Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0000580 | OGI:09002640 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:1156727-1159904 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaatttgatgagttgcatctgcaatattttaatccttatgctcatgcaaattaacttttttcatatcagtgcagtacaatcttgagttttcaactgattattgatacgtataatcttgagttttcaactgatcaatacaagacccataattgtaagtatcatctttagcactagaaaccgaaaaacaagcccaaaattttaagacttccagttccatacactctacagctaacttcagtcaggcctacaacagataccttctcctcgaagtaacttatcagtacatccacgagtctctgaaactaagcaagaaatgcatcagctctagtatacgacagcacagttcaatgcttggtaattaagcaggcttcaccatataaattaagacatacttatggtaaccatctcgcaggacgtcagagaatcacaaggaagaaaccagtgctgttgtcaataacccctccagataaattatagcaggcaggcaactatctttacacagaggatatgcctttgatcacgcctaatgcgtgcctcaaaccagtcattcaattattatttcatctcacacattgacatgatttatcactgccctaaaggcctagagagagagagaaagagagagagagagagagagagagaaaggttattaggcatgttgctgcaccgggaactagaccggacttattagtgagcgagcagctcatggattgaattgtcaaaactcatcggccaggctgactccataatgctgagctaggctcttcatgtttccgttctgtacgacattctccagcatgtcgtacttcttgtaatttccatcgagtaattcctgctgctgctttgccagctccttctcctcttccaattgattctggcagaaacacaaacacaacacatcaatgccatgttacaagatcaaagcaacagcaacttggtcctggtaagcaatagcatcaagatcccaaaatactgtcctgctacaaacacaatacttggactaacaacgctgggcaagcgcataatagttctccagtcatgcttacggttatagttactcgtgttaaatgcagaatgtgtactcaattatccatttctaaattacaatttacaacggcccagcgaaaaaattacaatttgcaagaagcatattatatgcatattacagtaatcaatttaagcatgttatatgcagacattcctccaggtcaacaaacttgatcataattcagaataaatatatccatacatgcaaaaacatatttaggttggcagaaattacgctgtttaaggcgtactgagcataaaacaaacataagatggcgattcttaaaagaggttagaagcagtgaaataaatagttcatttaaaaaggagtcactaatttacctttatgagtgccatattttctgcttcttgcctttttgctaggatcctcaatttcttcattccttcatactctgttccatcttcttgttttacccaccggaactctttcttgatgtcagggcaaggagggcgttcccgaaacatgtcgggctttgcacatgtagctcttacaggccttggcatcccgccaattatgaaagggaaatcattcatcaagtctagtgcagccttagcttgtatttcgtcatccaattccaccaatgcagcagaaggaatgtcatacgggattgtgtaattaacaatgaactccacatcgacaacatttgcacattgggcaagggctgctttaagtactgagctcgtgacttgaggggaaagatgatcaatatagatggtcctcttgaccttcttctcgaaatcagcatacgccttcttagcatcttcatgggatgtcaccatgggagcaggggcggatccaacttgggacatgggggttcagttgaacccccaaactgttacttgtattaaggttaaggctctgaaattaaaagaagagcctcttccagatctagaagagaagctagggttaacgaacgaacgaacgcaagcaacatccagacaaaagtagttccgacgggagagacagagagagagatgaatcagaaagaggctcaccacggctgagatcgtggccggcggctgaggtggagaggaggaaggaaagcggagaagagggggcagtgtttgcggcgaggaaggccggggacgaggaagggagggagagggatctgtggcgggttgagggcaaggtggagaaggggcggacggcgaggcggcgcagtgaggaggtgggtggggatcgccggtgacgacgacgcacgctccgacggagaagggtagttggcgatgagccgctactcctgctcccggggcggcatcaaggcggtggagacgaaagcccgaagcggcgacaagattggattttggacgagcggttccttttgggaaactcttccttcctttttctctctctatcgagtggaggagaattttcagaatataccacccaatagttagcacacccaattcacactacttttagaaaaggatacactacttaagcgtgaattttcttcattccgtgtcactccatccatccaaagctgcacgtcatcagttcatcctctcgcgccgtttgcccacacacatcaggctgctggcgagctcgtcctcccccacgccagcgagcttgtcctccccacaccagcgagctcctcctcccccacgtgtctggccgccggcgagctcgtccttccctatgccgacgagctcatcctaccctccccacaccgacttcccgcccttctggtagttgctgtccaccatgtagccctcccatgggttggtgcgctaggacacgcgcgagcctttccagatgaccacctgaagcggctggtccgggtcgccgccgaaggagaatttccccggcgacaggtcggtggtgcccttccatgagacaagccgcacgccaccgcgcgttcggtagatgacgccgatcttcatgccgggcaggaatgtgttgcaggggtgctcgaacgtctcccacaagacggtgccatccggcagccggagcacgaggttgctagagtttgcgagcaccgccatagcaccgccgcctcctcccgacgccgacgagttcacaccggcggtgacgttagtactccaaagggcgtggccggtggcgccatcggacaagactaggttgccgtcgctggcaatggcgagcat
