Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0012730 | OGI:12045290 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:16475652-16479097 | ||||||||
| Gene Symbol | OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S | ||||||||||
| DNA seq | atgaaacaacacaatggccaaaaatgctagccaagcaaaaacatcttcaaaacacttaatttatgattcggacggatactgatcaacttgtaaatacaggtcttctatacacaaatgcttgctgaggttacaaacagaaatacagacttgacgatttgcgaatagacatttcaagcttagacaatacaagttaggtgtcagatgaaaatcgacacacgattttcgtcatcttcttcgctcagactgctccctcaagaatggatgcctaagcgcctcttgtgctgttagacggctagctggatcataccttaacagaccttgcaaaaggtcaatgaactcgcccccagaatgatccacattttgcatcaccagattctgcatgcagaataaagcaatcagattcatgtatcaaacataatagacgatgaatgtattaacttgatatggaaatcatacctgaagacgtggcagcttcataacagctttcatgctatcccgtgacgcacaaccttcaggccagtttaaacggccttttctgacatatttctcagaatgacggctacatacaagcaacaaatgagcacacaatacctactaatccccaatgctgtgaatgcttacgacaatgagacggatcaaggacagcaacatactctgcccttttgagcatgtgatatggcaaaggaccaaacaccctctccatcatagcaagatgctccaagttttcatgggtctgaaacaatgcttctccctgcggtagctttggtaactcaaaaatcctgctgttgttgtgacagaatacaaaccaaatattgcacccaacaacataccgtgcatagctcaaccagtatacaaccaacactccagatatcacaggggtaactccatccaagtcctgaacagaacagccattccaatcgtaaacataaaccataatcacgctgacagggaaggctttgcactaggcaagacaaatacccaagataacttctggagctcgataatgcctagtagacaccacataggtctgatcctgctggtcatatgttgtgctgccaaaatcaatcaccttaatagcactggacttgggcagccgcttgaaataggaaccttcctttggggaacgggatgaaacctagcagagattatagaaggattaggaagataacataaaattgttgaatcataatcagctaaaccgggcaaaaagaagacgttaaaaaggctaaaaggtcaaataggtagaagaacaaagtatactttgtaatcaggcactttaatgtactccggagaaacaagaagaatgttctcaggctttaaatcagtgtgaatgaggcgcaattcatgcataactgcaacacacattacagagaagataaatatataaacaaacaaagcccgttaggtattaggtattcctaaaaggatgaagcaaagaataagcatcagctatcaactgatgacagcctgcaatttatggaagaataatctatatctgctaattagtgtggtaataagagtaacagaaggaactgtgcacacacatgctatacattccaacagttgtttggcaacctcccgaactagggcaattgggaatgagcggtaactgtttttccgcagaaaatcatataagcttggtccaagcttctcacagacctgcccaccatccattcaaattcaccaatgtttaagcttcatggggttatctcgtttggttagttcataattgccataatctaatgatgtacttacaatacagatatggttacgatagtcaaaccagttccgaatttgaacacaactgcaaaatagaccagcttatatatacaagcaatcttgcgcaagtaaagcacacagatagatcaacagttacttaagggaagtggaaaagtgaaccataggactcacctggatctacttttttcatatttaccaagctgctcgagcatgccaatttctatcattgccgcatccctgtacttcttaatgcccctgatgatcttaatggccaccatttctttcctttccctatcccaacattccaatacctgaccaaaggtacctgatgtatatccaaaaagtttcagtttcaatatactccgctctgtcaacaaattcagcatgcaagaaacatctcaagttaagatgttcaattctaacagaggcagctctcccaactgaccttcacccatttttgcattaatcctgtctgcaaacattaaaaatctatatgtcaaaaaagttcacaagaatatagcaaatactatgcatgatacagatacagctacttgttttaattaaacatgtattcagtaattacatcgtggtgtgaggttgtctccaacagcaaagacaaaatgtccatccttgtcatcttctctcagaggaggggaagcaaaacgagggatttcctgggacgagagccccagcgtcacagcactgatgacatttgcaacttcttgcccacataacccaatctgaacctacaaatagtgaccaaaatttaattagataaactgctacacttcatattctgcaataaaattgtgaataattgattcaatgaacttctacaagtatgtgttgaaaaatattccatatatagatacatatcatttcagaaatctcatccccaagctaaccaaggagactgaagttttagaaatcaacagataatacgtactatactatataattataaacaacaaataaatctcaaaacagaacattcaataaacaataagtactagatataaacaaaaagcaagattaactcgcgtgacgatttgtcctgaaactctcaagatctgtccagtaacaagcagattatatacaacaaatcgatccataaatatgtgttcataatcaatccaagagcccatcatgcatgcatccaaaaaccgattaacctcgcccacgccaaaataacaggaaactcgttcaagcaacctcataatccagaaatctggtcaaaccaaccacccaagcgagagcaggtggctaatttccaccagatctattgtcgcctcacctaccgagacgacccaaatcgacataataaaccagaaacacaacacaacacgccgtaataataataacccgcaccagatcgacagatccgcgaggggagatggacgcggggcgaccggatcgggggggccatacctggtgcatctcggggccgacgtcccaccccagccgctgcagcttccgcgggcggcggtcggccagcggcgcgcgcggcatctcggccaagcactccatccccctctcgatctttctctctctctcggctcggcgaatcgaaccagcggcggcggcggcggcggcggcggcggcgctcggagaatttttccctggattggatgtgatttgggggcgaaaccctagctgcgtgttgctttattgcgggggagggggatgagattaggtttggggggaat
