Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0015550 | OGI:10058350 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20506630-20510526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgatcagcagcagccagccgCcggcgagctgtgccgttcttgatcaccgaggcgatggcggcggcggcggcggtgctgcttgcggtggcgTgcgccgcggcggcgatgatcgccggcggcgagtgcgggagggtggtgcacgtgggggaggagcaccggaggagcatgctcgccaatggcctcgccacggctcctCccatggggtaaggaataataatcactcacatcgtcactaagcatgcagtaatttagcgtatctaattaatccaatgttaattctaatggttaagcgtagttagctagtaatagtaatggttaatctttgctgctatcctgtcatgtgagcaatagcgccttTCtgcttgtgagtctgcatcttggttaATttAagcTtctgaatttCatgcagctggaacagctggaatcacttcgcctgcgacggcaacggagaagacgtcatcagggagactggtaatttcagttatttTacgtaggatgTtttgattttgtcctaaatcaaatttctttttaagtttggtaaaacatatagagaaaatgtaataatatttctataacaaaaaattaattttgttaaatccttttttgcaatatatttgtTTGgagtaataaacttcTtttttttttctgtccggcagtgcCGgttacagctgtacatttgtactagtagTatcctactaccagcgtgagctgattgactgaaagtctgaaacagaataaTtgatgaaTtagcctttgtTGgatcttgattaattatttttccctttttttttCtgagcagctgatgcacttgtgtcaaccgggcttgcagctgctggctacaaatacgtCaacatcggtacgtgcgtcatgcatacgtcattgcttcttggaCtaacccttttttTCccTtttcttattattctaggaTattacTtgtcgTCaatggCtggaacTtgattgagtataataaaatCatgtgttctttttttaaaaaaCttttctgatgattaTttttattgTtattataggataatattgtcaatggcttgaattggagtataataaaatcatattgttaatagAaaaatgatatgattcTTttgaTattctatgatattgtcgtcaatggcttgacctgactgAgtataataaaatcgtgTttttttatatatatataaaaacttttcagatgaTtgctgggcagagccacaacgtgattcgaaggtgtgtgtgAtaaagcagcactgataatttcgatttcttcTggactgtagttgtaatgaacagagttgatgtgattaaaggcagacaaaaaaaatttcatccacagtacttaataTtgatgatactgtcccagggtaatcttgtggccaacaaaaagacattcccccacgggatcaaggcgctcgccgattatgTtcacagcaaggggctcaagctaggcatttactccgatgCAgggtaagagccaagaacataaaaaaaaaatcaaTattttgaaaaataaactttgcaaatagattacaataggtggtttaaccaatgcagtagaaatagaacatggagcaaatAaTCtgtggcaaaatatcaatctgtttgttgctCcaatctccaTtttttgtttttttaaCtgattcttgcgtgcaaaTttctgaagattcaagacgtgtgcgaaggttcagccggggtctctcggccacgaggagcaggacgccaagacattcgcatcgtgggtgagaatgagccaCtgaatcacactgaaatgttcagaaacatgtctattttttGgggttttatctaggtgttcagtgtcttcttttttcaagaaccggtttagtgttaaagatttccttcTtgatccattggttctgttacaccattatcgcagggagtggactacctcaagtatgataactgcaaCaatggcgacctgaagccaCtggagaggtgatcactcttggtgctactacctgtctgaactttctgaAgccgtcgatactgaatgtctgAaaaatgactcgtgaatttctctgacaagtagtccaatggtaggtaccCGgagatgagcaaggctCtgatgatggCcggccggccgatctacttctcgctgtgcgaatggtaggttaggacaactcgatgtgtattagTttctctgaacctctgaatctgtgatcAGgttcgtgttcatcattttttttggcgaacatgcaaaaaGATtacacatcagtatattagaaaaatctgtgatcagtttcgtgttcatcattcgagctgtcGTgtttgtcggattgatcaggggcgacatgcacccggcgaagtggggcgcggcgtacggCaacagctggagaaccaccaacgacatcgcggacacctgggagaggtgaaccgCcgtcttcAactatttaaatgAcatgcaagaaacgagaggatcagtgttcagagttcagagttttcatatgtgattgtgttcgttctgtttcagcatgtgtcgagggcggatgagaacgaggtgtgggtggcgaacatgcaaaaagaTtacacatcagtatattagaaaaatctgtgatcagtttcgtgttcatcattcgagctgtcgtgtttgtcggattgatcaggggcgacatgcaCccggcgaagtggggcgcggcgtacggcAacagctggagaaccaccaacgacatcgcggacacctgggagaggtgaaccgccgtcttCaactatttaaatgacatgcaagaaacgagaggatcagtgttcagagttcagagttttcatatgtgattgtgttcgttctgtttcagcatggtgtcgagggcggatgagaacgaggtgtgggcggactacgcgcgacctggcggctggaacggtcagtgaatcactgacgaatcatattactgtatcatcagttcaatccatgtctgaatttcaaatgctacagtttcgtctaaacttaggcatataatttGTgGtttgtcagacccggacatgctggaggttggcaatggcgggatgaccaacgacgagtacatcgtccatttcagcctctgggCcatctccaaggtactaccAaatgtgacggatgtcggataaTgatggtattcgtttctactaaagatgacgatgaaaatagcgtaaagaaaaaaagaaagtTatcatcggttagcgtatgattaaTtgagttttaattaTtacaaactctaaaaatagatttatgtaatacttcaaaacgacttttatatagaaaggTTTttagaccaaatagtttaacagtttTaaaaacatgtttacaaaaactgagataaaatctatatcgtgaccagaaaagaacggtgatatactactctgctttgcattattctgctcttgctgggtttgacagatcgaaattttctctgaaTtggtcaggctcctctgaaccggcacgcggcggaggcggcggcgatcaccgcgcactgggacgacgtcggcCTccCcgccggcaccgccgtcgaggccagggacctgtggcggcacgcgacggtggccggcgccggcggcgagttgacggagaagatcaccctcgacgtggcgccgcactCttgcaggatgctcctgctcAagcccctcatCtcgtcccgggccaactgagacgagcgggcgagcgagcgagctcgccgccggcgagcagggctctCcgggcgtCctcgccgtgacatttttttttagataatggaataaatatCcctgtctttTCcttcggacaatagagtatAaagatggatatttatcTttaaacgccaagtttcctagccatttatcttCccagaaccttatttgattcccatcattcacaatccaagaacccAtatgtaagacagtattttgacattcattagacctggccaaaattgagaatc
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| CDS seq | atgcacttgtgtcaaccgggcttgcagctgctggctacaaatacgtCaacatcgggtaatcttgtggccaacaaaaagacattcccccacgggatcaaggcgctcgccgattatgTtcacagcaaggggctcaagctaggcatttactccgatgCAggattcaagacgtgtgcgaaggttcagccggggtctctcggccacgaggagcaggacgccaagacattcgcatcgtggggagtggactacctcaagtatgataactgcaaCaatggcgacctgaagccaCtggagaggtaccCGgagatgagcaaggctCtgatgatggCcggccggccgatctacttctcgctgtgcgaatggtgtgggcggactacgcgcgacctggcggctggaacggctcctctgaaccggcacgcggcggaggcggcggcgatcaccgcgcactgggacgacgtcggcCTccCcgccggcaccgccgtcgaggccagggacctgtggcggcacgcgacggtggccggcgccggcggcgagttgacggagaagatcaccctcgacgtggcgccgcactCttgcaggatgctcctgctcAagcccctcatCtcgtcccgggccaactga
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| Protein seq | MHLCQPGLQLLATNTSTSGNLVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGVDYLKYDNCNNGDLKPLERYPEMSKALMMAGRPIYFSLCEWCGRTTRDLAAGTAPLNRHAAEAAAITAHWDDVGLPAGTAVEARDLWRHATVAGAGGELTEKITLDVAPHSCRMLLLKPLISSRAN |
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| Function | Alpha-galactosidase [UniProtKB/Swiss-Prot:Q42656] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0015550 | OsNaBo_10g0015550.01 | Chr10 | 20506669 | 20510257 | + | NAM | ||
| CDS seq | atgcacttgtgtcaaccgggcttgcagctgctggctacaaatacgtCaacatcgggtaatcttgtggccaacaaaaagacattcccccacgggatcaaggcgctcgccgattatgTtcacagcaaggggctcaagctaggcatttactccgatgCAggattcaagacgtgtgcgaaggttcagccggggtctctcggccacgaggagcaggacgccaagacattcgcatcgtggggagtggactacctcaagtatgataactgcaaCaatggcgacctgaagccaCtggagaggtaccCGgagatgagcaaggctCtgatgatggCcggccggccgatctacttctcgctgtgcgaatggtgtgggcggactacgcgcgacctggcggctggaacggctcctctgaaccggcacgcggcggaggcggcggcgatcaccgcgcactgggacgacgtcggcCTccCcgccggcaccgccgtcgaggccagggacctgtggcggcacgcgacggtggccggcgccggcggcgagttgacggagaagatcaccctcgacgtggcgccgcactCttgcaggatgctcctgctcAagcccctcatCtcgtcccgggccaactga