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| CDS seq | atgctcgccattgccagcgacggcaacctagtcttgtccgatggcgccaccggccacgccctttggagtactaacgtcaccgccggtgtgaactcgtcggcgtcgggaggaggcggcggtgctatggcggtgctcgcaaactctagcaacctcgtgctccggctgccggatggcaccgtcttgtgggagacgttcgagcacccctgcaacacattcctgcccggcatgaagatcggcgtcatctaccgaacgcgcggtggcgtgcggcttgtctcatggaagggcaccaccgacctgtcgccggggaaattctccttcggcggcgacccggaccagccgcttcaggtggtcatctggaaaggctcgcgcgtgagtagcggctcatcgccaactacccttctccgtcggagcgtgcgtcgtcgtcaccggcgatccccacccacctcctcactgcgccgcctcgccgtccgccccttctccaccttgccctcaacccgccacagatccctctccctcccttcctcgtccccggccttcctcgccgcaaacactgccccctcttctccgctttccttcctcctctccacctcagccgccggccacgatctcagccgtgatctggaagaggctcttcttttaatttcagagccttaa
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| Protein seq | MLAIASDGNLVLSDGATGHALWSTNVTAGVNSSASGGGGGAMAVLANSSNLVLRLPDGTVLWETFEHPCNTFLPGMKIGVIYRTRGGVRLVSWKGTTDLSPGKFSFGGDPDQPLQVVIWKGSRVSSGSSPTTLLRRSVRRRHRRSPPTSSLRRLAVRPFSTLPSTRHRSLSLPSSSPAFLAANTAPSSPLSFLLSTSAAGHDLSRDLEEALLLISEP |
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| Function | Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [UniProtKB/Swiss-Prot:Q9SY89] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000580 | OsCMeo_09g0000580.02 | Chr09 | 1158788 | 1159904 | - | NAM | ||
| CDS seq | atgctcgccattgccagcgacggcaacctagtcttgtccgatggcgccaccggccacgccctttggagtactaacgtcaccgccggtgtgaactcgtcggcgtcgggaggaggcggcggtgctatggcggtgctcgcaaactctagcaacctcgtgctccggctgccggatggcaccgtcttgtgggagacgttcgagcacccctgcaacacattcctgcccggcatgaagatcggcgtcatctaccgaacgcgcggtggcgtgcggcttgtctcatggaagggcaccaccgacctgtcgccggggaaattctccttcggcggcgacccggaccagccgcttcaggtggtcatctggaaaggctcgcgccggctcatcgccaactacccttctccgtcggagcgtgcgtcgtcgtcaccggcgatccccacccacctcctcactgcgccgcctcgccgtccgccccttctccaccttgccctcaacccgccacagatccctctccctcccttcctcgtccccggccttcctcgccgcaaacactgccccctcttctccgctttccttcctcctctccacctcagccgccggccacgatctcagccgtggtga
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| Protein seq | MLAIASDGNLVLSDGATGHALWSTNVTAGVNSSASGGGGGAMAVLANSSNLVLRLPDGTVLWETFEHPCNTFLPGMKIGVIYRTRGGVRLVSWKGTTDLSPGKFSFGGDPDQPLQVVIWKGSRRLIANYPSPSERASSSPAIPTHLLTAPPRRPPLLHLALNPPQIPLPPFLVPGLPRRKHCPLFSAFLPPLHLSRRPRSQPW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000580 | OsCMeo_09g0000580.04 | Chr09 | 1157014 | 1159092 | - | NAM | ||
| CDS seq | atgtcccaagttggatccgcccctgctcccatggtgacatcccatgaagatgctaagaaggcgtatgctgatttcgagaagaaggtcaagaggaccatctatattgatcatctttcccctcaagtcacgagctcagtacttaaagcagcccttgcccaatgtgcaaatgttgtcgatgtggagttcattgttaattacacaatcccgtatgacattccttctgctgcattggtggaattggatgacgaaatacaagctaaggctgcactagacttgatgaatgatttccctttcataattggcgggatgccaaggcctgtaagagctacatgtgcaaagcccgacatgtttcgggaacgccctccttgccctgacatcaagaaagagttccggtgggtaaaacaagaagatggaacagagtatgaaggaatgaagaaattgaggatcctagcaaaaaggcaagaagcagaaaatatggcactcataaagaatcaattggaagaggagaaggagctggcaaagcagcagcaggaattactcgatggaaattacaagaagtacgacatgctggagaatgtcgtacagaacggaaacatgaagagcctagctcagcattatggagtcagcctggccgatgagttttga
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| Protein seq | MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000580 | OsCMeo_09g0000580.05 | Chr09 | 1156727 | 1159088 | - | NAM | ||
| CDS seq | atgtcccaagttggatccgcccctgctcccatggtgacatcccatgaagatgctaagaaggcgtatgctgatttcgagaagaaggtcaagaggaccatctatattgatcatctttcccctcaagtcacgagctcagtacttaaagcagcccttgcccaatgtgcaaatgttgtcgatgtggagttcattgttaattacacaatcccgtatgacattccttctgctgcattggtggaattggatgacgaaatacaagctaaggctgcactagacttgatgaatgatttccctttcataattggcgggatgccaaggcctgtaagagctacatgtgcaaagcccgacatgtttcgggaacgccctccttgccctgacatcaagaaagagttccggtgggtaaaacaagaagatggaacagagtatgaaggaatgaagaaattgaggatcctagcaaaaaggcaagaagcagaaaatatggcactcataaagaatcaattggaagaggagaaggagctggcaaagcagcagcaggaattactcgatggaaattacaagaagtacgacatgctggagaatgtcgtacagaacggaaacatgaagagcctagctcagcattatggagtcagcctggccgatgagttttga