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| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR |
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| Function | Serine/threonine-protein kinase AFC2 [UniProtKB/Swiss-Prot:P51567] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.08 | Chr12 | 16475680 | 16479045 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.02 | Chr12 | 16475680 | 16479048 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.06 | Chr12 | 16475681 | 16479048 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttgttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacggtatgttgttgggtgcaatatttggtttgtattctgtcacaacaacagcaggatttttgagttaccaaagctaccgcagggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLVMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEDLDGVTPVISGVLVVYWLSYARYVVGCNIWFVFCHNNSRIFELPKLPQGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.05 | Chr12 | 16475681 | 16479048 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttgttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLVMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.03 | Chr12 | 16475680 | 16479048 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLEFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.07 | Chr12 | 16475680 | 16479045 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.04 | Chr12 | 16475680 | 16479048 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.01 | Chr12 | 16475668 | 16479058 | - | NAM | ||
| CDS seq | atggagtgcttggccgagatgccgcgcgcgccgctggccgaccgccgcccgcggaagctgcagcggctggggtgggacgtcggccccgagatgcaccaggttcagattgggttatgtgggcaagaagttgcaaatgtcatcagtgctgtgacgctggggctctcgtcccaggaaatccctcgttttgcttcccctcctctgagagaagatgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcggcaatgatagaaattggcatgctcgagcagcttggtaaatatgaaaaaagtagatccagttgtgttcaaattcggaactggtttgactatcgtaaccatatctgtattgtctgtgagaagcttggaccaagcttatatgattttctgcggaaaaacagttaccgctcattcccaattgccctagttcgggaggttgccaaacaactgttggaatgtatagcatttatgcatgaattgcgcctcattcacactgatttaaagcctgagaacattcttcttgtttctccggagtacattaaagtgcctgattacaaagtttcatcccgttccccaaaggaaggttcctatttcaagcggctgcccaagtccagtgctattaaggtgattgattttggcagcacaacatatgaccagcaggatcagacctatgtggtgtctactaggcattatcgagctccagaagttatcttgggacttggatggagttacccctgtgatatctggagtgttggttgtatactggttgagctatgcacgggagaagcattgtttcagacccatgaaaacttggagcatcttgctatgatggagagggtgtttggtcctttgccatatcacatgctcaaaagggcagaccgtcattctgagaaatatgtcagaaaaggccgtttaaactggcctgaaggttgtgcgtcacgggatagcatgaaagctgttatgaagctgccacgtcttcagaatctggtgatgcaaaatgtggatcattctgggggcgagttcattgaccttttgcaaggtctgttaaggtatgatccagctagccgtctaacagcacaagaggcgcttaggcatccattcttgagggagcagtctgagcgaagaagatga