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| Protein seq | MHLCQPGLQLLATNTSTSGNLVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGVDYLKYDNCNNGDLKPLERYPEMSKALMMAGRPIYFSLCEWCGRTTRDLAAGTAPLNRHAAEAAAITAHWDDVGLPAGTAVEARDLWRHATVAGAGGELTEKITLDVAPHSCRMLLLKPLISSRAN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0015550 | OsNaBo_10g0015550.02 | Chr10 | 20506630 | 20510526 | + | IsoSeq | ||
| CDS seq | ctgatcagcagcagccagccgCcggcgagctgtgccgttcttgatcaccgaggcgatggcggcggcggcggcggtgctgcttgcggtggcgTgcgccgcggcggcgatgatcgccggcggcgagtgcgggagggtggtgcacgtgggggaggagcaccggaggagcatgctcgccaatggcctcgccacggctcctCccatgggctggaacagctggaatcacttcgcctgcgacggcaacggagaagacgtcatcagggagactgctgatgcacttgtgtcaaccgggcttgcagctgctggctacaaatacgtCaacatcg
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| Protein seq | LISSSQPPASCAVLDHRGDGGGGGGAACGGVRRGGDDRRRRVREGGARGGGAPEEHARQWPRHGSSHGLEQLESLRLRRQRRRRHQGDC.CTCVNRACSCWLQIRQH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr10 | 20507486 | 20507988 | + | OsNaBo_10g0015550.02 | OsNaBo_10g0015550.01,OsNaBo_10g0015550.02 | All |
| SE | Chr10 | 20509496 | 20510036 | + | OsNaBo_10g0015550.02 | OsNaBo_10g0015550.01,OsNaBo_10g0015550.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 7.184288 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0492900 | SBH | 2.671640 | 2.073276 | 7.348446 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35070 | RBH | 1.643317 | 1.276731 | 1.734883 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0492900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015680 | RBH | 2.361222 | 0.000000 | 12.337108 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015910 | RBH | 0.766801 | 0.0 | 2.414794 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015320 | RBH | 2.281116 | 0.0 | 6.598806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015650 | RBH | 0.281403 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015600 | RBH | 29.123209 | 19.962805 | 15.788404 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309600 | RBH | 11.689049 | 6.775812 | 214.510544 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015550 | RBH | 0.536100 | 0.000000 | 1.294559 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0332400 | RBH | 35.8500615 | 15.9787185 | 0.496063 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015310 | RBH | 0.247095 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015210 | RBH | 1.725940 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015620 | RBH | 10.766368 | 12.890704 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015320 | RBH | 1.772805 | 0.0 | 0.821413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015830 | RBH | 0.442330 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015480 | RBH | 0.676150 | 0.000000 | 2.995847 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
