Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0031730 | OGI:99036680 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg234:433333-436416 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaatcagcagtcgttagagaaatccaaagatgaacacagaccattggagtattgcttgcggaagtacctcttgctgctggccattatggtggccacggtgacttatgctgccgggttcaacccgccggggggtgtctggcagaataccgaggccgggcacctcgccggtgagtccatcatccgagatacgtactatCcccggtaccttgttttcttctactgcaatgcggccgcatttgctttgtccattgtggtcatcatcctcatcttaatccttgccgtcgtacacgagaagaaagggttatggatctccatgatcccactgcgggtggccatggtgctggatctgcttggcctcgtgggggcctatgctgctgggaccagccggggtgtgctaaaagccaagaatgcctgcgtgttagtcgccatttttgtctatatggctgttcaagttgtgctgacttcattccatgggaacctagaagtgttcagctgcacaggtaatgcctctagttatgcacatttgacagagaccataaactgttcctaacagcaacaggataatcacaaccaggtgtcaaaaagaaggaagcaaaggggcaactggaatcagctgatggcaaaggggagataaacaaagaggaggaaaaagagcggcgccgcaagctccttctacttcttgctacatttgtgatgagcatcacatacctggctgggttgagcgcacctggtggctactgggacagcagcaaggagggccacattgcaggtgacccagtcatgcgggaacaccattctatccgcctgaaggcattcttcacctttaatgctattgcatttgtcatgtccctgctcatcattatgctgctcttagacaagcagctcgtcatcccactgctcaagggcaagaatcagaacaaaaccagcccagtacggacctttgtgctcaaagcatacatctttatcgctcttgtcggtcttgcgggggcctatgccaccggaagcagccgagaatgtgacactaccatctatgtgggcagtctggttcttgccgttcttgcatgcattattgtcctcaaggcgattatatcctgtcaggcatattcaaatgacaggtattgaatgctttttctgcttccaaatattattgccatctgtaattccatcttaaatttgcatgctcaatggctcatgaatcaccaggtcaaacaatgttgaagaacagacgagcacaggcaattgtagagcacagataaacacaagcaatggtggtgcagagtctctctcaagcaatggtggtgcagagtctgtctcaagcaatggtggtgcagagtctgtctcaagcaatgctagagcacagccaaccacaaccaatggtggtgaagagacgaagacaagcaatgctggagcacagaagaacacaagaaatgcagattttatggatcaggctcaatctcttgttgtactgctttcaacccttgtagcaaccgtcgcataccaagcaggactggtccctcctggtggtgtttggcaggacaactggaacggacatgaggctggcgattcaatactcctatccatgcaaccagaacgttacagggtattcttttactgcaactcaatagccttcgcagcgtccttggtcatcatcatcttggtccagtataagcctatactcaagctccgcgtactccagtttgccatgatattggatctgtttggcctcattggtgcatactcttctgggagctgccgagatgtaaccacatccatttatgtcattgccttggctggagctgtcctaatctatgtggttattcatgttctgtttgtcacgctcgaagatgaagacatacgaaaggaaggcagggagaaggaccagaaacttgaggacaagagacgcaagaggttgctcctttttgctgtcttgtgtgtgacacttacttaccaagctgggttgaccccaccaggcggaTtttggctgatggatgatgagtttgggcaccatgcaggtgaccctgtcctcttttacaactatccacgccgttataaggctttcttctactgcaattcaatgagcttcatgtcatcgattgccctaattatactccttgtgaatccgaacctgtacaggccagccatacgaagttatgctctctcagtttgcactgcggtaggcatgtttgcgcttttgtgtgcctatgctgctggaagcactcagcacctgaaaacatccatctatatctttggtttggtgctgttggtattcttcattatgatcgtactcctaatatattcctattggagacagaaaagaatcatgtcacataacaaagaagatacagaaaaaggaaagtcccctggcacacaaaatgaggatatcacaaaacaagacagtaaaacagtgaagcctactgggacaaaatctgatgtagaaatggaagaagatgacataacagcgaagtccactaagttaaaagaaaatgacagcacaggaaagtcctctgaaatagaagatgagggtgaagccaaacaaaatagattagaacattctattgagagagcaaaacaagaaacagccacagagtctcccaagaaagaggacaaatcaaaaaagaaacatgccacacgcaaatacttgatgctgctaggagtcttggctgcaagtgttacttaccaggccggtctcaacccacccggcggtgtgtggcagggaaatagtaatgatcatgcagcaggtaacccagttatgcatgacaaaaaaagataccgttatctcatcttcttttacagcaactctacttcatttgtggcatccattgttgttatcatcctgttgctaccagagaaactgctgggggaggcatggtcacttaatgtgatgaacataacgattgtgttggacttacttggcctcctactagcctacatggctggctcaagaatgaggttgcagtcttctggatatttcgtcgtgtttgttataggtgcactaggctttgctgcaattcacaagatttggtcatatttgcaaaggaaaagaaatgatcagcacagactgttagaccaacccagatag
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| CDS seq | atggcgaatcagcagtcgttagagaaatccaaagatgaacacagaccattggagtattgcttgcggaagtacctcttgctgctggccattatggtggccacggtgacttatgctgccgggttcaacccgccggggggtgtctggcagaataccgaggccgggcacctcgccggtgagtccatcatccgagatacgtactatCcccggtaccttgttttcttctactgcaatgcggccgcatttgctttgtccattgtggtcatcatcctcatcttaatccttgccgtcgtacacgagaagaaagggttatggatctccatgatcccactgcgggtggccatggtgctggatctgcttggcctcgtgggggcctatgctgctgggaccagccggggtgtgctaaaagccaagaatgcctgcgtgttagtcgccatttttgtctatatggctgttcaagttgtgctgacttcattccatgggaacctagaagtgttcagctgcacaggtgtcaaaaagaaggaagcaaaggggcaactggaatcagctgatggcaaaggggagataaacaaagaggaggaaaaagagcggcgccgcaagctccttctacttcttgctacatttgtgatgagcatcacatacctggctgggttgagcgcacctggtggctactgggacagcagcaaggagggccacattgcaggtgacccagtcatgcgggaacaccattctatccgcctgaaggcattcttcacctttaatgctattgcatttgtcatgtccctgctcatcattatgctgctcttagacaagcagctcgtcatcccactgctcaagggcaagaatcagaacaaaaccagcccagtacggacctttgtgctcaaagcatacatctttatcgctcttgtcggtcttgcgggggcctatgccaccggaagcagccgagaatgtgacactaccatctatgtgggcagtctggttcttgccgttcttgcatgcattattgtcctcaaggcgattatatcctgtcaggcatattcaaatgacaggtcaaacaatgttgaagaacagacgagcacaggcaattgtagagcacagataaacacaagcaatggtggtgcagagtctctctcaagcaatggtggtgcagagtctgtctcaagcaatggtggtgcagagtctgtctcaagcaatgctagagcacagccaaccacaaccaatggtggtgaagagacgaagacaagcaatgctggagcacagaagaacacaagaaatgcagattttatggatcaggctcaatctcttgttgtactgctttcaacccttgtagcaaccgtcgcataccaagcaggactggtccctcctggtggtgtttggcaggacaactggaacggacatgaggctggcgattcaatactcctatccatgcaaccagaacgttacagggtattcttttactgcaactcaatagccttcgcagcgtccttggtcatcatcatcttggtccagtataagcctatactcaagctccgcgtactccagtttgccatgatattggatctgtttggcctcattggtgcatactcttctgggagctgccgagatgtaaccacatccatttatgtcattgccttggctggagctgtcctaatctatgtggttattcatgttctgtttgtcacgctcgaagatgaagacatacgaaaggaaggcagggagaaggaccagaaacttgaggacaagagacgcaagaggttgctcctttttgctgtcttgtgtgtgacacttacttaccaagctgggttgaccccaccaggcggaTtttggctgatggatgatgagtttgggcaccatgcaggtgaccctgtcctcttttacaactatccacgccgttataaggctttcttctactgcaattcaatgagcttcatgtcatcgattgccctaattatactccttgtgaatccgaacctgtacaggccagccatacgaagttatgctctctcagtttgcactgcggtaggcatgtttgcgcttttgtgtgcctatgctgctggaagcactcagcacctgaaaacatccatctatatctttggtttggtgctgttggtattcttcattatgatcgtactcctaatatattcctattggagacagaaaagaatcatgtcacataacaaagaagatacagaaaaaggaaagtcccctggcacacaaaatgaggatatcacaaaacaagacagtaaaacagtgaagcctactgggacaaaatctgatgtagaaatggaagaagatgacataacagcgaagtccactaagttaaaagaaaatgacagcacaggaaagtcctctgaaatagaagatgagggtgaagccaaacaaaatagattagaacattctattgagagagcaaaacaagaaacagccacagagtctcccaagaaagaggacaaatcaaaaaagaaacatgccacacgcaaatacttgatgctgctaggagtcttggctgcaagtgttacttaccaggccggtctcaacccacccggcggtgtgtggcagggaaatagtaatgatcatgcagcaggtaacccagttatgcatgacaaaaaaagataccgttatctcatcttcttttacagcaactctacttcatttgtggcatccattgttgttatcatcctgttgctaccagagaaactgctgggggaggcatggtcacttaatgtgatgaacataacgattgtgttggacttacttggcctcctactagcctacatggctggctcaagaatgaggttgcagtcttctggatatttcgtcgtgtttgttataggtgcactaggctttgctgcaattcacaagatttggtcatatttgcaaaggaaaagaaatgatcagcacagactgttagaccaacccagatag
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| Protein seq | MANQQSLEKSKDEHRPLEYCLRKYLLLLAIMVATVTYAAGFNPPGGVWQNTEAGHLAGESIIRDTYYPRYLVFFYCNAAAFALSIVVIILILILAVVHEKKGLWISMIPLRVAMVLDLLGLVGAYAAGTSRGVLKAKNACVLVAIFVYMAVQVVLTSFHGNLEVFSCTGVKKKEAKGQLESADGKGEINKEEEKERRRKLLLLLATFVMSITYLAGLSAPGGYWDSSKEGHIAGDPVMREHHSIRLKAFFTFNAIAFVMSLLIIMLLLDKQLVIPLLKGKNQNKTSPVRTFVLKAYIFIALVGLAGAYATGSSRECDTTIYVGSLVLAVLACIIVLKAIISCQAYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNGGAESVSSNARAQPTTTNGGEETKTSNAGAQKNTRNADFMDQAQSLVVLLSTLVATVAYQAGLVPPGGVWQDNWNGHEAGDSILLSMQPERYRVFFYCNSIAFAASLVIIILVQYKPILKLRVLQFAMILDLFGLIGAYSSGSCRDVTTSIYVIALAGAVLIYVVIHVLFVTLEDEDIRKEGREKDQKLEDKRRKRLLLFAVLCVTLTYQAGLTPPGGFWLMDDEFGHHAGDPVLFYNYPRRYKAFFYCNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLCAYAAGSTQHLKTSIYIFGLVLLVFFIMIVLLIYSYWRQKRIMSHNKEDTEKGKSPGTQNEDITKQDSKTVKPTGTKSDVEMEEDDITAKSTKLKENDSTGKSSEIEDEGEAKQNRLEHSIERAKQETATESPKKEDKSKKKHATRKYLMLLGVLAASVTYQAGLNPPGGVWQGNSNDHAAGNPVMHDKKRYRYLIFFYSNSTSFVASIVVIILLLPEKLLGEAWSLNVMNITIVLDLLGLLLAYMAGSRMRLQSSGYFVVFVIGALGFAAIHKIWSYLQRKRNDQHRLLDQPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0031730 | OsLiXu_Ung0031730.01 | ChrUN-Ctg234 | 433333 | 436416 | + | NAM | ||
