Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0001110 | OGI:99004290 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg30:214714-216175 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcccctacctgcttcttcgccttgtactggttaccgctgatactcgcggcggcggtgaggggagctgatcaagaagatggaggctgcctggccagcaagaaatgcggcgacctgaatatctcctctccgttctggatcatccagggccaggcagataagccgtgtggttctctggatttccaggtatattgcaacaactccaccggcgtcgcaactcttcgaagctctacggacagcgggtttgatatcatcaacatatcatatggggaccgtactctgctcgtctttgatgtccatagactcgctcgcctgaatagctccactgactgccgtatcccagtatttaacaccttcgccaagctgcccgtcgcgtttacaatcagcccttccaatctcaacctcgtcttctacaactgcaccaaggcgccgtcggcggagcagcagcgacaactggggctcgtcgagacgagatgcggtaacaacgcgtttgctcggctgggagggcgtttcgacggaccgggcgactacgacaagtactatttggaaggctgcagcagcaacagcaccgtcttctcgccggtgctggagccgcctgatggcaaggctaacgccagcaggtatgtggagctcgtgcgtggaggcttcctcataacatgggacctgccagtgacatcttctggtaagttcaccctccctgcctccctgaaaagctgaaactattactaaaactattacgaacacgtttattggcatctctttgattctttcctcctgccatttcaaacaagaaaaccacagcggttggagaccagctaaccggccatgtcctatagacgagcgaatagatcagtaacaagtcacaatagagagatgagttagtttctttaattaagcacatgatattaattcattatatactctattcacaaccccgtccctcttcgcccttatctcggttaccctcagaagaaccggcagttcaagttccagatcatcgacatcttctacagcaacagctccttgcttgtcaccgatgtccgaaagaccgacgacttcgacaactccagtggctgccatgtcccgaggtccaacacctcctccaagctcggttggccattctcgattagccgtgtcaaccataatcttatcttctactcctctaggagataagattattctcggttgtgcatgcagttgtacaactgcatgcaccaagcttccgacggcagcggtgcggcgtctcctcggtctcgtcgagacgaaatgaagcaacaacacgttcgctcgcctcgaggagagttacaacgagtctgtacacttactagagggctgcgacgccgtgatcgtgccggtgaggggtagagatggcgaggcaaacgcgagcagctacgagcagctcatcagtgatggtttcctcttgacatggcagccgccggccgccgccgcagaagtctggtaa
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| CDS seq | atggcccctacctgcttcttcgccttgtactggttaccgctgatactcgcggcggcggtgaggggagctgatcaagaagatggaggctgcctggccagcaagaaatgcggcgacctgaatatctcctctccgttctggatcatccagggccaggcagataagccgtgtggttctctggatttccaggtatattgcaacaactccaccggcgtcgcaactcttcgaagctctacggacagcgggtttgatatcatcaacatatcatatggggaccgtactctgctcgtctttgatgtccatagactcgctcgcctgaatagctccactgactgccgtatcccagtatttaacaccttcgccaagctgcccgtcgcgtttacaatcagcccttccaatctcaacctcgtcttctacaactgcaccaaggcgccgtcggcggagcagcagcgacaactggggctcgtcgagacgagatgcggtaacaacgcgtttgctcggctgggagggcgtttcgacggaccgggcgactacgacaagtactatttggaaggctgcagcagcaacagcaccgtcttctcgccggtgctggagccgcctgatggcaaggctaacgccagcaggtatgtggagctcgtgcgtggaggcttcctcataacatgggacctgccaaagaaccggcagttcaagttccagatcatcgacatcttctacagcaacagctccttgcttgtcaccgatgtccgaaagaccgacgacttcgacaactccagtggctgccatgtcccgaggtccaacacctcctccaagctcgagggctgcgacgccgtgatcgtgccggtgaggggtagagatggcgaggcaaacgcgagcagctacgagcagctcatcagtgatggtttcctcttgacatggcagccgccggccgccgccgcagaagtctggtaa
