Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0005000 | OGI:12009680 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:3784787-3786394 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatggaagtaacgaccaggcgatgatgatcgacagcttacaaaacccaagcatgaagtaactttggctccttgatgtctttctagcacagaagatttcttccttaacaacagccgtgtcatcgccaccgtgatctgtagcctccatccggagaatcagcttccctgtcccttcaacagaaacaacacgtcgccggagcacgacgaacccatcatcatcgaccaccaccttagaccctgtttagttcccaaacaaagaattttcacccagttacatcgaatatttggacatatacatggagtattaaatatggaaaaaaaaataattacacagattgcgtgtaaattgcgagacgaatcttttaagcctaattgcgccatgatttgacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtttcgcagtttccaggcgaaatctgtaatttgtttttgttattagtctacgttaaataattcaaatgtgtgtccgtatatccgatgtgacacgcaaaaaatttcagttcgcgaactaaagaggcccttaccatcctgaaagtcaagaagcaacacatcctcatcaatcccagcagttcgagcagtaaaacgagccctgaaatcaggcgatccttcaacgactccaaccgtgatggtggcctccactgcactctgcagatgtgcaaacacaaactccatcgtgctgtcctctgttgattccagctgtctatgaggaaagccaggtttaatcctatgaccagtgtggttgtgaacaaaagcatgctcgcttaaaaccttgtcttcagatgggggtcctctgctgcccttcactttcaagtcaacctcaacaactacagggttcactattacaatagctcgactaggacgtgtaagtctcaaacatgaatcctgcacgcatgggcgacagaaagaggggcaatcagatcaacatgtttcataatctttgataggctgtgtcacttgcaaagatactgcacatgacttcaatccaacggtttgtaagaaacatgtcaccatgcagcaagatgggtagtaaaaactgtagttgttaatgtggactgaagtaatgattgcatctctttccaaaaaagaataactcatggctgtaactcattgctgctaagtgctaggttaaggatgagatcatccccaaaatttcatcacaggaacagtaagaaagctttggaaaacatgggttccctctatttagcttttggtagcagtaaattggttaactaccaatgataatgcacccacttgattcatgactgacgacaaataaaactaaaacaaaatgaaatggaccagaaataatgaagggctacacaatgcacatacctgtggtgaggcaagggtctggcagtgctctctatcacaacgaaacaagaagttcctcttgttatcttgtgagtcacgcgtagcaacgataccatagacgtggagtggccattggagacctcccatgatctcgatcaccttcactgagaagaattgcatcatgctaattggcagataatatggtggcactggcctatccgtgttcctcattggagaagcatccg
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| CDS seq | atgaggaacacggataggccagtgccaccatattatctgccaattagcatgatgcaattcttctcagtgaaggtgatcgagatcatgggaggtctccaatggccactccacgtctatggtatcgttgctacgcgtgactcacaagataacaagaggaacttcttgtttcgttgtgatagagagcactgccagacccttgcctcaccacaggattcatgtttgagacttacacgtcctagtcgagctattgtaatagtgaaccctgtagttgttgaggttgacttgaaagtgaagggcagcagaggacccccatctgaagacaaggttttaagcgagcatgcttttgttcacaaccacactggtcataggattaaacctggctttcctcatagacagctggaatcaacagaggacagcacgatggagtttgtgtttgcacatctgcagagtgcagtggaggccaccatcacggttggagtcgttgaaggatcgcctgatttcagggctcatcacggtggcgatgacacggctgttgttaaggaagaaatcttctgtgctagaaagacatcaaggagccaaagttacttcatgcttgggttttgtaagctgtcgatcatcatcgcctggtcgttacttccatag
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| Protein seq | MRNTDRPVPPYYLPISMMQFFSVKVIEIMGGLQWPLHVYGIVATRDSQDNKRNFLFRCDREHCQTLASPQDSCLRLTRPSRAIVIVNPVVVEVDLKVKGSRGPPSEDKVLSEHAFVHNHTGHRIKPGFPHRQLESTEDSTMEFVFAHLQSAVEATITVGVVEGSPDFRAHHGGDDTAVVKEEIFCARKTSRSQSYFMLGFCKLSIIIAWSLLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0005000 | OsKeNa_12g0005000.01 | Chr12 | 3784787 | 3786394 | - | NAM | ||
| CDS seq | atgaggaacacggataggccagtgccaccatattatctgccaattagcatgatgcaattcttctcagtgaaggtgatcgagatcatgggaggtctccaatggccactccacgtctatggtatcgttgctacgcgtgactcacaagataacaagaggaacttcttgtttcgttgtgatagagagcactgccagacccttgcctcaccacaggattcatgtttgagacttacacgtcctagtcgagctattgtaatagtgaaccctgtagttgttgaggttgacttgaaagtgaagggcagcagaggacccccatctgaagacaaggttttaagcgagcatgcttttgttcacaaccacactggtcataggattaaacctggctttcctcatagacagctggaatcaacagaggacagcacgatggagtttgtgtttgcacatctgcagagtgcagtggaggccaccatcacggttggagtcgttgaaggatcgcctgatttcagggctcatcacggtggcgatgacacggctgttgttaaggaagaaatcttctgtgctagaaagacatcaaggagccaaagttacttcatgcttgggttttgtaagctgtcgatcatcatcgcctggtcgttacttccatag
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| Protein seq | MRNTDRPVPPYYLPISMMQFFSVKVIEIMGGLQWPLHVYGIVATRDSQDNKRNFLFRCDREHCQTLASPQDSCLRLTRPSRAIVIVNPVVVEVDLKVKGSRGPPSEDKVLSEHAFVHNHTGHRIKPGFPHRQLESTEDSTMEFVFAHLQSAVEATITVGVVEGSPDFRAHHGGDDTAVVKEEIFCARKTSRSQSYFMLGFCKLSIIIAWSLLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0173400 | SBH | 2.203531 | 3.945253 | 4.559412 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07370 | RBH | 1.810995 | 1.393381 | 0.168311 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0173400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004750 | RBH | 1.366495 | 2.654833 | 2.403121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004990 | RBH | 4.047705 | 4.714352 | 3.382984 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004830 | RBH | 0.928828 | 0.198810 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004970 | RBH | 3.551657 | 0.0 | 10.111043 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0063200 | SBH | 0.2106755 | 0.2781945 | 0.102496 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0066100 | RBH | 6.7593815 | 16.5283355 | 3.496415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004740 | RBH | 0.133662 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005160 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004920 | RBH | 3.741530 | 0.0 | 0.486047 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004990 | RBH | 20.868607 | 63.705498 | 12.427229 |
