctaggtggtcttttcatcatagcattattggtattcattgcactacttcgtagagagaaaagaaaaacgaaagaatttttcgaaaagaatggaggccctatattggaaaaggtcaataatatcaagctgttcaaaaaggaggatcttaagccaatattgaaaaAtgccaatgtcattggaaagggtggcttcggtgaggtctacaaggggcatattggaaataacaatcagttagttgcagtgaagaagcccattaatgttaatttggcaaaaaaAgaccaatttgcaaatgaagtcatcattcaatctcgagtcattcacaagaacattgtcaagctcatcggttgttgcctagaggttgatatcccaatttTggtctatgagtttgtctccaaaggaagcctcgaagacgttctccatggcagcaacagactgcctctcaatttggatcaacggttgcagattgctgccgaatcagcagaaggtctagcttatatgcattcaaaaacaagcactacgatcctgcatggtgatgtgaaaccagctaatatactttTaaatgatgaccttctaccaaagatctccgacttcggtatatcaaggttgctcgccatagataatgatcacacaatgtctgtcattggtgatatgagttatatggatccagtgtattttcagacaggtcttctaaccgacaagagcgatgtttatagttttggagttgttctcttggagctcattacaaggaagaaggcctcacactccgacaaaaacagcttacttcggaattttcttgatgcttacacaagtgggaagacagtgacggagtttgttgatgaggaaattgcagcggcaaatgatcatgagcttcttgttaatctagcaggcatgattgcgcaatgtctaaatcttgaggtggatcaaagaccagaaatgacagatatagcggagcgtcttcACTACATGGCTAAGAGAGCTCGTAGTAATTAA
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| Protein seq | MSSTTPLIIALVLQQLLLLMAPSAVVGETTMAGCPGNCGGVGIPYPFGIGAGCFRPGLEIICKNDAPFLAGSGNQLIPISDLSIDSSEARVTLPIGWQCFNSSDQVDSYDESMVDFNRDGMYRISHTRNHLVVLGCNTLGYVGSQRRSGVVGSDYDRASYTGCLCYCNDSSSAVSSECDGVGCCQVDIPPDISDNMVSFDNYPHERNLNYSPCDYAFLVEKTNYTFSTADLRMDKSRTMPVTLDWAIRDNLTCSQARKTAAQVGGYACVSDNSDCHDSTNGPGYVCVLGGLFIIALLVFIALLRREKRKTKEFFEKNGGPILEKVNNIKLFKKEDLKPILKNANVIGKGGFGEVYKGHIGNNNQLVAVKKPINVNLAKKDQFANEVIIQSRVIHKNIVKLIGCCLEVDIPILVYEFVSKGSLEDVLHGSNRLPLNLDQRLQIAAESAEGLAYMHSKTSTTILHGDVKPANILLNDDLLPKISDFGISRLLAIDNDHTMSVIGDMSYMDPVYFQTGLLTDKSDVYSFGVVLLELITRKKASHSDKNSLLRNFLDAYTSGKTVTEFVDEEIAAANDHELLVNLAGMIAQCLNLEVDQRPEMTDIAERLHYMAKRARSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0162836 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07556 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162836 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003480 | SBH | 0.0 | 4.538057 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003420 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003340 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003650 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003390 | SBH | 0.0 | 25.566597 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0067400 | SBH | 0.4557845 | 95.154453 | 0.0324195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003580 | SBH | 0.0 | 1.117110 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0074900 | SBH | 0.119091 | 15.243549 | 0.010911 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003420 | SBH | 0.0 | 0.218853 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003570 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003660 | RBH | 0.394088 | 12.960301 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003490 | SBH | 0.0 | 2.832500 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003630 | SBH | 0.0 | 158.876358 | 0.0 |