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| Protein seq | MAPTCFFALYWLPLILAAAVRGADQEDGGCLASKKCGDLNISSPFWIIQGQADKPCGSLDFQVYCNNSTGVATLRSSTDSGFDIINISYGDRTLLVFDVHRLARLNSSTDCRIPVFNTFAKLPVAFTISPSNLNLVFYNCTKAPSAEQQRQLGLVETRCGNNAFARLGGRFDGPGDYDKYYLEGCSSNSTVFSPVLEPPDGKANASRYVELVRGGFLITWDLPKNRQFKFQIIDIFYSNSSLLVTDVRKTDDFDNSSGCHVPRSNTSSKLEGCDAVIVPVRGRDGEANASSYEQLISDGFLLTWQPPAAAAEVW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0001110 | OsLiXu_Ung0001110.01 | ChrUN-Ctg30 | 214714 | 216175 | + | NAM | ||
| CDS seq | atggcccctacctgcttcttcgccttgtactggttaccgctgatactcgcggcggcggtgaggggagctgatcaagaagatggaggctgcctggccagcaagaaatgcggcgacctgaatatctcctctccgttctggatcatccagggccaggcagataagccgtgtggttctctggatttccaggtatattgcaacaactccaccggcgtcgcaactcttcgaagctctacggacagcgggtttgatatcatcaacatatcatatggggaccgtactctgctcgtctttgatgtccatagactcgctcgcctgaatagctccactgactgccgtatcccagtatttaacaccttcgccaagctgcccgtcgcgtttacaatcagcccttccaatctcaacctcgtcttctacaactgcaccaaggcgccgtcggcggagcagcagcgacaactggggctcgtcgagacgagatgcggtaacaacgcgtttgctcggctgggagggcgtttcgacggaccgggcgactacgacaagtactatttggaaggctgcagcagcaacagcaccgtcttctcgccggtgctggagccgcctgatggcaaggctaacgccagcaggtatgtggagctcgtgcgtggaggcttcctcataacatgggacctgccaaagaaccggcagttcaagttccagatcatcgacatcttctacagcaacagctccttgcttgtcaccgatgtccgaaagaccgacgacttcgacaactccagtggctgccatgtcccgaggtccaacacctcctccaagctcgagggctgcgacgccgtgatcgtgccggtgaggggtagagatggcgaggcaaacgcgagcagctacgagcagctcatcagtgatggtttcctcttgacatggcagccgccggccgccgccgcagaagtctggtaa
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| Protein seq | MAPTCFFALYWLPLILAAAVRGADQEDGGCLASKKCGDLNISSPFWIIQGQADKPCGSLDFQVYCNNSTGVATLRSSTDSGFDIINISYGDRTLLVFDVHRLARLNSSTDCRIPVFNTFAKLPVAFTISPSNLNLVFYNCTKAPSAEQQRQLGLVETRCGNNAFARLGGRFDGPGDYDKYYLEGCSSNSTVFSPVLEPPDGKANASRYVELVRGGFLITWDLPKNRQFKFQIIDIFYSNSSLLVTDVRKTDDFDNSSGCHVPRSNTSSKLEGCDAVIVPVRGRDGEANASSYEQLISDGFLLTWQPPAAAAEVW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136500 | SBH | 1.404961 | 2.317796 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04530 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002580 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002630 | SBH | 2.596569 | 1.368594 | 1.500379 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002460 | SBH | 1.044627 | 0.183400 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002640 | SBH | 0.0 | 2.042083 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034000 | SBH | 0.461777 | 1.019504 | 0.7308405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002540 | SBH | 0.040325 | 0.0 | 0.025854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0036000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002350 | SBH | 0.985835 | 0.241587 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002620 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002640 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002580 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002750 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002590 | SBH | 0.993335 | 18.521654 | 2.071642 |
