Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0674900 | OGI:03075690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:26691176-26691905 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCTGCTAGCTCTGACCACCGTCTCCAAAAACCATCCACGATTATATATAAGCTGGTTGAGATCTCTAGCTAGGTAGAGCCCGGAGAGTACGTGTGAGATGAAGCCGGCGGGAGCAGTGGCGGCGCCGGCGCCGGCGAGCGGCGGCGCGGTGGCGTTCGCGTGGGAGCACGAGCCGGGGGTGTCGAAGCTGCTGCAGGGCACCGCCACGACGGCGGCGGGAGAAGCCGAGAAGCTGCCGCCGGCGAAGAAGGAGGCGGTGCCGCACAGTATACGAGTGCGTCCGCCGCCGGGGGCGGCGGGTCGGGGCGGCCGGCGAGGCGGCGGCGCCGCTGCCGCCGTGCGGCCGGAGGAGGACCCGTTCCTCGCGGCGTTCCTGGCGTGCACCGAGCGCGGGAACAGGGGGACGCCCAAGGGTGGGAGCAAGCTGCTCGGGCTCGGGCTTGGGCTTGGGTCCGGGCTCGGGCTCGGGCTGTCGTGCAAGGGGCCCGGCGGTGTGGTGCAGAGCGTGGTGAGGCTGGCTAAGACGATGCCTCCTCAAGCCCTGAACGACGATTGAATCAAGTTGATCACGCCATTTTTCTGGCCTTATGGTTTACTGTAAATAGATTAAAGTATTACCGTTTTATTTTTATTTTTTTTGACCGGAACAAATTAAAGCTCGTTATGTTCGTATGCTCGTGAATCGATCACCAAAGACTTCACCTGCTATAAAATCTCTCTTGTTTTCTT
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| CDS seq | ATGAAGCCGGCGGGAGCAGTGGCGGCGCCGGCGCCGGCGAGCGGCGGCGCGGTGGCGTTCGCGTGGGAGCACGAGCCGGGGGTGTCGAAGCTGCTGCAGGGCACCGCCACGACGGCGGCGGGAGAAGCCGAGAAGCTGCCGCCGGCGAAGAAGGAGGCGGTGCCGCACAGTATACGAGTGCGTCCGCCGCCGGGGGCGGCGGGTCGGGGCGGCCGGCGAGGCGGCGGCGCCGCTGCCGCCGTGCGGCCGGAGGAGGACCCGTTCCTCGCGGCGTTCCTGGCGTGCACCGAGCGCGGGAACAGGGGGACGCCCAAGGGTGGGAGCAAGCTGCTCGGGCTCGGGCTTGGGCTTGGGTCCGGGCTCGGGCTCGGGCTGTCGTGCAAGGGGCCCGGCGGTGTGGTGCAGAGCGTGGTGAGGCTGGCTAAGACGATGCCTCCTCAAGCCCTGAACGACGATTGA
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| Protein seq | MKPAGAVAAPAPASGGAVAFAWEHEPGVSKLLQGTATTAAGEAEKLPPAKKEAVPHSIRVRPPPGAAGRGGRRGGGAAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGGVVQSVVRLAKTMPPQALNDD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0674900 | Os03t0674900-00 | Chr03 | 26691176 | 26691905 | + | irgsp1_rep | ||
| CDS seq | ATGAAGCCGGCGGGAGCAGTGGCGGCGCCGGCGCCGGCGAGCGGCGGCGCGGTGGCGTTCGCGTGGGAGCACGAGCCGGGGGTGTCGAAGCTGCTGCAGGGCACCGCCACGACGGCGGCGGGAGAAGCCGAGAAGCTGCCGCCGGCGAAGAAGGAGGCGGTGCCGCACAGTATACGAGTGCGTCCGCCGCCGGGGGCGGCGGGTCGGGGCGGCCGGCGAGGCGGCGGCGCCGCTGCCGCCGTGCGGCCGGAGGAGGACCCGTTCCTCGCGGCGTTCCTGGCGTGCACCGAGCGCGGGAACAGGGGGACGCCCAAGGGTGGGAGCAAGCTGCTCGGGCTCGGGCTTGGGCTTGGGTCCGGGCTCGGGCTCGGGCTGTCGTGCAAGGGGCCCGGCGGTGTGGTGCAGAGCGTGGTGAGGCTGGCTAAGACGATGCCTCCTCAAGCCCTGAACGACGATTGA
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| Protein seq | MKPAGAVAAPAPASGGAVAFAWEHEPGVSKLLQGTATTAAGEAEKLPPAKKEAVPHSIRVRPPPGAAGRGGRRGGGAAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGGVVQSVVRLAKTMPPQALNDD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0674900 | RBH | 0.0 | 0.674604 | 1.910922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47160 | RBH | 0.0 | 0.411454 | 0.506735 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0634000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029410 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029300 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0460900 | RBH | 0.303702 | 0.190134 | 0.0117315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029020 | RBH | 0.0 | 0.0 | 0.292992 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0461800 | RBH | 0.0821715 | 0.4777895 | 0.020194 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029090 | RBH | 0.191860 | 0.0 | 0.931876 |
