Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0053100 | OGI:99052470 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg411:60398-61641 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAAAGAAGAGCCTCTTCCAGATCTAGAAGAGAAGCTAGGGTTAACGAACGAACGAACGCAAGCAACATCCAGACAAAAGTAGTTCCGACGGGAGAGACAGAGAGAGAGACGAATCAGAAAGAGGCTCACCACGGCTGAGATCGTGGCCGGCGGCTGAGGTGGAGAGGAGGAAGGAAAGCGGAGAAGAGGGGGCAGTGTTTGCGGCGAGGAAGGCCGGGGACGAGGAAGGGAGGGAGAGGGATCTGTGGCGGGTTGAGGGCAAGGTGGAGAAGGGGCGGACGGCGAGGCGGCGCAGTGAGGAGGTGGGTGGGGATCGCCGGTGGCGACGACGCACGCTCCAACGGAGAAGGGTAGTTGGCGATGAGCCGCTACTCCTGCTCCCGGGGCGGCATCGAGGCGGTGGAGACGAAAGCCCGAAGCGGCGACAAGATTGGATTTTGGACGAGCGGTTCCTTTTGGGAAACTCTTCCTTCCTTTTTCTCTCTCTATCGAGTGGAGGAGAATTTTCAGAATATACCACCCAATAGTCAGCACACCCAATTCACACTACTTTTAGAAAAGTATACAGTACTTAAGCGTGAATTTTCTTCATTCCGTGTCACTCCATCCATCTAAAGCTGCGCGTCACCAGTTCATCCTCTCACGCCGTTTGCCCACACACATCAGGCTGCTGGCGAGCTCGTCCTCCCCCACGCCAGCGAGCTCGTCCTCCCCACACCAGCGAGCTCCTCCTCCCCCATGCGTCTGGCCGCCGGCAAGCTCGTCCTTCCCTATGCCGACGAGTTCATCCTACCCTCCCCACACCGACTTCCCGCCCTTCTGGTAGTTGCTGTTCACCATGTAGCCCTCCCATGGGTTGGTACGCCAGGACACGCGCGAGCCTTTCCAGATGACCACCTGAAGCGGCTGGTCCGGGTCGCTGCCGAAGGAGAATTTCCCCAGCGACAGGTCGGTGGTGCCCTTCCATGAGACAAGCCGCACGCCACCGCGCGTCCGGTAGATGACGCCGATCTTCATGCCGGGCAGGAATGTGTTGCTGGGGTGCTCGAACGTCTCCCACAAGGCGGTGCCATCCGGCAGCCGGAGCACGAGGTTGCTAGAGTTTGCGAGCACCGCCATAGCACCGCCGCCTCCTCCCGACGCCGACGAGTTCACACCGGCGGTGACGTTAGTACTCCAAAGGGCGTGGCCGGTGGCGCCATCGGACAAGACCAGGTTGCCGTCGCTGGCAATGGCGAGCAT
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| CDS seq | ATGCTCGCCATTGCCAGCGACGGCAACCTGGTCTTGTCCGATGGCGCCACCGGCCACGCCCTTTGGAGTACTAACGTCACCGCCGGTGTGAACTCGTCGGCGTCGGGAGGAGGCGGCGGTGCTATGGCGGTGCTCGCAAACTCTAGCAACCTCGTGCTCCGGCTGCCGGATGGCACCGCCTTGTGGGAGACGTTCGAGCACCCCAGCAACACATTCCTGCCCGGCATGAAGATCGGCGTCATCTACCGGACGCGCGGTGGCGTGCGGCTTGTCTCATGGAAGGGCACCACCGACCTGTCGCTGGGGAAATTCTCCTTCGGCAGCGACCCGGACCAGCCGCTTCAGATCTGGAAGAGGCTCTTCTTTTAA |
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| Protein seq | MLAIASDGNLVLSDGATGHALWSTNVTAGVNSSASGGGGGAMAVLANSSNLVLRLPDGTALWETFEHPSNTFLPGMKIGVIYRTRGGVRLVSWKGTTDLSLGKFSFGSDPDQPLQIWKRLFF |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 [UniProtKB/Swiss-Prot:Q9SXB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0053100 | OsLiXu_Ung0053100.01 | ChrUN-Ctg411 | 60398 | 61641 | - | NAM | ||
| CDS seq | ATGCTCGCCATTGCCAGCGACGGCAACCTGGTCTTGTCCGATGGCGCCACCGGCCACGCCCTTTGGAGTACTAACGTCACCGCCGGTGTGAACTCGTCGGCGTCGGGAGGAGGCGGCGGTGCTATGGCGGTGCTCGCAAACTCTAGCAACCTCGTGCTCCGGCTGCCGGATGGCACCGCCTTGTGGGAGACGTTCGAGCACCCCAGCAACACATTCCTGCCCGGCATGAAGATCGGCGTCATCTACCGGACGCGCGGTGGCGTGCGGCTTGTCTCATGGAAGGGCACCACCGACCTGTCGCTGGGGAAATTCTCCTTCGGCAGCGACCCGGACCAGCCGCTTCAGATCTGGAAGAGGCTCTTCTTTTAA
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| Protein seq | MLAIASDGNLVLSDGATGHALWSTNVTAGVNSSASGGGGGAMAVLANSSNLVLRLPDGTALWETFEHPSNTFLPGMKIGVIYRTRGGVRLVSWKGTTDLSLGKFSFGSDPDQPLQIWKRLFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.140841 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g02410 | SBH | 0.033325 | 0.000000 | 0.269021 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000610 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000590 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0000580 | SBH | 1.074384 | 8.693948 | 13.101647 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000550 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0000710 | SBH | 0.566453 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0011500 | SBH | 3.1700985 | 8.2229055 | 6.168711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000700 | SBH | 0.025521 | 0.000000 | 0.146251 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000650 | SBH | 0.006900 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000640 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000760 | SBH | 0.000000 | 1.990242 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0000650 | RBH | 0.0 | 0.0 | 0.140841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000670 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000720 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000680 | SBH | 0.0 | 0.0 | 0.0 |
