Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0012300 | OGI:12045290 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:16207741-16211213 | ||||||||
| Gene Symbol | OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S | ||||||||||
| DNA seq | cagacggatgccgcttcgaggcgttaggtgtgttttggaacgcgctccttatgctaattcacaagcttgggttgaatccccgcaaatttcagacaagaaacagatgaaacaacacaatggccaaaaatgctagccaagcAaaaacatcttcaaaacacttaatttatgattcggacggatactgatcaacttgtaaatacaggtcttctatacacaaatgcttgctgaggttacaaacagaaatacagacttgacgatttgcgaatagacatttcaagcttagacaatacaagttaggtgtcagatgaaaatcgacacacgattttcgtcatcttcttcgctcagactgctccctcaagaatggatgcctaagcgcctcttgtgctgttagacggctagctggatcataccttaacagaccttgcaaaaggtcaatgaactcgcccccagaatgatccacattttgcatcaccagattctgcatgcagaataaagcaatcagattcatgtatcaaacataatagacgatgaatgtattaacttgatatggaaatcatacctgaagacgtggcagcttcataacagctttcatgctatcccgtgacgcacaaccttcaggccagtttaaacggccttttctgacatatttctcagaatgacggctacatacaagcaacaaatgagcacacaatacctactaatccccaatgctgtgaatgcttacgacaatgagacggatcaaggacagcaacatactctgcccttttgagcatgtgatatggcaaaggaccaaacaccctctccatcatagcaagatgctccaagttttcatgggtctgaaacaatgcttctccctgcggtagctttggtaactcaaaaatcctgctgttgttgtgacagaatacaaaccaaatattgcacccaacaacataccgtgcatagctcaaccagtatacaaccaacactccagatatcacaggggtaactccatccaagtcctgaacagaacagccattccaatcgtaaacataaaccataatcacgctgacagggaaggctttgcactaggcaagacaaatacccaagataacttctggagctcgataatgcctagtagacacCacataggtctgatcctgctggtcatatgttgtgctgccaaaatcaatcaccttaatagcactggacttgggcagccgcttgaaataggaaccttcctttggggaacgggatgaaacctagcagagattatagaaggattaggaagataacataaaattgttgaatcataatcagctaaaccgggcaaaaagaagacgttaaaaaggctaaaaggtcaaataggtagaagaacaaagtatactttgtaatcaggcactttaatgtactccggagaaacaagaagaatgttctcaggctttaaatcagtgtgaatgaggcgcaattcatgcataactgcaacacacattacagagaagataaatatataaacaaacaaagcccgttaggtattaggtattcctaaaaggatgaagcaaagaataagcatcagctatcaactgatgacagcctgcaatttatggaagaataatctatatctgctaattagtgtggtaataagagtaacagaaggaactgtgcacacacatgctatacattccaacagttgtttggcaacctcccgaactagggcaattgggaatgagcggtaactgtttttccgcagaaaatcatataagcttggtccaagcttctcacagacctgcccaccatccattcaaattcaccaatgtttaagcttcatggggTtatctcgtttggttagttcataattgccataatctaatgatgtacttacaatacagatatggttacgatagtcaaaccagttccgaatttgaacacaactgcaaaatagaccagcttatatatacaagcaatcttgcgcacgtaaagcacacagatagatcaacagttacttaagggaagtggaaaagtgaaccataggactcacctggatctacttttttcatatttaccaagctgctcgagcatgccaatttctatcattgccgcatccctgtacttcttaatgcccctgatgatcttaatggccaccatttctttcctttccctatcccaacattccaatacctgaccaaaggtacctgatgtatatccaaaaagtttcagtttcaatatactccgctctgtcaacaaattcagcatgcaagaaacatctcaagttaagatgttcaattctaacagaggcagctctcccaactgaccttcacccatttttgcattaatcctgtctgcaaacattaaaaatctatatgtcaaaaaagttcacaagaatatagcaaatactatgcatgatacagatacagctacttgttttaattaaacatgtattcagtaattacatcgtggtgtgaggttgtctccaacagcaaagacaaaatgtccatccttgtcatcttctctcagaggaggggaagcaaaacgagggatttcctgggacgagagccccagcgtcacagcactgatgACaCATTTGCAACTTCTTGCCCACATAACCCAATCTGAACCTACAAATAGTGACCAAAATTTAATTAGATAAACTGCTACACTTCATATTCTGCAATAAAATTGTGAATAATTGATTCAATGAACTTCTACAAGTATGTGTTGAAAAATATTCCATACATAGATACATATCATTTCAGAAATCTCATCCcccaagctaaccaaggagactgaagttttagaaatcaacagataatacgtactatactatataattataaacaacaaataaatctcaaaacagaacattcaataaacaataagtactagatataaacaaaaagcaagattaactcgcgtgacgatttgtcctgaaactctcaagatctgtccagtaacaagcagattatatacaacaaatcgatccataaatctgtgttcataatcaatccaagagcccatcatgcatgcatccaaaaaccgattaacctcgcccacgccaaaattagcaggaaactcgttcaagcaacctcataatccagaaatctggtcaaaccaaccacccaagcgagagcaggtggctaatttccaccagatctattgtcgcctcacctaccgagacgacccaaatcgacataataaaccagaaacacaacacaacacgccgtaataataataacccgcaccagatcgacagatccgcgaggggagatggacgcggggcgaccggatcgggggggccatacctggtgcatctcggggccgacgtcccaccccagccgctgccgcttccgcgggcggcggtcggccagcggcgcgcgcggcatctcggccaagcactccatccccctctcgatctttctctctctctcggctcggcgaatcgaaccagcggcggcggcggcggcggcggcgatcggagaatttttccctggattggatgt
More
|
||||||||||
| CDS seq | atgcaccagGTTCAGATTGGGTTATGTGGGCAAGAAGTTGCAAATGttgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtGgtgtctactaggcattatcgagctccagaatgcaaagccttccctgtcagcgtgattatggtttatgtttacgattggaatggctgttctgttcaggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
More
|
||||||||||
| Protein seq | MHQVQIGLCGQEVANVAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPECKAFPVSVIMVYVYDWNGCSVQDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR |
