Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0056220 | OGI:99054320 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg424:18636-22484 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCTGATCAGCAGCAGCCAGCCGCCGGCGAGCTGTGCCGTTCTTGATCACCGAGGCGATGGCGGCGGCGGCGGCGGTGCTGCTTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCCGGCGGCGAGTGCGGGAGGGTGGTGCACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCCAATGGCCTCGCCACGGCTCCTCCCATGGGGTAAGGAATAATAATCACTCACATCGTCACTAAGCATGCAGTAATTTAGCGTATCTAATTAATCCAATTTTAATTCTAATGGTTAAGCGTAGTTAGCTAGTAATAGTAATGGTTAATCTTTGCTGCTATCCTGTCATGTGAGCAATAGCGCCTTTCTGCTTGTGAGTCTGCATCTTGGTTAATTTAATCTTCTGAATTTCATGCAGCTGGAACAGCTGGAATCACTTCGCCTGCGACGGCAACGGAGAAGACGTCATCAGGGAGACTGGTAATTTCAGTTATTTTACGTAGGATGTTTTGATTTTGTCCTAAATCAAATTTCTTTTTAAGTTTGGTAAAACATATAGAGAAAATGTAATAATATTTCTATAACAAAAAATTAATTTTGTTAAATCCTTTTTTGCAATATATTTGTTTGGAGTAATAAACTTCTTTTTTTTTTCTGTCCGGCAGTGCCGTTTACAGCTGTACATTTGTACTAGTAGTATCCTACTACCAGCGTGAGCTGATTGACTGAAAGTCTGAAACAGAATAATTGATGAATTAGCCTTTGTTGAATCTTGATTAATTATTTTTCCCTTTTTTTTTCTGAGCAGCTGATGCACTTGTGTCAACCGGGCTTGCAGCTGCTGGCTACAAATACGTCAACATCGGTACGTGCGTCATGCATACGTCATTGCTTCTTGGACTAACCCTTTTTTTCCCTTTTCTTATTATTCTAGGATATTACTTGTCGTCAATGGCTAGAACTTGATTGAGTATAATAAAATCATGTGTTCTTTTTTTAAAAAACTTTTCTGATGATTATTTTTATTGTTATTATAGCATAATATTGTCAATGGCTTGAATTGGAGTATAATAAAATCATATTGTTAATAGAAAAATGATATGATTCTTTTGATATTCTATGATATTGTCGTCAATGGCTTGACCTGACTGAGTATAATAAAATCGTGTTTTTTTATATATATAAAAAAACTTTTCAGATGATTGCTGGGCAGAGCCACAACGTGATTCGAAGGTGTGTGTGATAATGCAGCACTGATAATTTCGATTTCTTCTGGACTGTAGTTGTAATGAACAGAGTTGATGTGATTAAAGGCAGACAAAAAAAATTTCATCCACAGTACTTAATATTGATGATACTGTCCCAGGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGGTAAGAGCCAAGAACATAAAAAAAAAATCAATATTTTGAAAAATAAACTTTGCAAATAGATTACAATAGGTGGTTTAACCAATGCAGTAGAAATAGAATATGGAGCAAATAATCTGTGGCAAAATATCAATCTGTTTGTTGCTCCAATCTCCATTTTTTGTTTTTTTTTAACTGATTCTTGCGTGCAAATTTCTGAAGATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGGGTGAGAATGAGCCACTGAATCACACTGAAATGTTCAGAAACATGTCTATTTTTTGGGGTTTTATCTAGGTGTTCAGTGTCTTCTTTTTTCAAGAACCGGTTTAGTGTTAAAGATTTCCTTCTTGATCCATTGGTTCTGTTACACCATTATCGCAGGGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGGTGATCACTCTTGGTGCTACTACCTGTCTGAACTTTCTGAAGCCGTCGATACTGAATGTCTGAAAAATGACTCGTGAATTTCTCTGACAAGTAGTCCAATGGTAGGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTCTCGCTGTGCGAATGGTAGGTTAGGACAACTCGATGTGTATTAGTTTCTCTGAACCTCTGAATCTGTGATCAGTTTCGTGTTCATCAATTTTTTTTGGCGAACATGCAAAAAGATTACACATCAGTATATTAGAAAAATCTGTGATCAGTTTCGTGTTCATCATTCGAGCTGTCGTGTTTGTCGGATTGATCAGGGGCGACATGCACCCGGCGAAGTGGGGCGCGGCGTACGGCAACAGCTGGAGAACCACCAACGACATCGCGGACACCTGGGAGAGGTGAACCGCCGTCTTCAACTATTTAAATGACATGCAAGAAACGAGAGGATCAGTGTTCAGAGTTCAGAGTTTTCATATGTGATTGTGTTCGTTCTGTTTCAGCATGGTGTCGAGGGCGGATGAGAACGAGGTGTGGGCGGACTACGCGCGACCTGGCGGCTGGAACGGTCAGTGAATCACTGACGAATCATATTACTGTATCATCAGTTCAATCCATGTCTGAATTTCAAATGCTACAGTTTCGTCTAAACTTAGGCATATAATTTGTGGTTTGTCAGACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGGTACTACCAAATGTGACGGATGTCGGATAATGATGGTATTCGTTTCTACTAAAGATGACGATGAAAATAGCGTAAAGAAAAAAAGAAAGTTATCATCGGTTAGCGTATGATTAATTGAGTTTTAATTATTACAAACTCTAAAAATAGATTTATGTAATACTTCAAAACAACTTTTATATAGAAAGGTTTTTAGACCAAATAGTTTAACAGTTTTAAAAACATGTTTACAAAAACTGAGATAAAATCTATATCGTGACCAGAAAAGAACGGTGATATACTACTCTGCTTTGCATTATTCTGCTCTTGCTGGGTTTGACAGATCGAAATTTTCTCTGAATTGGTCAGGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACGACATCCTGGCCAACAAGGAGGTCATCGCCGTCAACCAAGGTACTCTACTCTTCCTGCTGCCGCGAGCTTCAGGAATTCAGAGAGTTTTCATGGCGCTTGTCGGATTGATCTTTTTGGGAATTCAGATGCTCTGGGCATCCAGGGGAAGAAGGTGAGGATGGAGGGCAGCAGCGAGGTGTGGGCGGCGCCGCTGTCGGGTTACAGGACGGCGGTGCTGCTGCTGAACCGGCACGCGGCGGAGGCGGCGGCGATCACCGCGCACTGGGACGACGTCGGCCTCCCCGCCGGCACCGCCGTCGAGGCCAGGGACCTGTGGCGGCACGCGACGGTGGCCGGCGCCGGCGGCGAGTTGACGGAGAAGATCACCCTCGACGTGGCGCCGCACTCGTGCAGGATGCTCCTGCTCAAGCCCCTCATCTCGTCCCGGGCCAACTGAGACGAGCGGGCGAGCGAGCGAGCTCGCCGCCGGCGAGCAGGGCTCTCCGGGCGTCCTCGCCGTGACATTTTTTTTTAGATAATGGAATAAATATCCCTGTCTTTTTCTTCGGACAATAGAGTATAAAGATGGATATTTATCTTTAAACGCCAAGTTTCCTAGCCATTTATCTTCCCAGAACCTTATTTGATTCCCATCATTCACAATCCAAGAACCCATATGTAAGACAGTATTTTGACATTCATTAGACCTGGCCAAAATTGAGAATC
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| CDS seq | ATGGCGGCGGCGGCGGCGGTGCTGCTTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCCGGCGGCGAGTGCGGGAGGGTGGTGCACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCCAATGGCCTCGCCACGGCTCCTCCCATGGGTAATAGTAATGCTGATGCACTTGTGTCAACCGGGCTTGCAGCTGCTGGCTACAAATACGTCAACATCGATGATTGCTGGGCAGAGCCACAACGTGATTCGAAGGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGGGGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTCTCGCTGTGCGAATGGCATATAATTTGTGGTTTGTCAGACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACGACATCCTGGCCAACAAGGAGGTCATCGCCGTCAACCAAGATGCTCTGGGCATCCAGGGGAAGAAGGTGAGGATGGAGGGCAGCAGCGAGGTGTGGGCGGCGCCGCTGTCGGGTTACAGGACGGCGGTGCTGCTGCTGAACCGGCACGCGGCGGAGGCGGCGGCGATCACCGCGCACTGGGACGACGTCGGCCTCCCCGCCGGCACCGCCGTCGAGGCCAGGGACCTGTGGCGGCACGCGACGGTGGCCGGCGCCGGCGGCGAGTTGACGGAGAAGATCACCCTCGACGTGGCGCCGCACTCGTGCAGGATGCTCCTGCTCAAGCCCCTCATCTCGTCCCGGGCCAACTGA
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| Protein seq | MAAAAAVLLAVACAAAAMIAGGECGRVVHVGEEHRRSMLANGLATAPPMGNSNADALVSTGLAAAGYKYVNIDDCWAEPQRDSKGNLVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGVDYLKYDNCNNGDLKPLERYPEMSKALMMAGRPIYFSLCEWHIICGLSDPDMLEVGNGGMTNDEYIAPLIIGCDVRHMSQETYDILANKEVIAVNQDALGIQGKKVRMEGSSEVWAAPLSGYRTAVLLLNRHAAEAAAITAHWDDVGLPAGTAVEARDLWRHATVAGAGGELTEKITLDVAPHSCRMLLLKPLISSRAN |
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| Function | Alpha-galactosidase 1 [UniProtKB/Swiss-Prot:Q9FT97] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056220 | OsLiXu_Ung0056220.01 | ChrUN-Ctg424 | 18693 | 22215 | + | NAM | ||
| CDS seq | ATGGCGGCGGCGGCGGCGGTGCTGCTTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCCGGCGGCGAGTGCGGGAGGGTGGTGCACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCCAATGGCCTCGCCACGGCTCCTCCCATGGGTAATAGTAATGCTGATGCACTTGTGTCAACCGGGCTTGCAGCTGCTGGCTACAAATACGTCAACATCGATGATTGCTGGGCAGAGCCACAACGTGATTCGAAGGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGGGGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTCTCGCTGTGCGAATGGCATATAATTTGTGGTTTGTCAGACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGCTCCTCTGATCATCGGGTGCGACGTGAGGCACATGTCGCAGGAGACGTACGACATCCTGGCCAACAAGGAGGTCATCGCCGTCAACCAAGATGCTCTGGGCATCCAGGGGAAGAAGGTGAGGATGGAGGGCAGCAGCGAGGTGTGGGCGGCGCCGCTGTCGGGTTACAGGACGGCGGTGCTGCTGCTGAACCGGCACGCGGCGGAGGCGGCGGCGATCACCGCGCACTGGGACGACGTCGGCCTCCCCGCCGGCACCGCCGTCGAGGCCAGGGACCTGTGGCGGCACGCGACGGTGGCCGGCGCCGGCGGCGAGTTGACGGAGAAGATCACCCTCGACGTGGCGCCGCACTCGTGCAGGATGCTCCTGCTCAAGCCCCTCATCTCGTCCCGGGCCAACTGA
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| Protein seq | MAAAAAVLLAVACAAAAMIAGGECGRVVHVGEEHRRSMLANGLATAPPMGNSNADALVSTGLAAAGYKYVNIDDCWAEPQRDSKGNLVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGVDYLKYDNCNNGDLKPLERYPEMSKALMMAGRPIYFSLCEWHIICGLSDPDMLEVGNGGMTNDEYIAPLIIGCDVRHMSQETYDILANKEVIAVNQDALGIQGKKVRMEGSSEVWAAPLSGYRTAVLLLNRHAAEAAAITAHWDDVGLPAGTAVEARDLWRHATVAGAGGELTEKITLDVAPHSCRMLLLKPLISSRAN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056220 | OsLiXu_Ung0056220.02 | ChrUN-Ctg424 | 18636 | 22484 | + | IsoSeq | ||
| CDS seq | CTGATCAGCAGCAGCCAGCCGCCGGCGAGCTGTGCCGTTCTTGATCACCGAGGCGATGGCGGCGGCGGCGGCGGTGCTGCTTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCCGGCGGCGAGTGCGGGAGGGTGGTGCACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCCAATGGCCTCGCCACGGCTCCTCCCATGGGCTGGAACAGCTGGAATCACTTCGCCTGCGACGGCAACGGAGAAGACGTCATCAGGGAGACTGCTGATGCACTTGTGTCAACCGGGCTTGCAGCTGCTGGCTACAAATACGTCAACATCG
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| Protein seq | LISSSQPPASCAVLDHRGDGGGGGGAACGGVRRGGDDRRRRVREGGARGGGAPEEHARQWPRHGSSHGLEQLESLRLRRQRRRRHQGDC.CTCVNRACSCWLQIRQH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | ChrUN-Ctg424 | 21352 | 21728 | + | OsLiXu_Ung0056220.02 | OsLiXu_Ung0056220.01,OsLiXu_Ung0056220.02 | All |
| MX | ChrUN-Ctg424 | 18841 | 19438 | + | OsLiXu_Ung0056220.01 | OsLiXu_Ung0056220.01,OsLiXu_Ung0056220.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.222645 | 0.0 | 2.926866 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0492900 | SBH | 2.671640 | 2.073276 | 7.348446 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35070 | SBH | 1.643317 | 1.276731 | 1.734883 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0492900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015680 | SBH | 2.361222 | 0.000000 | 12.337108 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015910 | SBH | 0.766801 | 0.0 | 2.414794 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015320 | SBH | 2.281116 | 0.0 | 6.598806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015650 | SBH | 0.281403 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015600 | SBH | 29.123209 | 19.962805 | 15.788404 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309600 | SBH | 11.689049 | 6.775812 | 214.510544 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015550 | SBH | 0.536100 | 0.000000 | 1.294559 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0332400 | SBH | 35.8500615 | 15.9787185 | 0.496063 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015310 | SBH | 0.247095 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015210 | SBH | 1.725940 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015620 | SBH | 10.766368 | 12.890704 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015320 | RBH | 1.772805 | 0.0 | 0.821413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015830 | SBH | 0.442330 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015480 | SBH | 0.676150 | 0.000000 | 2.995847 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015550 | SBH | 0.000000 | 0.0 | 7.184288 |