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| Protein seq | MECLAEMPRAPLADRRPRKLQRLGWDVGPEMHQVQIGLCGQEVANVISAVTLGLSSQEIPRFASPPLREDDKDGHFVFAVGDNLTPRYRINAKMGEGTFGQVLECWDRERKEMVAIKIIRGIKKYRDAAMIEIGMLEQLGKYEKSRSSCVQIRNWFDYRNHICIVCEKLGPSLYDFLRKNSYRSFPIALVREVAKQLLECIAFMHELRLIHTDLKPENILLVSPEYIKVPDYKVSSRSPKEGSYFKRLPKSSAIKVIDFGSTTYDQQDQTYVVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVFGPLPYHMLKRADRHSEKYVRKGRLNWPEGCASRDSMKAVMKLPRLQNLVMQNVDHSGGEFIDLLQGLLRYDPASRLTAQEALRHPFLREQSERRR
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012730 | OsKeNa_12g0012730.09 | Chr12 | 16475652 | 16479097 | - | IsoSeq | ||
| CDS seq | atgacaaggatggacattttgtctttgctgttggagacaacctcacaccacgatacaggattaatgcaaaaatgggtgaaggtacctttggtcaggtattggaatgttgggatagggaaaggaaagaaatggtggccattaagatcatcaggggcattaagaagtacagggatgcgg |
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| Protein seq | MTRMDILSLLLETTSHHDTGLMQKWVKVPLVRYWNVGIGKGKKWWPLRSSGALRSTGMR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 16476305 | 16476546 | - | OsKeNa_12g0012730.08,OsKeNa_12g0012730.02,OsKeNa_12g0012730.06 | OsKeNa_12g0012730.09,OsKeNa_12g0012730.03,OsKeNa_12g0012730.05,OsKeNa_12g0012730.07,OsKeNa_12g0012730.02,OsKeNa_12g0012730.04,OsKeNa_12g0012730.06,OsKeNa_12g0012730.01,OsKeNa_12g0012730.08 | All |
| A5 | Chr12 | 16476546 | 16476640 | - | OsKeNa_12g0012730.09,OsKeNa_12g0012730.01,OsKeNa_12g0012730.07,OsKeNa_12g0012730.03,OsKeNa_12g0012730.04,OsKeNa_12g0012730.05 | OsKeNa_12g0012730.09,OsKeNa_12g0012730.03,OsKeNa_12g0012730.05,OsKeNa_12g0012730.07,OsKeNa_12g0012730.02,OsKeNa_12g0012730.04,OsKeNa_12g0012730.06,OsKeNa_12g0012730.01,OsKeNa_12g0012730.08 | All |
| A5 | Chr12 | 16477003 | 16477205 | - | OsKeNa_12g0012730.01 | OsKeNa_12g0012730.03,OsKeNa_12g0012730.02,OsKeNa_12g0012730.01,OsKeNa_12g0012730.08 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.504954 | 28.589085 | 13.684764 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0460800 | RBH | 8.242885 | 6.006760 | 13.072043 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g27520 | RBH | 4.628409 | 5.382082 | 4.491594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0460800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012590 | RBH | 2.536878 | 41.589043 | 29.450705 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012560 | RBH | 6.450288 | 28.905201 | 37.594021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012340 | RBH | 0.730858 | 0.929520 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012050 | RBH | 23.251848 | 74.952133 | 76.637558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0229700 | RBH | 30.068268 | 76.353424 | 101.117859 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012250 | RBH | 1.197933 | 1.953627 | 6.457352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0253600 | RBH | 33.298071 | 60.348173 | 62.457802 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012130 | RBH | 0.655605 | 1.257597 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012490 | RBH | 1.810265 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012360 | RBH | 25.712740 | 87.787003 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012300 | RBH | 4.440611 | 0.0 | 5.473079 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012520 | RBH | 1.691418 | 31.365103 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012300 | RBH | 3.552869 | 17.453945 | 13.288451 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012090 | RBH | 7.262187 | 130.889633 | 41.763783 |
