Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g73060 | OGI:01124430 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:42388274-42390062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCTGATGATAAATCTGTTTTTTTTTTTTTGGAATATCCATTGACCAGGTATACCTTAGTGTATTACTTAGGTTATGTACCATCATTTTTCAGTAAATACATAATTACCATCACTTGTATTGAATACATAACTATTGCCGATGCTCTCCTAATGGTCTTGTTGATATTACTATGAGAAAATTGGCAGTAAGAAGATTGAAGGAACTCAGGTGCCGCTCAGGAACCTCGAGCTGGTGTTGGTTAACAAGTCCTGTGTTTAGTGGAAACGCCAGTATTTTTGTTCAGTAAAATAGATGTTGGCAGTGGTCGCGAAAAGACAATCAGATGATGTAATCAGTACATGCCTTCCATGCTGGTCTCCCCAGCATGAACACCTTTTCTGCGAAAAAGGAAACGATATCCTTTTTTTTGTTTTATCCCTTTTTTGACTGCCGTGTACGGAGTAGTATTACTGTTACACATGCTCCAAATCCAGTCCACAATATTATACTAGCTGTCTTTTTAGGTTTTTCCTTTGGACGTCGTGTCCTAGTGAAGTGAAGGAAGAAATGAGTAGTTATGAGGTTTATCGCTTCTTTTTTTTTGAAAACCAAGCTTTTATATTAACTAGAAGCATAGTACATGCTTGATAACACAGTTTGCTCCCTTAAAATTGTTCTTGAGAGCTGAAGCAAAGCACATTCGATTGGGATAAGCAAGGTGAGAAATGTTTTGGCAATCAAAGATCGGATTTGCCCTTTCTAAAAGTCTAGCTTCTTTTGTTAATTTGTCAAGCATTTTGTTAATCTCTCTTGGAATCCAGTAAACCTTCATAAAATCCTGTGGAAAGTCAATTATCATTTGGGACCATAACGGTCGTAGGCTCCAATGTCCTGAGTCTGGTTCGAAATCCTTCTTCTTGATGGTATCTGCAATCGTTGCATTGTCCATGAGGAAAACCGTACCTGCAAAGTCAAGACATTTTGCTACCTCCAAAGCAAACTGTAAAGCTATTAATTCAGCTTGCAAGGGCGAGCTAGCAGAAGTGCTGAAGGCCTTAATAAAGATTGCATTATGATTAGTTGGCATATGAAAGAAAACACCAACTCCTGTCAAACCCTCTCCCCAAGCAGCATCAATGCAGCATCCATTCCCTTGTGGAATTGGCTCTTTTTTCCTGCTCTGTTCTCCTGGGGGCTCTTCATCCTGTAAACAATCATTAGATAGAAATTTGTGGTAGCTATTCGCCATAGCCTCAGCTTAAAAACACACTTGAGAGGGCTCTCTGAATTTTGCTTGAAATTTGAAGTCATTCCTGGCTTTCCAGATATGCCACATAAGGGCTAGAATCCTGCAAAGACCTATATTGCCATTGCCATTATTTATCATGAAAGAAATGATGTGAGCCATCGGTGCATTATCAGGAAATCTATCAATAAAGCAATTCAGGTCAGATATCATTCAAACCAGTTTCAACCTGTCCACATCTGCAACAATTTTCAGAAATGTCATTGATCCTGTGACGGAGTCTGCCAGCTCTGGGAAGTGCTTCCCTGATGAGCCTCCAAGCAAAAATTTTTACTTTTGGAGGGATTATCTTGTGTTTCCAAATTTGTTTAATCACAGCAATAACCTGCCTACTTACCTGGTGGGTGATAGGGTTATCTCTCTTCATGAATTCCTTATAAGCACTCTTTGTGTTGCAGTCACCAATCCTACTGTGCTTCCAGTATAATCTGTCTTCGCTGTCACCTGGCATGATTTGAACCTGCAAGATTTTATTGGCAGCCTCCTCCTCCTCCTCCTCCAT
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| CDS seq | ATGGAGGAGGAGGAGGAGGAGGCTGCCAATAAAATCTTGCAGGTTCAAATCATGCCAGGTGACAGCGAAGACAGATTATACTGGAAGCACAGTAGGATTGGTGACTGCAACACAAAGAGTGCTTATAAGGAATTCATGAAGAGAGATAACCCTATCACCCACCAGGATGAAGAGCCCCCAGGAGAACAGAGCAGGAAAAAAGAGCCAATTCCACAAGGGAATGGATGCTGCATTGATGCTGCTTGGGGAGAGGGTTTGACAGGAGTTGGTGTTTTCTTTCATATGCCAACTAATCATAATGCAATCTTTATTAAGGCCTTCAGCACTTCTGCTAGCTCGCCCTTGCAAGCTGAATTAATAGCTTTACAGTTTGCTTTGGAGGTAGCAAAATGTCTTGACTTTGCAGGTACGGTTTTCCTCATGGACAATGCAACGATTGCAGATACCATCAAGAAGAAGGATTTCGAACCAGACTCAGGACATTGGAGCCTACGACCGTTATGGTCCCAAATGATAATTGACTTTCCACAGGATTTTATGAAGGTTTACTGGATTCCAAGAGAGATTAACAAAATGCTTGACAAATTAACAAAAGAAGCTAGACTTTTAGAAAGGGCAAATCCGATCTTTGATTGCCAAAACATTTCTCACCTTGCTTATCCCAATCGAATGTGCTTTGCTTCAGCTCTCAAGAACAATTTTAAGGGAGCAAACTGTGTTATCAAGCATGTACTATGCTTCTAG