| CDS seq | atggcgaatcagcagtcgttagagaaatccaaagatgaacacagaccattggagtattgcttgcggaagtacctcttgctgctggccattatggtggccacggtgacttatgctgccgggttcaacccgccggggggtgtctggcagaataccgaggccgggcacctcgccggtgagtccatcatccgagatacgtactatCcccggtaccttgttttcttctactgcaatgcggccgcatttgctttgtccattgtggtcatcatcctcatcttaatccttgccgtcgtacacgagaagaaagggttatggatctccatgatcccactgcgggtggccatggtgctggatctgcttggcctcgtgggggcctatgctgctgggaccagccggggtgtgctaaaagccaagaatgcctgcgtgttagtcgccatttttgtctatatggctgttcaagttgtgctgacttcattccatgggaacctagaagtgttcagctgcacaggtgtcaaaaagaaggaagcaaaggggcaactggaatcagctgatggcaaaggggagataaacaaagaggaggaaaaagagcggcgccgcaagctccttctacttcttgctacatttgtgatgagcatcacatacctggctgggttgagcgcacctggtggctactgggacagcagcaaggagggccacattgcaggtgacccagtcatgcgggaacaccattctatccgcctgaaggcattcttcacctttaatgctattgcatttgtcatgtccctgctcatcattatgctgctcttagacaagcagctcgtcatcccactgctcaagggcaagaatcagaacaaaaccagcccagtacggacctttgtgctcaaagcatacatctttatcgctcttgtcggtcttgcgggggcctatgccaccggaagcagccgagaatgtgacactaccatctatgtgggcagtctggttcttgccgttcttgcatgcattattgtcctcaaggcgattatatcctgtcaggcatattcaaatgacaggtcaaacaatgttgaagaacagacgagcacaggcaattgtagagcacagataaacacaagcaatggtggtgcagagtctctctcaagcaatggtggtgcagagtctgtctcaagcaatggtggtgcagagtctgtctcaagcaatgctagagcacagccaaccacaaccaatggtggtgaagagacgaagacaagcaatgctggagcacagaagaacacaagaaatgcagattttatggatcaggctcaatctcttgttgtactgctttcaacccttgtagcaaccgtcgcataccaagcaggactggtccctcctggtggtgtttggcaggacaactggaacggacatgaggctggcgattcaatactcctatccatgcaaccagaacgttacagggtattcttttactgcaactcaatagccttcgcagcgtccttggtcatcatcatcttggtccagtataagcctatactcaagctccgcgtactccagtttgccatgatattggatctgtttggcctcattggtgcatactcttctgggagctgccgagatgtaaccacatccatttatgtcattgccttggctggagctgtcctaatctatgtggttattcatgttctgtttgtcacgctcgaagatgaagacatacgaaaggaaggcagggagaaggaccagaaacttgaggacaagagacgcaagaggttgctcctttttgctgtcttgtgtgtgacacttacttaccaagctgggttgaccccaccaggcggaTtttggctgatggatgatgagtttgggcaccatgcaggtgaccctgtcctcttttacaactatccacgccgttataaggctttcttctactgcaattcaatgagcttcatgtcatcgattgccctaattatactccttgtgaatccgaacctgtacaggccagccatacgaagttatgctctctcagtttgcactgcggtaggcatgtttgcgcttttgtgtgcctatgctgctggaagcactcagcacctgaaaacatccatctatatctttggtttggtgctgttggtattcttcattatgatcgtactcctaatatattcctattggagacagaaaagaatcatgtcacataacaaagaagatacagaaaaaggaaagtcccctggcacacaaaatgaggatatcacaaaacaagacagtaaaacagtgaagcctactgggacaaaatctgatgtagaaatggaagaagatgacataacagcgaagtccactaagttaaaagaaaatgacagcacaggaaagtcctctgaaatagaagatgagggtgaagccaaacaaaatagattagaacattctattgagagagcaaaacaagaaacagccacagagtctcccaagaaagaggacaaatcaaaaaagaaacatgccacacgcaaatacttgatgctgctaggagtcttggctgcaagtgttacttaccaggccggtctcaacccacccggcggtgtgtggcagggaaatagtaatgatcatgcagcaggtaacccagttatgcatgacaaaaaaagataccgttatctcatcttcttttacagcaactctacttcatttgtggcatccattgttgttatcatcctgttgctaccagagaaactgctgggggaggcatggtcacttaatgtgatgaacataacgattgtgttggacttacttggcctcctactagcctacatggctggctcaagaatgaggttgcagtcttctggatatttcgtcgtgtttgttataggtgcactaggctttgctgcaattcacaagatttggtcatatttgcaaaggaaaagaaatgatcagcacagactgttagaccaacccagatag
