Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0004250 | OGI:99012820 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg48:158471-159253 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagaagcatagtacatgcttgataacacagtttgctcccttaaaattgttcttgagagctgaagcaaagcacattcgattgggataagcaaggtgagaaatgttttggcaatcaaagatcggatttgccctttctaaaagtctagcttcttttgttaatttgtcaagcattttgttaatctctcttggaatccagtaaaccttcataaaatcctgtggaaagtcaattatcatttgggaccataacggtcgtaggctccaatgtcctgagtctggttcgaaatccttcttcttgatggtatctgcaatcgttgcattgtccatgaggaaaaccgtacctgcaaagtcaagacattttgctacctccaaagcaaactgtaaagctattaattcagcttgcaagggcgagctagcagaagtgctgaaggccttaataaagattgcattatgattagttggcatatgaaagaaaacaccaactcctgtcaaaccctctccccaagcagcatcaatgcagcatccattcccttgtggaattggctcttttttcctgctctgttctcctgggggctcttcatcctgtaaacaatcattagatagaaatttgtggtagctattcgccatagcctcagcttaaaaacacacttgagagggctctctgaattttgcttgaaatttgaagtcattcctggctttccagatatgccacataagggctagaatcctgcaaagacctatattgccattgccattatttatcatgaaagaaatgatgtgagccat
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| CDS seq | atggctcacatcatttctttcatgataaataatggcaatggcaatataggtctttgcaggattctagcccttatgtggcatatctggaaagccaggaatgacttcaaatttcaagcaaaattcagagagccctctcaagatgaagagcccccaggagaacagagcaggaaaaaagagccaattccacaagggaatggatgctgcattgatgctgcttggggagagggtttgacaggagttggtgttttctttcatatgccaactaatcataatgcaatctttattaaggccttcagcacttctgctagctcgcccttgcaagctgaattaatagctttacagtttgctttggaggtagcaaaatgtcttgactttgcaggtacggttttcctcatggacaatgcaacgattgcagataccatcaagaagaaggatttcgaaccagactcaggacattggagcctacgaccgttatggtcccaaatgataattgactttccacaggattttatgaaggtttactggattccaagagagattaacaaaatgcttgacaaattaacaaaagaagctagacttttagaaagggcaaatccgatctttgattgccaaaacatttctcaccttgcttatcccaatcgaatgtgctttgcttcagctctcaagaacaattttaagggagcaaactgtgttatcaagcatgtactatgcttctag
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| Protein seq | MAHIISFMINNGNGNIGLCRILALMWHIWKARNDFKFQAKFREPSQDEEPPGEQSRKKEPIPQGNGCCIDAAWGEGLTGVGVFFHMPTNHNAIFIKAFSTSASSPLQAELIALQFALEVAKCLDFAGTVFLMDNATIADTIKKKDFEPDSGHWSLRPLWSQMIIDFPQDFMKVYWIPREINKMLDKLTKEARLLERANPIFDCQNISHLAYPNRMCFASALKNNFKGANCVIKHVLCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0004250 | OsLiXu_Ung0004250.01 | ChrUN-Ctg48 | 158471 | 159253 | - | NAM | ||
| CDS seq | atggctcacatcatttctttcatgataaataatggcaatggcaatataggtctttgcaggattctagcccttatgtggcatatctggaaagccaggaatgacttcaaatttcaagcaaaattcagagagccctctcaagatgaagagcccccaggagaacagagcaggaaaaaagagccaattccacaagggaatggatgctgcattgatgctgcttggggagagggtttgacaggagttggtgttttctttcatatgccaactaatcataatgcaatctttattaaggccttcagcacttctgctagctcgcccttgcaagctgaattaatagctttacagtttgctttggaggtagcaaaatgtcttgactttgcaggtacggttttcctcatggacaatgcaacgattgcagataccatcaagaagaaggatttcgaaccagactcaggacattggagcctacgaccgttatggtcccaaatgataattgactttccacaggattttatgaaggtttactggattccaagagagattaacaaaatgcttgacaaattaacaaaagaagctagacttttagaaagggcaaatccgatctttgattgccaaaacatttctcaccttgcttatcccaatcgaatgtgctttgcttcagctctcaagaacaattttaagggagcaaactgtgttatcaagcatgtactatgcttctag
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| Protein seq | MAHIISFMINNGNGNIGLCRILALMWHIWKARNDFKFQAKFREPSQDEEPPGEQSRKKEPIPQGNGCCIDAAWGEGLTGVGVFFHMPTNHNAIFIKAFSTSASSPLQAELIALQFALEVAKCLDFAGTVFLMDNATIADTIKKKDFEPDSGHWSLRPLWSQMIIDFPQDFMKVYWIPREINKMLDKLTKEARLLERANPIFDCQNISHLAYPNRMCFASALKNNFKGANCVIKHVLCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73060 | SBH | 0.365680 | 0.0 | 0.079497 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047260 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046840 | SBH | 0.000000 | 0.000000 | 2.782876 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0696200 | SBH | 1.597524 | 2.175898 | 2.0641455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046320 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0695900 | SBH | 0.9988825 | 1.8171055 | 2.4165555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046910 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046760 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047070 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047050 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046810 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047100 | SBH | 0.000000 | 0.813570 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046870 | SBH | 0.000000 | 0.000000 | 0.000000 |