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| Protein seq | MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000580 | OsCMeo_09g0000580.01 | Chr09 | 1156798 | 1159904 | - | NAM | ||
| CDS seq | atgctcgccattgccagcgacggcaacctagtcttgtccgatggcgccaccggccacgccctttggagtactaacgtcaccgccggtgtgaactcgtcggcgtcgggaggaggcggcggtgctatggcggtgctcgcaaactctagcaacctcgtgctccggctgccggatggcaccgtcttgtgggagacgttcgagcacccctgcaacacattcctgcccggcatgaagatcggcgtcatctaccgaacgcgcggtggcgtgcggcttgtctcatggaagggcaccaccgacctgtcgccggggaaattctccttcggcggcgacccggaccagccgcttcaggtggtcatctggaaaggctcgcgcgtgagtagcggctcatcgccaactacccttctccgtcggagcgtgcgtcgtcgtcaccggcgatccccacccacctcctcactgcgccgcctcgccgtccgccccttctccaccttgccctcaacccgccacagatccctctccctcccttcctcgtccccggccttcctcgccgcaaacactgccccctcttctccgctttccttcctcctctccacctcagccgccggccacgatctcagccgtgatctggaagaggctcttcttttaatttcagagccttaa
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| Protein seq | MLAIASDGNLVLSDGATGHALWSTNVTAGVNSSASGGGGGAMAVLANSSNLVLRLPDGTVLWETFEHPCNTFLPGMKIGVIYRTRGGVRLVSWKGTTDLSPGKFSFGGDPDQPLQVVIWKGSRVSSGSSPTTLLRRSVRRRHRRSPPTSSLRRLAVRPFSTLPSTRHRSLSLPSSSPAFLAANTAPSSPLSFLLSTSAAGHDLSRDLEEALLLISEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0000580 | OsCMeo_09g0000580.03 | Chr09 | 1156798 | 1159092 | - | NAM | ||
| CDS seq | atgtcccaagttggatccgcccctgctcccatggtgacatcccatgaagatgctaagaaggcgtatgctgatttcgagaagaaggtcaagaggaccatctatattgatcatctttcccctcaagtcacgagctcagtacttaaagcagcccttgcccaatgtgcaaatgttgtcgatgtggagttcattgttaattacacaatcccgtatgacattccttctgctgcattggtggaattggatgacgaaatacaagctaaggctgcactagacttgatgaatgatttccctttcataattggcgggatgccaaggcctgtaagagctacatgtgcaaagcccgacatgtttcgggaacgccctccttgccctgacatcaagaaagagttccggtgggtaaaacaagaagatggaacagagtatgaaggaatgaagaaattgaggatcctagcaaaaaggcaagaagcagaaaatatggcactcataaagaatcaattggaagaggagaaggagctggcaaagcagcagcaggaattactcgatggaaattacaagaagtacgacatgctggagaatgtcgtacagaacggaaacatgaagagcctagctcagcattatggagtcagcctggccgatgagttttga
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| Protein seq | MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.074384 | 8.693948 | 13.101647 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0550300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g02410 | RBH | 0.033325 | 0.000000 | 0.269021 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0550300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000610 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000590 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000550 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0000710 | SBH | 0.566453 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0011500 | SBH | 3.1700985 | 8.2229055 | 6.168711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000700 | SBH | 0.025521 | 0.000000 | 0.146251 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000650 | SBH | 0.006900 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000640 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000760 | SBH | 0.000000 | 1.990242 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0000650 | RBH | 0.0 | 0.0 | 0.140841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000670 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000720 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000680 | RBH | 0.0 | 0.0 | 0.0 |
