Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0016290 | OGI:12024450 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:21316228-21321243 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acccgttttggttgacttgtgttgacctagccgagtgactcggtttttactatactgccctttggctgcacaaccttttatcagtcgatccccaccgccggcggccatcgtccccggcgttcatctccgtccgccggcgtgctcctcgccccgcatcagcttcgtccgtcgcggctctccggcagcctcaccctcaccccgccgtccctcgtcccggctgccttgcccctcctcgcccatcgccgacgagaaggtattgcagttctctcgcatgttgctccctagatggataatcTttttttgctttattgggcagcgaaatgggctgtttggatttgtgagccggtcaacgcaagtcaacaaaatcggaaaaagctttttgtgctatatggaactgaaatcgtgaaattttgatgctatcgaatcaattttatttttcttgttttaaacttaggtgactgactgtcccaaagtacccaacagttagcttaacttttctgctgttcagctcagatgctttcccattgtacacatatagtataatgtcaacttgatctattgggattcgatttgagaaaacggaatattattgttgacaatcgaatttggcactaaggccaaatttgtaacaaatatttaggtgaatctgtattggcccgaaaaggcaccaacaattatttatgctgacaaccagattagatgtttacggaattacggtaaaactaactccagccaagctagccgaggcctttgcttcctcaccatatgttttttttttCttttgactttctcaaacaatcaactgaacagattttgacaaaaccaaagtcagcctatcttgcttgatgttaatcaaaactgattaaatttaataggatggacatatttatgttatgaatgaccatgctccttgtagatcagtttttttttccattctcggcgtgcatcttcagcctttattatgtactgagtatacaacgaatagaattctgagcatgcgggcttacatattggctttgttgcgttgcagacttgcagttggcctccactctgcacatctgcaagggaagaatgactagtggaatggagcccgttgatgactcagagtgggaggaagttagctccatcaacaactacgcgctgttcatgggacacatgtctatggccgtcaaggggctgggttatcttcttgttttatggaccactgttatccttcttggtggctttgtctccatactggggaagaaggatttttggtgtctcacaataattacccttgtccagaccgctgggttagtctcttcgcaatgctcaatatcttaattttatattttactcccataaaacatttattttggagctatattttctgctaagacagttccactttctaaatattcagtcactggcaagtagtttacatcccctgatgaaaagttcatgtgggcatatccattcagtcactggcatgtaggacatcaggagctaaaatctagagctagcaaatctcaatagcttaacaactgttcgagtattgggcaattctcctttttgagtcgaattctagagctagcAaacctcaacaattaaattcattgcgagttagaaaggtctcccttttggtgtaagtgccttttgacgtttcgtcaactttatcagttatggtacaaacttcaggctaagaccaatacaaaaatggccatactaataccgcgatgagcataattagctaactcatgcacaatctggcctattccaaacatgattgcattctttatcttgtaatctctctcaattgtgagaagagcttcattcctcaattaggtaaacatacctctatatatcgtcctacctgagcatgaaactccaccattactcagtgcgtccatgtagtgcactgatcttcaaactctactagtgcctcagttGggttgtctagccaagctccaaactcctccaccgctgacaaggtcgtttgtgcaacatcaagtgccaaactccatcgtgggatggattgcacatgtaattttgaagccaaatacatatctgtaataattagtattttttgaactttgaattattattgaactttttagtatataatggatcagggctgttgtgtcgaagacacacaaaggccaggaatgaatagaaaacttacattaatccatttcaaacttcaaaattataatggatcggttttttcccctgcaaggatagagatttaaaagtttattttgtatatgaatacatatgaaaaatgtaagtatctgatggctgttgatatgtgttttccaaaaaaaaaatattagtgctagataggttcaaaatctatgtaatcctgataagcgtgaaatgcacggatttaccaccagccTAtatagcttttggttacttatctcaccatctaactggaacaatgaaatttacccacagagtctccgacatctttctgaacgaaaagctacgatatacttggaggtcgttcttaggctttttctcagctacggatacattggaaacggaaaggggtgccattagctggttctatggccgatcacggtcacgctcctactacctgaacaacctagtagtagttgccatatggctgctccatttgttcgtgtttgccgccatcatctgccctctagcagtgctctacatgtttgggctgatcatcaccactgccatatccgcgtgtcgtctgatacagcatgactacgggggtgaggtcaacaatggcggtgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctccagggtgtgctcttctgttaccggttcacattgtgctatgagcagaaaaggctggtggatttggtggttaacaaatatcactttgttgctagtttgagcgagtcagtgatggcgtacatgcaagagacgatgatcgggtgtgagaaggacccgccattcgtcaaaggaaggaacctggtcacctatgccgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgccaatgtacaagtacaatttctttctcgaggtcgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtatgagggcagacaatgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcctgctagccaaaatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcatggtacagaacagtgcgtgcttcgatggttgtgattctccggcttgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagtatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatctacacacgaatgcacgagcacacgctttctaacattgcgacgagggaatatttcattgagaaattgctgctcatcttcactcaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccgcgaaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtatactctgtttgaggcaagaaaagaaacacttgctttatttttttatcagcatcatatataggttgataattagtcttctgatggatcgttacgcttgtcatactgaagataaacataatgttgcaggtgcttgtgagaacacttcgtgccgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggatgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacgaattgaagcttatcactgagatattcatactaatcgttagacatggaggccgttacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggctgtagcagcagcctaaagactcttggttcccttgtgaaagaagctgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagataaattaaatcgtacataatctgtattattttaatccataccctcattggaaaactgtgccggggaaatctgataatcgatctgaaaaccgaaattaaaaattactcgtgccggccagtaataaaatcaaagtgaaaatcggcctttaatcagctgaggccaatgtatagtatttttttcttacacttttgtacattccattttgctgctcttctcttctttttttctactctttcccaatcatgtaacaatgtaacttatcatttctatcaatgaaatggctataaggtagagctggctctacgtccttatgttt
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| CDS seq | atgactagtggaatggagcccgttgatgactcagagtgggaggaagttagctccatcaacaactacgcgctgttcatgggacacatgtctatggccgtcaaggggctgggttatcttcttgttttatggaccactgttatccttcttggtggctttgtctccatactggggaagaaggatttttggtgtctcacaataattacccttgtccagaccgctggagtctccgacatctttctgaacgaaaagctacgatatacttggaggtcgttcttaggctttttctcagctacggatacattggaaacggaaaggggtgccattagctggttctatggccgatcacggtcacgctcctactacctgaacaacctagtagtagttgccatatggctgctccatttgttcgtgtttgccgccatcatctgccctctagcagtgctctacatgtttgggctgatcatcaccactgccatatccgcgtgtcgtctgatacagcatgactacgggggtgaggtcaacaatggcggtgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctccagggtgtgctcttctgttaccggttcacattgtgctatgagcagaaaaggctggtggatttggtggttaacaaatatcactttgttgctagtttgagcgagtcagtgatggcgtacatgcaagagacgatgatcgggtgtgagaaggacccgccattcgtcaaaggaaggaacctggtcacctatgccgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgccaatgtacaagtacaatttctttctcgaggtcgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtatgagggcagacaatgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcctgctagccaaaatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcatggtacagaacagtgcgtgcttcgatggttgtgattctccggcttgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagtatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatctacacacgaatgcacgagcacacgctttctaacattgcgacgagggaatatttcattgagaaattgctgctcatcttcactcaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccgcgaaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtgcttgtgagaacacttcgtgccgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggatgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacgaattgaagcttatcactgagatattcatactaatcgttagacatggaggccgttacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggctgtagcagcagcctaaagactcttggttcccttgtgaaagaagctgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagataaattaa
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| Protein seq | MTSGMEPVDDSEWEEVSSINNYALFMGHMSMAVKGLGYLLVLWTTVILLGGFVSILGKKDFWCLTIITLVQTAGVSDIFLNEKLRYTWRSFLGFFSATDTLETERGAISWFYGRSRSRSYYLNNLVVVAIWLLHLFVFAAIICPLAVLYMFGLIITTAISACRLIQHDYGGEVNNGGANLKSALKFVYSIALLQGVLFCYRFTLCYEQKRLVDLVVNKYHFVASLSESVMAYMQETMIGCEKDPPFVKGRNLVTYAVGLTKSGSPDDFLSGVRILDSLLNTPMYKYNFFLEVEVEVEEQKAMVKQLLLSASYSQDGGLHTLLQSLDCMRADNAEARERAARIVAHLAGDLHLEQFPQGIHCIASLLEGPPKDYDGNIPVNYRELMLQGLSILMKLAAHEDCQRSINKTEGLLAKIMAPLRSGLLNHNDDPNSAWYRTVRASMVVILRLVDAPGQTGKELRRKISGDVEAMASMERILGCQGCGLGSFHDSSLFMQALDIYTRMHEHTLSNIATREYFIEKLLLIFTHQVHKEANIIFGLAVVGEKLATLCSHGKANAKIILQVKDDVVGDLTKILVQDRYPKEYRISAAKILEQLCVHHTDDDEYIQSLKEALKVKSPEVLVRTLRAESADRQMLAAVLSLIVTMTRNLMDAEDLPPLIDAINREANGFSILAELQSMVTKLSMKSKVTIVNRLNELKLITEIFILIVRHGGRYTVEEAENLMKSLWKAARNMSEIEDIMVISGCSSSLKTLGSLVKEAEELLPRERASEMEVIIEHPSCVNRNQIN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0016290 | OsLiXu_12g0016290.01 | Chr12 | 21316228 | 21321243 | + | NAM | ||
| CDS seq | atgactagtggaatggagcccgttgatgactcagagtgggaggaagttagctccatcaacaactacgcgctgttcatgggacacatgtctatggccgtcaaggggctgggttatcttcttgttttatggaccactgttatccttcttggtggctttgtctccatactggggaagaaggatttttggtgtctcacaataattacccttgtccagaccgctggagtctccgacatctttctgaacgaaaagctacgatatacttggaggtcgttcttaggctttttctcagctacggatacattggaaacggaaaggggtgccattagctggttctatggccgatcacggtcacgctcctactacctgaacaacctagtagtagttgccatatggctgctccatttgttcgtgtttgccgccatcatctgccctctagcagtgctctacatgtttgggctgatcatcaccactgccatatccgcgtgtcgtctgatacagcatgactacgggggtgaggtcaacaatggcggtgccaacctgaaatctgcgctgaagttcgtctactccatcgccttgctccagggtgtgctcttctgttaccggttcacattgtgctatgagcagaaaaggctggtggatttggtggttaacaaatatcactttgttgctagtttgagcgagtcagtgatggcgtacatgcaagagacgatgatcgggtgtgagaaggacccgccattcgtcaaaggaaggaacctggtcacctatgccgtaggtttaaccaagtctggatcccctgatgacttcctctctggggtgaggatcctggactccctcctgaatacgccaatgtacaagtacaatttctttctcgaggtcgaggtcgaggtcgaagagcagaaagcaatggtaaagcagctcctcctatcggcatcctacagccaagatggcggcctgcacacactgctgcagtcacttgattgtatgagggcagacaatgccgaggcgagggagcgcgctgcaaggatcgtggcgcaccttgctggtgacctccacctggagcagttcccgcaagggatccattgcatagcttctctgctcgaaggtccccctaaggattatgatggcaacatccctgtaaattatcgagaactgatgctgcagggcctgagtatcctcatgaagctcgccgcgcacgaggactgtcagcgatccatcaacaagacggagggcctgctagccaaaatcatggcgcctctgcggtctggtctgctcaaccacaacgatgaccctaatagtgcatggtacagaacagtgcgtgcttcgatggttgtgattctccggcttgtggatgctcctggccagactggcaaggaactccgccgcaaaatctcaggagacgtggaagccatggctagtatggagaggattctaggttgccaaggatgtgggctcggatcgttccatgatagctccctgtttatgcaagcattggacatctacacacgaatgcacgagcacacgctttctaacattgcgacgagggaatatttcattgagaaattgctgctcatcttcactcaccaagttcataaggaggccaacatcatttttgggttggcagtggtaggcgaaaagcttgcgacgctatgttcccatggcaaagcaaatgccaagataatcttgcaagtgaaagatgatgtcgttggtgatctcacaaaaatactagtacaagacagataccccaaggaatacagaataagcgccgcgaaaatcctcgagcagctgtgtgttcatcacactgatgatgatgaatatatccagagcctcaaggaagccttgaaggttaagagtccagaggtgcttgtgagaacacttcgtgccgaatctgcggacagacaaatgctggcggcagttttatctctgattgtgacgatgacacgaaacttaatggatgctgaagatttgcctccacttatcgatgcaattaacagggaagccaacggcttcagcatcttagcggagctccaatcgatggtcacaaagctgtcaatgaagagtaaggtgactatagtgaacagactgaacgaattgaagcttatcactgagatattcatactaatcgttagacatggaggccgttacaccgtagaagaagcagagaacttgatgaaatcactgtggaaggctgcgaggaacatgtcggaaattgaggacatcatggttatctctggctgtagcagcagcctaaagactcttggttcccttgtgaaagaagctgaggaactcctgcctagagagagggcatccgaaatggaagtgataattgagcatcctagctgtgtcaatcgaaatcagataaattaa
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| Protein seq | MTSGMEPVDDSEWEEVSSINNYALFMGHMSMAVKGLGYLLVLWTTVILLGGFVSILGKKDFWCLTIITLVQTAGVSDIFLNEKLRYTWRSFLGFFSATDTLETERGAISWFYGRSRSRSYYLNNLVVVAIWLLHLFVFAAIICPLAVLYMFGLIITTAISACRLIQHDYGGEVNNGGANLKSALKFVYSIALLQGVLFCYRFTLCYEQKRLVDLVVNKYHFVASLSESVMAYMQETMIGCEKDPPFVKGRNLVTYAVGLTKSGSPDDFLSGVRILDSLLNTPMYKYNFFLEVEVEVEEQKAMVKQLLLSASYSQDGGLHTLLQSLDCMRADNAEARERAARIVAHLAGDLHLEQFPQGIHCIASLLEGPPKDYDGNIPVNYRELMLQGLSILMKLAAHEDCQRSINKTEGLLAKIMAPLRSGLLNHNDDPNSAWYRTVRASMVVILRLVDAPGQTGKELRRKISGDVEAMASMERILGCQGCGLGSFHDSSLFMQALDIYTRMHEHTLSNIATREYFIEKLLLIFTHQVHKEANIIFGLAVVGEKLATLCSHGKANAKIILQVKDDVVGDLTKILVQDRYPKEYRISAAKILEQLCVHHTDDDEYIQSLKEALKVKSPEVLVRTLRAESADRQMLAAVLSLIVTMTRNLMDAEDLPPLIDAINREANGFSILAELQSMVTKLSMKSKVTIVNRLNELKLITEIFILIVRHGGRYTVEEAENLMKSLWKAARNMSEIEDIMVISGCSSSLKTLGSLVKEAEELLPRERASEMEVIIEHPSCVNRNQIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.289741 | 0.0 | 0.155232 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0548800 | RBH | 0.488204 | 0.761753 | 1.441346 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36270 | RBH | 0.321496 | 0.498914 | 0.361306 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0548800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015920 | RBH | 2.115333 | 2.328450 | 6.751227 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0291600 | RBH | 1.9758985 | 6.5784985 | 3.04132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015910 | RBH | 0.065199 | 0.054042 | 0.172286 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0323600 | RBH | 2.601076 | 14.062813 | 6.824515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008190 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016300 | RBH | 2.380965 | 4.285388 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016470 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016540 | RBH | 0.119288 | 1.402565 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015280 | RBH | 0.334655 | 0.331271 | 0.330627 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016030 | RBH | 0.632428 | 0.0 | 0.540273 |