||||||||||
| Function | Serine/threonine-protein kinase AFC2 [UniProtKB/Swiss-Prot:P51567] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0012300 | OsLiXu_12g0012300.01 | Chr12 | 16207741 | 16211057 | - | NAM | ||
| CDS seq | atgcaccagGTTCAGATTGGGTTATGTGGGCAAGAAGTTGCAAATGttgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtGgtgtctactaggcattatcgagctccagaatgcaaagccttccctgtcagcgtgattatggtttatgtttacgattggaatggctgttctgttcaggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
More
|
|||||||
| Protein seq | MHQVQIGLCGQEVANVAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPECKAFPVSVIMVYVYDWNGCSVQDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0012300 | OsLiXu_12g0012300.02 | Chr12 | 16207741 | 16211057 | - | NAM | ||
| CDS seq | atgcaccagGTTCAGATTGGGTTATGTGGGCAAGAAGTTGCAAATGttgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtGgtgtctactaggcattatcgagctccagaagacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
More
|
|||||||
| Protein seq | MHQVQIGLCGQEVANVAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0012300 | OsLiXu_12g0012300.03 | Chr12 | 16207846 | 16209594 | - | NAM | ||
| CDS seq | atgtgtgttgcagttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtGgtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
More
|
|||||||
| Protein seq | MCVAVMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0012300 | OsLiXu_12g0012300.04 | Chr12 | 16207846 | 16211213 | - | IsoSeq | ||
| CDS seq | catccaatccagggaaaaattctccgatcgccgccgccgccgccgccgccgctggttcgattcgccgagccgagagagagagaaagatcgagagggggatggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagcggcagcggctggggtgggacgtcggccccgagatgcaccagGTTCAGATTGGGTTATGTGGGCAAGAAGTTGCAAATGtGTcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagaga
More
|
|||||||
| Protein seq | HPIQGKILRSPPPPPPPLVRFAEPRERERSRGGWSAWPRCRARRWPTAARGSGSGWGGTSAPRCTRFRLGYVGKKLQMCHQCCDAGALVPGNPSFCFPSSER |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 16208738 | 16208832 | - | OsLiXu_12g0012300.01 | OsLiXu_12g0012300.01,OsLiXu_12g0012300.02 | All |
| RI | Chr12 | 16208497 | 16208738 | - | OsLiXu_12g0012300.02 | OsLiXu_12g0012300.03,OsLiXu_12g0012300.02 | All |
| RI | Chr12 | 16210167 | 16210331 | - | OsLiXu_12g0012300.04 | OsLiXu_12g0012300.01,OsLiXu_12g0012300.04,OsLiXu_12g0012300.02 | All |
| A5 | Chr12 | 16208738 | 16208832 | - | OsLiXu_12g0012300.03 | OsLiXu_12g0012300.02,OsLiXu_12g0012300.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.440611 | 0.0 | 5.473079 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0460800 | RBH | 8.242885 | 6.006760 | 13.072043 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g27520 | RBH | 4.628409 | 5.382082 | 4.491594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0460800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012590 | RBH | 2.536878 | 41.589043 | 29.450705 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012730 | RBH | 1.504954 | 28.589085 | 13.684764 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012560 | RBH | 6.450288 | 28.905201 | 37.594021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012340 | RBH | 0.730858 | 0.929520 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012050 | RBH | 23.251848 | 74.952133 | 76.637558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0229700 | RBH | 30.068268 | 76.353424 | 101.117859 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012250 | RBH | 1.197933 | 1.953627 | 6.457352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0253600 | RBH | 33.298071 | 60.348173 | 62.457802 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012130 | RBH | 0.655605 | 1.257597 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012490 | RBH | 1.810265 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012360 | RBH | 25.712740 | 87.787003 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012520 | RBH | 1.691418 | 31.365103 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012300 | RBH | 3.552869 | 17.453945 | 13.288451 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012090 | RBH | 7.262187 | 130.889633 | 41.763783 |
