Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0011540 | OGI:03075690 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg93:246606-247064 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagccggcgggagcagtggcggcgccggcgccggcgagcggcggcgcggtggcgttcgcgtgggagcacgagccgggggtgtcgaagctgctgcagggcaccgccacgacggcggcgggagaagccgagaagctgccgccggcgaagaaggaggcggtgccgcacaggatacgagtgcgtccgccgccgggggcggcgggtcggggcggccggcgaggcggcggcggcgccgccgccgtgcggccggaggaggacccgttcctcgcggcgttcctggcgtgcaccgagcgcgggaacagggggacgcccaagggtgggagcaagctgctcgggctcgggcttgggcttgggtccgggctcgggctcgggctgtcgtgcaaggggcccggcggtgtggtgcagagcgtggtgaggctggctaagacgatgcctcctcaagccctgaacgacgattga
More
|
||||||||||
| CDS seq | atgaagccggcgggagcagtggcggcgccggcgccggcgagcggcggcgcggtggcgttcgcgtgggagcacgagccgggggtgtcgaagctgctgcagggcaccgccacgacggcggcgggagaagccgagaagctgccgccggcgaagaaggaggcggtgccgcacaggatacgagtgcgtccgccgccgggggcggcgggtcggggcggccggcgaggcggcggcggcgccgccgccgtgcggccggaggaggacccgttcctcgcggcgttcctggcgtgcaccgagcgcgggaacagggggacgcccaagggtgggagcaagctgctcgggctcgggcttgggcttgggtccgggctcgggctcgggctgtcgtgcaaggggcccggcggtgtggtgcagagcgtggtgaggctggctaagacgatgcctcctcaagccctgaacgacgattga
More
|
||||||||||
| Protein seq | MKPAGAVAAPAPASGGAVAFAWEHEPGVSKLLQGTATTAAGEAEKLPPAKKEAVPHRIRVRPPPGAAGRGGRRGGGGAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGGVVQSVVRLAKTMPPQALNDD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0011540 | OsLiXu_Ung0011540.01 | ChrUN-Ctg93 | 246606 | 247064 | + | NAM | ||
| CDS seq | atgaagccggcgggagcagtggcggcgccggcgccggcgagcggcggcgcggtggcgttcgcgtgggagcacgagccgggggtgtcgaagctgctgcagggcaccgccacgacggcggcgggagaagccgagaagctgccgccggcgaagaaggaggcggtgccgcacaggatacgagtgcgtccgccgccgggggcggcgggtcggggcggccggcgaggcggcggcggcgccgccgccgtgcggccggaggaggacccgttcctcgcggcgttcctggcgtgcaccgagcgcgggaacagggggacgcccaagggtgggagcaagctgctcgggctcgggcttgggcttgggtccgggctcgggctcgggctgtcgtgcaaggggcccggcggtgtggtgcagagcgtggtgaggctggctaagacgatgcctcctcaagccctgaacgacgattga
More
|
|||||||
| Protein seq | MKPAGAVAAPAPASGGAVAFAWEHEPGVSKLLQGTATTAAGEAEKLPPAKKEAVPHRIRVRPPPGAAGRGGRRGGGGAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGGVVQSVVRLAKTMPPQALNDD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0674900 | SBH | 0.0 | 0.674604 | 1.910922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47160 | SBH | 0.0 | 0.411454 | 0.506735 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0674900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029690 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029410 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029470 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029570 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029300 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0460900 | SBH | 0.303702 | 0.190134 | 0.0117315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029020 | SBH | 0.0 | 0.0 | 0.292992 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0461800 | SBH | 0.0821715 | 0.4777895 | 0.020194 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029340 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029410 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029090 | SBH | 0.191860 | 0.0 | 0.931876 |