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| Protein seq | MANQQSLEKSKDEHRPLEYCLRKYLLLLAIMVATVTYAAGFNPPGGVWQNTEAGHLAGESIIRDTYYPRYLVFFYCNAAAFALSIVVIILILILAVVHEKKGLWISMIPLRVAMVLDLLGLVGAYAAGTSRGVLKAKNACVLVAIFVYMAVQVVLTSFHGNLEVFSCTGVKKKEAKGQLESADGKGEINKEEEKERRRKLLLLLATFVMSITYLAGLSAPGGYWDSSKEGHIAGDPVMREHHSIRLKAFFTFNAIAFVMSLLIIMLLLDKQLVIPLLKGKNQNKTSPVRTFVLKAYIFIALVGLAGAYATGSSRECDTTIYVGSLVLAVLACIIVLKAIISCQAYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNGGAESVSSNARAQPTTTNGGEETKTSNAGAQKNTRNADFMDQAQSLVVLLSTLVATVAYQAGLVPPGGVWQDNWNGHEAGDSILLSMQPERYRVFFYCNSIAFAASLVIIILVQYKPILKLRVLQFAMILDLFGLIGAYSSGSCRDVTTSIYVIALAGAVLIYVVIHVLFVTLEDEDIRKEGREKDQKLEDKRRKRLLLFAVLCVTLTYQAGLTPPGGFWLMDDEFGHHAGDPVLFYNYPRRYKAFFYCNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLCAYAAGSTQHLKTSIYIFGLVLLVFFIMIVLLIYSYWRQKRIMSHNKEDTEKGKSPGTQNEDITKQDSKTVKPTGTKSDVEMEEDDITAKSTKLKENDSTGKSSEIEDEGEAKQNRLEHSIERAKQETATESPKKEDKSKKKHATRKYLMLLGVLAASVTYQAGLNPPGGVWQGNSNDHAAGNPVMHDKKRYRYLIFFYSNSTSFVASIVVIILLLPEKLLGEAWSLNVMNITIVLDLLGLLLAYMAGSRMRLQSSGYFVVFVIGALGFAAIHKIWSYLQRKRNDQHRLLDQPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050579 | 0.0 | 0.185707 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0296700 | SBH | 0.345541 | 0.431254 | 0.632676 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g19170 | SBH | 0.238846 | 0.130991 | 0.427390 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0295300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012170 | SBH | 0.0 | 1.794282 | 2.390563 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012030 | SBH | 0.043965 | 0.366820 | 1.166659 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012110 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012210 | SBH | 0.715332 | 1.110616 | 3.664020 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0179300 | SBH | 0.397658 | 1.959379 | 0.545664 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011690 | SBH | 0.033113 | 0.037773 | 0.205996 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0174300 | SBH | 0.772369 | 3.371742 | 3.8299045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012260 | SBH | 0.025484 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012110 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011920 | SBH | 0.0 | 4.317440 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012340 | RBH | 0.0 | 0.162692 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012010 | SBH | 0.000000 | 0.942838 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011860 | SBH | 0.203737 | 0.599884 | 0.513017 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012200 | SBH | 0.0 | 3.387568 | 2.281352 |
