Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0051170 | OGI:99050960 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg390:73324-73988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACGTCCTCGAGCCCGAGGTCTGAATTTATTCATAATAGTACTCCTACTGACTTCGGCTTTAGTGATGAATAAATTTGATTTGTCGAAATCCCTATAATGAGTAGCATTTGCTGCTGTCGAATAAAACAACTTTAAGATGGGATAAGATGCTCGATAAGGCATGAGGTTCAATATCATAACAGTTTCTTCGTAGTAACGCCAACGAATCTCATCCAGAACTCTTTGTACTTTGAAAACGGACATGTGGATGCGTTTTTGTGCTTTGAAAACCCGTTCGAACTTAAGTAGACGATCGGTTGGTACTTTTCTTGCGAGTTTCCTTAGCCCACTCTTCTTCTTCTTTATCCTAGGGATATACTTTACCAGTTTGAAACTTGTCATAAATAAGGTTATTCCCCGCTTACCTATTTCTTTTTTTTATTTTGAATCTTTCTATTCTGAATTCAGTTAACGACGAGATTTAGTATCCTTTCTTGCACTTTCATAACTCGTGAAATGCTGAGTTGGTACGAATTCCCCCAATTTGCGACCTACCATAGGATTTATTATGTAAATAGGTATATGTTCCTTTCCATTATGAATCGCGATTGTATGGCCAACCATTGCGGGTAGAATGCTAGATGCCCGGGACCACGTTACTATTGTTTCTTTCTCCTCCTTCAT
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| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAATAAATCCTATGTATATCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGTTTTATTCGACAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAATCAAATTTATTCATCACTAAAGCCGAAACCTCGGGCTCGAGGACGTAG
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYIINPMYIPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLFYSTAANATHYRDFDKSNLFITKAETSGSRT |
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| Function | 50S ribosomal protein L22, chloroplastic [UniProtKB/Swiss-Prot:P0C446] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0051170 | OsLiXu_Ung0051170.01 | ChrUN-Ctg390 | 73324 | 73988 | - | NAM | ||
| CDS seq | ATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAATAAATCCTATGTATATCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGTTTTATTCGACAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAATCAAATTTATTCATCACTAAAGCCGAAACCTCGGGCTCGAGGACGTAG
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| Protein seq | MKEEKETIVTWSRASSILPAMVGHTIAIHNGKEHIPIYIINPMYIPRIKKKKSGLRKLARKVPTDRLLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLFYSTAANATHYRDFDKSNLFITKAETSGSRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19952 | SBH | 0.769474 | 0.587535 | 0.303894 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007520 | SBH | 0.700120 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007510 | SBH | 3.449591 | 3.352130 | 16.305773 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007730 | SBH | 0.000000 | 0.000000 | 1.431063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007570 | SBH | 13.785064 | 3.672359 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007700 | SBH | 111.490135 | 52.005047 | 227.197906 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205500 | SBH | 135.059227 | 53.312681 | 38.6140655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007670 | SBH | 1.383284 | 0.434528 | 2.450686 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185600 | SBH | 153.5352555 | 39.036564 | 39.08638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007620 | SBH | 43.842529 | 3.352342 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007420 | SBH | 45.526207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007350 | SBH | 276.074738 | 184.596802 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007350 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007420 | SBH | 31.952805 | 54.269058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007960 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007770 | SBH | 34.733047 | 57.594742 | 113.715134 |
