Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0004930 | OGI:12009680 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:3729210-3730926 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagatggggggtcctctgctgcccttcactttcaagtcaacctcaacaactacagggttcactattacaatagctcgactaggacgtgtaagtctcaaacatgaatcctgcacgcatgggcgacagaaagaggggcaatcagatcaacatgtttcataatctttgataggctgtgtcacttgcaaagatactgcacatgacttcaatccaacggtttgtaagaaacatgtcaccatgcagcaagatgggtagtaaaaactgtagttgttaatgtggactgaagtaatgattgcatctctttccaaaaaagaataactcatggctgtaactcattgctgctaagtgctaggttaaggatgagatcatccccaaaatttcatcacaggaacagtaagaaagctttggaaaacatgggttccctctatttagcttttggtagcagtaaattggttaactaccaatgataatgcacccacttgattcatgactgacgacaaataaaactaaaacaaaatgaaatggaccagaaataatgaagggctacacaatgcacatacctgtggtgaggcaagggtctggcagtgctctctatcacaacgaaacaagaagttcctcttgttatcttgtgagtcacgcgtagcaacgataccatagacgtggagtggccattggagacctcccatgatctcgatcaccttcactaagaagaattgcatcatgctaattggcagataatatggtggcactggcctatccgtgttcctcattggagaagcatccgctggacacacaaattcatcgagtgattattggactggagcagaaattgacaaccaaatgacaaatgtgagtaagaaaatatacatatgagttaacttcttttttttttttacaatctgcttccttccaatggctcctggttcccaaaattcactctgttcttataactgtccatggccacccttcaagccttcaaacccaagacccaggaaagaaatgcaaattgcaaaatatgactgccccaactaggtttgtgtggttgggcatcccaatacattgaaaagtgttcatctataagattaatatatgtgcgtgcagtgcatctacaacatacaagattgctaagtccgttcattattgctgtcaaatgattgtgtcaaaaatcacaaatgagagggcggtgcacaatgaagatagaagaaattagattgattttgaatcaggctagcgaatccaaagagccaaagagagaatatatacatacatacatacatacatacatatatatatatacacacatatatatatatatatatatacatacacATatatatatatatacatacacatatatatatatacatacacatatatatatacatacatatatatatatatatatatatacatatatatatatatatatatacatatatatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatcagagaaatccacttactctcgtcctcgaaggcaccgaatttgccgtacatcgtttcccaattctgccgcgagcatatgagcccattaggtagcggtgtgcagtcctcctcctcatcgtagccgccggcgagcgcttcctccttggcagtctccaccaccgtactcgtgtggccgtggctagccccgtcaccagactggccggactccat
More
|
||||||||||
| CDS seq | atggagtccggccagtctggtgacggggctagccacggccacacgagtacggtggtggagactgccaaggaggaagcgctcgccggcggctacgatgaggaggaggactgcacaccgctacctaatgggctcatatgctcgcggcagaattgggaaacgatgtacggcaaattcggtgccttcgaggacgagacggatgcttctccaatgaggaacacggataggccagtgccaccatattatctgccaattagcatgatgcaattcttcttagtgaaggtgatcgagatcatgggaggtctccaatggccactccacgtctatggtatcgttgctacgcgtgactcacaagataacaagaggaacttcttgtttcgttgtgatagagagcactgccagacccttgcctcaccacaggattcatgtttgagacttacacgtcctagtcgagctattgtaatagtgaaccctgtagttgttgaggttgacttgaaagtgaagggcagcagaggaccccccatctga
More
|
||||||||||
| Protein seq | MESGQSGDGASHGHTSTVVETAKEEALAGGYDEEEDCTPLPNGLICSRQNWETMYGKFGAFEDETDASPMRNTDRPVPPYYLPISMMQFFLVKVIEIMGGLQWPLHVYGIVATRDSQDNKRNFLFRCDREHCQTLASPQDSCLRLTRPSRAIVIVNPVVVEVDLKVKGSRGPPI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0004930 | OsLiXu_12g0004930.01 | Chr12 | 3729210 | 3730926 | - | NAM | ||
| CDS seq | atggagtccggccagtctggtgacggggctagccacggccacacgagtacggtggtggagactgccaaggaggaagcgctcgccggcggctacgatgaggaggaggactgcacaccgctacctaatgggctcatatgctcgcggcagaattgggaaacgatgtacggcaaattcggtgccttcgaggacgagacggatgcttctccaatgaggaacacggataggccagtgccaccatattatctgccaattagcatgatgcaattcttcttagtgaaggtgatcgagatcatgggaggtctccaatggccactccacgtctatggtatcgttgctacgcgtgactcacaagataacaagaggaacttcttgtttcgttgtgatagagagcactgccagacccttgcctcaccacaggattcatgtttgagacttacacgtcctagtcgagctattgtaatagtgaaccctgtagttgttgaggttgacttgaaagtgaagggcagcagaggaccccccatctga
More
|
|||||||
| Protein seq | MESGQSGDGASHGHTSTVVETAKEEALAGGYDEEEDCTPLPNGLICSRQNWETMYGKFGAFEDETDASPMRNTDRPVPPYYLPISMMQFFLVKVIEIMGGLQWPLHVYGIVATRDSQDNKRNFLFRCDREHCQTLASPQDSCLRLTRPSRAIVIVNPVVVEVDLKVKGSRGPPI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.155443 | 0.0 | 0.607698 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0103150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07370 | SBH | 1.810995 | 1.393381 | 0.168311 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0103150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004750 | RBH | 1.366495 | 2.654833 | 2.403121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005000 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004990 | SBH | 4.047705 | 4.714352 | 3.382984 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004830 | SBH | 0.928828 | 0.198810 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004980 | RBH | 4.086265 | 0.0 | 3.013820 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0061700 | SBH | 0 | 0.1090915 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0066100 | RBH | 6.7593815 | 16.5283355 | 3.496415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004750 | RBH | 0.493046 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005160 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004990 | RBH | 20.868607 | 63.705498 | 12.427229 |