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| Protein seq | MEEEEEEAANKILQVQIMPGDSEDRLYWKHSRIGDCNTKSAYKEFMKRDNPITHQDEEPPGEQSRKKEPIPQGNGCCIDAAWGEGLTGVGVFFHMPTNHNAIFIKAFSTSASSPLQAELIALQFALEVAKCLDFAGTVFLMDNATIADTIKKKDFEPDSGHWSLRPLWSQMIIDFPQDFMKVYWIPREINKMLDKLTKEARLLERANPIFDCQNISHLAYPNRMCFASALKNNFKGANCVIKHVLCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g73060 | LOC_Os01g73060.1 | Chr01 | 42388274 | 42390062 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAGGAGGAGGAGGAGGCTGCCAATAAAATCTTGCAGGTTCAAATCATGCCAGGTGACAGCGAAGACAGATTATACTGGAAGCACAGTAGGATTGGTGACTGCAACACAAAGAGTGCTTATAAGGAATTCATGAAGAGAGATAACCCTATCACCCACCAGGATGAAGAGCCCCCAGGAGAACAGAGCAGGAAAAAAGAGCCAATTCCACAAGGGAATGGATGCTGCATTGATGCTGCTTGGGGAGAGGGTTTGACAGGAGTTGGTGTTTTCTTTCATATGCCAACTAATCATAATGCAATCTTTATTAAGGCCTTCAGCACTTCTGCTAGCTCGCCCTTGCAAGCTGAATTAATAGCTTTACAGTTTGCTTTGGAGGTAGCAAAATGTCTTGACTTTGCAGGTACGGTTTTCCTCATGGACAATGCAACGATTGCAGATACCATCAAGAAGAAGGATTTCGAACCAGACTCAGGACATTGGAGCCTACGACCGTTATGGTCCCAAATGATAATTGACTTTCCACAGGATTTTATGAAGGTTTACTGGATTCCAAGAGAGATTAACAAAATGCTTGACAAATTAACAAAAGAAGCTAGACTTTTAGAAAGGGCAAATCCGATCTTTGATTGCCAAAACATTTCTCACCTTGCTTATCCCAATCGAATGTGCTTTGCTTCAGCTCTCAAGAACAATTTTAAGGGAGCAAACTGTGTTATCAAGCATGTACTATGCTTCTAG
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| Protein seq | MEEEEEEAANKILQVQIMPGDSEDRLYWKHSRIGDCNTKSAYKEFMKRDNPITHQDEEPPGEQSRKKEPIPQGNGCCIDAAWGEGLTGVGVFFHMPTNHNAIFIKAFSTSASSPLQAELIALQFALEVAKCLDFAGTVFLMDNATIADTIKKKDFEPDSGHWSLRPLWSQMIIDFPQDFMKVYWIPREINKMLDKLTKEARLLERANPIFDCQNISHLAYPNRMCFASALKNNFKGANCVIKHVLCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.365680 | 0.0 | 0.079497 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020620 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047260 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046840 | RBH | 0.000000 | 0.000000 | 2.782876 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0696200 | RBH | 1.597524 | 2.175898 | 2.0641455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046320 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0695900 | RBH | 0.9988825 | 1.8171055 | 2.4165555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046760 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047050 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047100 | RBH | 0.000000 | 0.813570 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046870 | RBH | 0.000000 | 0.000000 | 0.000000 |
